@optave/codegraph 3.7.0 → 3.8.1

package/dist/domain/analysis/module-map.js.map

@@ -1 +1 @@
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package/dist/domain/analysis/query-helpers.d.ts

@@ -1,3 +1,4 @@
+import { type Repository } from '../../db/index.js';
 import type { BetterSqlite3Database, CodegraphConfig } from '../../types.js';
 /**
  * Open a readonly DB connection, run `fn`, and close the DB on completion.
@@ -5,6 +6,12 @@ import type { BetterSqlite3Database, CodegraphConfig } from '../../types.js';
  * that appears in every analysis query function.
  */
 export declare function withReadonlyDb<T>(customDbPath: string | undefined, fn: (db: BetterSqlite3Database) => T): T;
+/**
+ * Open a Repository (native-first, falling back to better-sqlite3), run `fn`,
+ * and close on completion. Mirrors `withReadonlyDb` but routes queries through
+ * the native Rust engine when available.
+ */
+export declare function withRepo<T>(customDbPath: string | undefined, fn: (repo: InstanceType<typeof Repository>) => T): T;
 /**
  * Resolve common analysis options into a normalized form.
  * Shared across fn-impact, context, dependencies, and exports modules.

package/dist/domain/analysis/query-helpers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"query-helpers.d.ts","sourceRoot":"","sources":["../../../src/domain/analysis/query-helpers.ts"],"names":[],"mappings":"AAAA,OAAO,EAAgC,KAAK,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAElF,OAAO,KAAK,EAAE,qBAAqB,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAE7E;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,CAAC,EAC9B,YAAY,EAAE,MAAM,GAAG,SAAS,EAChC,EAAE,EAAE,CAAC,EAAE,EAAE,qBAAqB,KAAK,CAAC,GACnC,CAAC,CAOH;AAED;;;;GAIG;AACH,wBAAgB,QAAQ,CAAC,CAAC,EACxB,YAAY,EAAE,MAAM,GAAG,SAAS,EAChC,EAAE,EAAE,CAAC,IAAI,EAAE,YAAY,CAAC,OAAO,UAAU,CAAC,KAAK,CAAC,GAC/C,CAAC,CAOH;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,eAAe,CAAA;CAAE,GAAG;IAC1F,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,eAAe,CAAC;IACxB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACtC,CAKA"}

package/dist/domain/analysis/query-helpers.js

@@ -1,4 +1,4 @@
-import { openReadonlyOrFail } from '../../db/index.js';
+import { openReadonlyOrFail, openRepo } from '../../db/index.js';
 import { loadConfig } from '../../infrastructure/config.js';
 /**
  * Open a readonly DB connection, run `fn`, and close the DB on completion.
@@ -14,6 +14,20 @@ export function withReadonlyDb(customDbPath, fn) {
         db.close();
     }
 }
+/**
+ * Open a Repository (native-first, falling back to better-sqlite3), run `fn`,
+ * and close on completion. Mirrors `withReadonlyDb` but routes queries through
+ * the native Rust engine when available.
+ */
+export function withRepo(customDbPath, fn) {
+    const { repo, close } = openRepo(customDbPath);
+    try {
+        return fn(repo);
+    }
+    finally {
+        close();
+    }
+}
 /**
  * Resolve common analysis options into a normalized form.
  * Shared across fn-impact, context, dependencies, and exports modules.

package/dist/domain/analysis/query-helpers.js.map

@@ -1 +1 @@
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+{"version":3,"file":"query-helpers.js","sourceRoot":"","sources":["../../../src/domain/analysis/query-helpers.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,QAAQ,EAAmB,MAAM,mBAAmB,CAAC;AAClF,OAAO,EAAE,UAAU,EAAE,MAAM,gCAAgC,CAAC;AAG5D;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAC5B,YAAgC,EAChC,EAAoC;IAEpC,MAAM,EAAE,GAAG,kBAAkB,CAAC,YAAY,CAAC,CAAC;IAC5C,IAAI,CAAC;QACH,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC;IAChB,CAAC;YAAS,CAAC;QACT,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;AACH,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,QAAQ,CACtB,YAAgC,EAChC,EAAgD;IAEhD,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAC;IAC/C,IAAI,CAAC;QACH,OAAO,EAAE,CAAC,IAAI,CAAC,CAAC;IAClB,CAAC;YAAS,CAAC;QACT,KAAK,EAAE,CAAC;IACV,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,mBAAmB,CAAC,IAAqD;IAKvF,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;IACtC,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,IAAI,UAAU,EAAE,CAAC;IAC3C,MAAM,WAAW,GAAG,MAAM,CAAC,OAAO,IAAI,EAAE,CAAC;IACzC,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC;AAC1C,CAAC"}

