@optave/codegraph 3.7.0 → 3.8.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (401) hide show
  1. package/README.md +28 -16
  2. package/dist/ast-analysis/engine.d.ts.map +1 -1
  3. package/dist/ast-analysis/engine.js +195 -30
  4. package/dist/ast-analysis/engine.js.map +1 -1
  5. package/dist/ast-analysis/metrics.d.ts +0 -3
  6. package/dist/ast-analysis/metrics.d.ts.map +1 -1
  7. package/dist/ast-analysis/metrics.js +30 -13
  8. package/dist/ast-analysis/metrics.js.map +1 -1
  9. package/dist/ast-analysis/rules/javascript.d.ts.map +1 -1
  10. package/dist/ast-analysis/rules/javascript.js +0 -1
  11. package/dist/ast-analysis/rules/javascript.js.map +1 -1
  12. package/dist/ast-analysis/shared.d.ts.map +1 -1
  13. package/dist/ast-analysis/shared.js +24 -19
  14. package/dist/ast-analysis/shared.js.map +1 -1
  15. package/dist/ast-analysis/visitor-utils.d.ts.map +1 -1
  16. package/dist/ast-analysis/visitor-utils.js +55 -39
  17. package/dist/ast-analysis/visitor-utils.js.map +1 -1
  18. package/dist/ast-analysis/visitor.d.ts.map +1 -1
  19. package/dist/ast-analysis/visitor.js +91 -70
  20. package/dist/ast-analysis/visitor.js.map +1 -1
  21. package/dist/ast-analysis/visitors/ast-store-visitor.d.ts.map +1 -1
  22. package/dist/ast-analysis/visitors/ast-store-visitor.js +52 -129
  23. package/dist/ast-analysis/visitors/ast-store-visitor.js.map +1 -1
  24. package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
  25. package/dist/ast-analysis/visitors/complexity-visitor.js +32 -39
  26. package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
  27. package/dist/ast-analysis/visitors/dataflow-visitor.d.ts.map +1 -1
  28. package/dist/ast-analysis/visitors/dataflow-visitor.js +57 -38
  29. package/dist/ast-analysis/visitors/dataflow-visitor.js.map +1 -1
  30. package/dist/cli/commands/ast.js +2 -2
  31. package/dist/cli/commands/ast.js.map +1 -1
  32. package/dist/cli/commands/watch.d.ts.map +1 -1
  33. package/dist/cli/commands/watch.js +16 -2
  34. package/dist/cli/commands/watch.js.map +1 -1
  35. package/dist/db/connection.d.ts.map +1 -1
  36. package/dist/db/connection.js +29 -26
  37. package/dist/db/connection.js.map +1 -1
  38. package/dist/db/query-builder.d.ts.map +1 -1
  39. package/dist/db/query-builder.js +16 -5
  40. package/dist/db/query-builder.js.map +1 -1
  41. package/dist/db/repository/base.d.ts +10 -0
  42. package