package/dist/domain/graph/builder/pipeline.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/pipeline.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAqOrE;;;;GAIG;AACH,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,WAAW,GAAG,SAAS,CAAC,CAmBlC"}
+{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/pipeline.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAA+B,MAAM,mBAAmB,CAAC;AAsSlG;;;;GAIG;AACH,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,WAAW,GAAG,SAAS,CAAC,CA8QlC"}

package/dist/domain/graph/builder/pipeline.js

@@ -6,10 +6,12 @@
  */
 import path from 'node:path';
 import { performance } from 'node:perf_hooks';
-import { closeDbPair, getBuildMeta, initSchema, MIGRATIONS, openDb } from '../../../db/index.js';
+import { closeDbPair, getBuildMeta, initSchema, MIGRATIONS, openDb, setBuildMeta, } from '../../../db/index.js';
 import { detectWorkspaces, loadConfig } from '../../../infrastructure/config.js';
-import { info, warn } from '../../../infrastructure/logger.js';
+import { debug, info, warn } from '../../../infrastructure/logger.js';
 import { loadNative } from '../../../infrastructure/native.js';
+import { semverCompare } from '../../../infrastructure/update-check.js';
+import { toErrorMessage } from '../../../shared/errors.js';
 import { CODEGRAPH_VERSION } from '../../../shared/version.js';
 import { getActiveEngine } from '../../parser.js';
 import { setWorkspaces } from '../resolve.js';
@@ -32,18 +34,27 @@ function initializeEngine(ctx) {
         dataflow: ctx.opts.dataflow !== false,
         ast: ctx.opts.ast !== false,
         nativeDb: ctx.nativeDb,
-        // WAL checkpoint callbacks for dual-connection WAL guard (#696).
+        // WAL checkpoint callbacks for dual-connection WAL guard (#696, #715).
         // Feature modules (ast, cfg, complexity, dataflow) receive `db` as a
         // parameter and cannot tolerate close/reopen (stale reference). Instead,
-        // checkpoint the WAL so native writes start with a clean slate. Features
-        // return early on native success and never read native-written WAL data
-        // through the JS connection, so a post-write checkpoint is unnecessary.
+        // checkpoint the WAL so native writes start with a clean slate.
+        // After native writes, resumeJsDb checkpoints through rusqlite so
+        // better-sqlite3 never reads WAL frames from a different SQLite library.
         suspendJsDb: ctx.nativeDb
             ? () => {
                 ctx.db.pragma('wal_checkpoint(TRUNCATE)');
             }
             : undefined,
-        resumeJsDb: ctx.nativeDb ? () => { } : undefined,
+        resumeJsDb: ctx.nativeDb
+            ? () => {
+                try {
+                    ctx.nativeDb?.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                }
+                catch (e) {
+                    debug(`resumeJsDb: WAL checkpoint failed (nativeDb may already be closed): ${toErrorMessage(e)}`);
+                }
+            }
+            : undefined,
     };
     const { name: engineName, version: engineVersion } = getActiveEngine(ctx.engineOpts);
     ctx.engineName = engineName;
@@ -105,9 +116,18 @@ function setupPipeline(ctx) {
         try {
             ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
             ctx.nativeDb.initSchema();
+            // Checkpoint WAL through rusqlite so better-sqlite3 sees a clean DB
+            // with no cross-library WAL frames (#715, #717).
+            ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
         }
         catch (err) {
-            warn(`NativeDatabase init failed, falling back to JS: ${err.message}`);
+            warn(`NativeDatabase setup failed, falling back to JS: ${toErrorMessage(err)}`);
+            try {
+                ctx.nativeDb?.close();
+            }
+            catch (e) {
+                debug(`setupNativeDb: close failed during fallback: ${toErrorMessage(e)}`);
+            }
             ctx.nativeDb = undefined;
         }
         // Always run JS initSchema so better-sqlite3 sees the schema —
@@ -150,6 +170,59 @@ function formatTimingResult(ctx) {
         },
     };
 }
+// ── NativeDb lifecycle helpers ──────────────────────────────────────────
+/** Checkpoint WAL through rusqlite and close the native connection. */
+function closeNativeDb(ctx, label) {
+    if (!ctx.nativeDb)
+        return;
+    try {
+        ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+    }
+    catch (e) {
+        debug(`${label} WAL checkpoint failed: ${toErrorMessage(e)}`);
+    }
+    try {
+        ctx.nativeDb.close();
+    }
+    catch (e) {
+        debug(`${label} nativeDb close failed: ${toErrorMessage(e)}`);
+    }
+    ctx.nativeDb = undefined;
+}
+/** Try to reopen the native connection for a given pipeline phase. */
+function reopenNativeDb(ctx, label) {
+    const native = loadNative();
+    if (!native?.NativeDatabase)
+        return;
+    try {
+        ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
+    }
+    catch (e) {
+        debug(`reopen nativeDb for ${label} failed: ${toErrorMessage(e)}`);
+        ctx.nativeDb = undefined;
+    }
+}
+/** Close nativeDb and clear stale references in engineOpts. */
+function suspendNativeDb(ctx, label) {
+    closeNativeDb(ctx, label);
+    if (ctx.engineOpts?.nativeDb) {
+        ctx.engineOpts.nativeDb = undefined;
+    }
+}
+/**
+ * After native writes, reopen the JS db connection to get a fresh page cache.
+ * Rusqlite WAL truncation invalidates better-sqlite3's internal WAL index,
+ * causing SQLITE_CORRUPT on the next read (#715, #736).
+ */
+function refreshJsDb(ctx) {
+    try {
+        ctx.db.close();
+    }
+    catch (e) {
+        debug(`refreshJsDb close failed: ${toErrorMessage(e)}`);
+    }
+    ctx.db = openDb(ctx.dbPath);
+}
 // ── Pipeline stages execution ───────────────────────────────────────────
 async function runPipelineStages(ctx) {
     // Prevent dual-connection WAL corruption during pipeline stages: when both
@@ -159,58 +232,46 @@ async function runPipelineStages(ctx) {
     // that use suspendJsDb/resumeJsDb WAL checkpoint pattern (#696).
     const hadNativeDb = !!ctx.nativeDb;
     if (ctx.db && ctx.nativeDb) {
-        try {
-            ctx.nativeDb.close();
-        }
-        catch {
-            /* ignore close errors */
-        }
-        ctx.nativeDb = undefined;
-        // Also clear stale reference in engineOpts to prevent stages from
-        // calling methods on the closed NativeDatabase.
-        if (ctx.engineOpts?.nativeDb) {
-            ctx.engineOpts.nativeDb = undefined;
-        }
+        suspendNativeDb(ctx, 'pre-collect');
     }
     await collectFiles(ctx);
     await detectChanges(ctx);
     if (ctx.earlyExit)
         return;
     await parseFiles(ctx);
+    // Temporarily reopen nativeDb for insertNodes — it uses the WAL checkpoint
+    // guard internally (same pattern as feature modules). Closed again before
+    // resolveImports/buildEdges which don't yet have the guard (#709).
+    if (hadNativeDb && ctx.engineName === 'native') {
+        reopenNativeDb(ctx, 'insertNodes');
+    }
     await insertNodes(ctx);
+    // Close nativeDb after insertNodes — remaining pipeline stages use JS paths.
+    if (ctx.nativeDb && ctx.db) {
+        closeNativeDb(ctx, 'post-insertNodes');
+        refreshJsDb(ctx);
+    }
     await resolveImports(ctx);
     await buildEdges(ctx);
     await buildStructure(ctx);
     // Reopen nativeDb for feature modules (ast, cfg, complexity, dataflow)
     // which use suspendJsDb/resumeJsDb WAL checkpoint before native writes.
     if (hadNativeDb) {
-        const native = loadNative();
-        if (native?.NativeDatabase) {
-            try {
-                ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
-                if (ctx.engineOpts) {
-                    ctx.engineOpts.nativeDb = ctx.nativeDb;
-                }
-            }
-            catch {
-                ctx.nativeDb = undefined;
-                if (ctx.engineOpts) {
-                    ctx.engineOpts.nativeDb = undefined;
-                }
-            }
+        reopenNativeDb(ctx, 'analyses');
+        if (ctx.nativeDb && ctx.engineOpts) {
+            ctx.engineOpts.nativeDb = ctx.nativeDb;
+        }
+        if (!ctx.nativeDb && ctx.engineOpts) {
+            ctx.engineOpts.nativeDb = undefined;
         }
     }
     await runAnalyses(ctx);
-    // Close nativeDb after analyses — finalize uses JS paths for setBuildMeta
-    // and closeDbPair handles cleanup. Avoids dual-connection during finalize.
+    // Keep nativeDb open through finalize so persistBuildMetadata, advisory
+    // checks, and count queries use the native path.  closeDbPair inside
+    // finalize handles both connections.  Refresh the JS db so it has a
+    // valid page cache in case finalize falls back to JS paths (#751).
     if (ctx.nativeDb) {
-        try {
-            ctx.nativeDb.close();
-        }
-        catch {
-            /* ignore close errors */
-        }
-        ctx.nativeDb = undefined;
+        refreshJsDb(ctx);
     }
     await finalize(ctx);
 }
@@ -227,6 +288,217 @@ export async function buildGraph(rootDir, opts = {}) {
     ctx.rootDir = rootDir;
     try {
         setupPipeline(ctx);
+        // ── Rust orchestrator fast path (#695) ────────────────────────────
+        // When available, run the entire build pipeline in Rust with zero
+        // napi crossings (eliminates WAL dual-connection dance). Falls back
+        // to the JS pipeline on failure or when native is unavailable.
+        //
+        // Native addon 3.8.0 has a path bug: file_symbols keys are absolute
+        // paths but known_files are relative, causing zero import/call edges.
+        // Skip the orchestrator for affected versions (fixed in 3.9.0+).
+        const orchestratorBuggy = !!ctx.engineVersion && semverCompare(ctx.engineVersion, '3.8.0') <= 0;
+        const forceJs = process.env.CODEGRAPH_FORCE_JS_PIPELINE === '1' ||
+            ctx.forceFullRebuild ||
+            orchestratorBuggy ||
+            ctx.engineName !== 'native';
+        if (forceJs) {
+            const reason = process.env.CODEGRAPH_FORCE_JS_PIPELINE === '1'
+                ? 'CODEGRAPH_FORCE_JS_PIPELINE=1'
+                : ctx.forceFullRebuild
+                    ? 'forceFullRebuild'
+                    : orchestratorBuggy
+                        ? `buggy addon ${ctx.engineVersion}`
+                        : `engine=${ctx.engineName}`;
+            debug(`Skipping native orchestrator: ${reason}`);
+        }
+        if (!forceJs && ctx.nativeDb?.buildGraph) {
+            try {
+                const resultJson = ctx.nativeDb.buildGraph(ctx.rootDir, JSON.stringify(ctx.config), JSON.stringify(ctx.aliases), JSON.stringify(opts));
+                const result = JSON.parse(resultJson);
+                if (result.earlyExit) {
+                    info('No changes detected');
+                    closeDbPair({ db: ctx.db, nativeDb: ctx.nativeDb });
+                    return;
+                }
+                // Log incremental status to match JS pipeline output
+                const changed = result.changedCount ?? 0;
+                const removed = result.removedCount ?? 0;
+                if (!result.isFullBuild && (changed > 0 || removed > 0)) {
+                    info(`Incremental: ${changed} changed, ${removed} removed`);
+                }
+                // Map Rust timing fields to the JS BuildResult format.
+                // Rust handles collect+detect+parse+insert+resolve+edges+structure+roles.
+                const p = result.phases;
+                // Sync build_meta so JS-side version/engine checks work on next build.
+                // Note: the Rust orchestrator also writes codegraph_version (using
+                // CARGO_PKG_VERSION). We intentionally overwrite it here with the npm
+                // package version so that the JS-side "version changed → full rebuild"
+                // detection (line ~97) compares against the authoritative JS version.
+                // The two versions are kept in lockstep by the release process.
+                setBuildMeta(ctx.db, {
+                    engine: ctx.engineName,
+                    engine_version: ctx.engineVersion || '',
+                    codegraph_version: CODEGRAPH_VERSION,
+                    schema_version: String(ctx.schemaVersion),
+                    built_at: new Date().toISOString(),
+                    node_count: String(result.nodeCount ?? 0),
+                    edge_count: String(result.edgeCount ?? 0),
+                });
+                info(`Native build orchestrator completed: ${result.nodeCount ?? 0} nodes, ${result.edgeCount ?? 0} edges, ${result.fileCount ?? 0} files`);
+                // ── Run analysis phases (AST, complexity, CFG, dataflow) ──────
+                // Not yet ported to Rust. After the native orchestrator finishes,
+                // reconstruct a minimal fileSymbols map from the DB and run analyses
+                // via the JS engine (native standalone functions + WASM fallback).
+                let analysisTiming = { astMs: 0, complexityMs: 0, cfgMs: 0, dataflowMs: 0 };
+                const needsAnalysis = opts.ast !== false ||
+                    opts.complexity !== false ||
+                    opts.cfg !== false ||
+                    opts.dataflow !== false;
+                if (needsAnalysis) {
+                    // WAL handoff: checkpoint through rusqlite, close nativeDb,
+                    // reopen better-sqlite3 with a fresh page cache (#715, #736).
+                    try {
+                        ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                    }
+                    catch {
+                        /* ignore checkpoint errors */
+                    }
+                    try {
+                        ctx.nativeDb.close();
+                    }
+                    catch {
+                        /* ignore close errors */
+                    }
+                    ctx.nativeDb = undefined;
+                    try {
+                        ctx.db.close();
+                    }
+                    catch {
+                        /* ignore close errors */
+                    }
+                    ctx.db = null; // avoid closeDbPair operating on a stale handle
+                    try {
+                        ctx.db = openDb(ctx.dbPath);
+                    }
+                    catch (reopenErr) {
+                        warn(`Failed to reopen DB for analysis after native build: ${reopenErr.message}`);
+                        // Native build succeeded but we can't run analyses — return partial result
+                        return {
+                            phases: {
+                                setupMs: +((p.setupMs ?? 0) + (p.collectMs ?? 0) + (p.detectMs ?? 0)).toFixed(1),
+                                parseMs: +(p.parseMs ?? 0).toFixed(1),
+                                insertMs: +(p.insertMs ?? 0).toFixed(1),
+                                resolveMs: +(p.resolveMs ?? 0).toFixed(1),
+                                edgesMs: +(p.edgesMs ?? 0).toFixed(1),
+                                structureMs: +(p.structureMs ?? 0).toFixed(1),
+                                rolesMs: +(p.rolesMs ?? 0).toFixed(1),
+                                astMs: 0,
+                                complexityMs: 0,
+                                cfgMs: 0,
+                                dataflowMs: 0,
+                                finalizeMs: +(p.finalizeMs ?? 0).toFixed(1),
+                            },
+                        };
+                    }
+                    // Reconstruct minimal fileSymbols from DB for analysis visitors.
+                    // Each entry needs definitions with name/kind/line/endLine so the
+                    // engine can match complexity/CFG results to the right functions.
+                    // For incremental builds, scope to only the files that were parsed
+                    // in this cycle (matching the JS pipeline's behaviour in run-analyses.ts).
+                    const changedFiles = result.changedFiles;
+                    let query = 'SELECT file, name, kind, line, end_line as endLine FROM nodes WHERE file IS NOT NULL';
+                    const params = [];
+                    if (changedFiles && changedFiles.length > 0) {
+                        const placeholders = changedFiles.map(() => '?').join(',');
+                        query += ` AND file IN (${placeholders})`;
+                        params.push(...changedFiles);
+                    }
+                    query += ' ORDER BY file, line';
+                    const rows = ctx.db.prepare(query).all(...params);
+                    const fileSymbols = new Map();
+                    for (const row of rows) {
+                        let entry = fileSymbols.get(row.file);
+                        if (!entry) {
+                            entry = {
+                                definitions: [],
+                                calls: [],
+                                imports: [],
+                                classes: [],
+                                exports: [],
+                                typeMap: new Map(),
+                            };
+                            fileSymbols.set(row.file, entry);
+                        }
+                        entry.definitions.push({
+                            name: row.name,
+                            kind: row.kind,
+                            line: row.line,
+                            endLine: row.endLine ?? undefined,
+                        });
+                    }
+                    // Reopen nativeDb for analysis features (suspend/resume WAL pattern).
+                    const native = loadNative();
+                    if (native?.NativeDatabase) {
+                        try {
+                            ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
+                            if (ctx.engineOpts)
+                                ctx.engineOpts.nativeDb = ctx.nativeDb;
+                        }
+                        catch {
+                            ctx.nativeDb = undefined;
+                            if (ctx.engineOpts)
+                                ctx.engineOpts.nativeDb = undefined;
+                        }
+                    }
+                    try {
+                        const { runAnalyses: runAnalysesFn } = await import('../../../ast-analysis/engine.js');
+                        analysisTiming = await runAnalysesFn(ctx.db, fileSymbols, ctx.rootDir, opts, ctx.engineOpts);
+                    }
+                    catch (err) {
+                        warn(`Analysis phases failed after native build: ${toErrorMessage(err)}`);
+                    }
+                    // Close nativeDb after analyses
+                    if (ctx.nativeDb) {
+                        try {
+                            ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                        }
+                        catch {
+                            /* ignore checkpoint errors */
+                        }
+                        try {
+                            ctx.nativeDb.close();
+                        }
+                        catch {
+                            /* ignore close errors */
+                        }
+                        ctx.nativeDb = undefined;
+                        if (ctx.engineOpts)
+                            ctx.engineOpts.nativeDb = undefined;
+                    }
+                }
+                closeDbPair({ db: ctx.db, nativeDb: ctx.nativeDb });
+                return {
+                    phases: {
+                        setupMs: +((p.setupMs ?? 0) + (p.collectMs ?? 0) + (p.detectMs ?? 0)).toFixed(1),
+                        parseMs: +(p.parseMs ?? 0).toFixed(1),
+                        insertMs: +(p.insertMs ?? 0).toFixed(1),
+                        resolveMs: +(p.resolveMs ?? 0).toFixed(1),
+                        edgesMs: +(p.edgesMs ?? 0).toFixed(1),
+                        structureMs: +(p.structureMs ?? 0).toFixed(1),
+                        rolesMs: +(p.rolesMs ?? 0).toFixed(1),
+                        astMs: +(analysisTiming.astMs ?? 0).toFixed(1),
+                        complexityMs: +(analysisTiming.complexityMs ?? 0).toFixed(1),
+                        cfgMs: +(analysisTiming.cfgMs ?? 0).toFixed(1),
+                        dataflowMs: +(analysisTiming.dataflowMs ?? 0).toFixed(1),
+                        finalizeMs: +(p.finalizeMs ?? 0).toFixed(1),
+                    },
+                };
+            }
+            catch (err) {
+                warn(`Native build orchestrator failed, falling back to JS pipeline: ${toErrorMessage(err)}`);
+                // Fall through to JS pipeline
+            }
+        }
         await runPipelineStages(ctx);
     }
     catch (err) {

package/dist/domain/graph/builder/pipeline.js.map

@@ -1 +1 @@
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package/dist/domain/graph/builder/stages/build-edges.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build-edges.d.ts","sourceRoot":"","sources":["../../../../../src/domain/graph/builder/stages/build-edges.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAiiBrD,wBAAsB,UAAU,CAAC,GAAG,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CAqEpE"}
+{"version":3,"file":"build-edges.d.ts","sourceRoot":"","sources":["../../../../../src/domain/graph/builder/stages/build-edges.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AA6qBrD,wBAAsB,UAAU,CAAC,GAAG,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CA0FpE"}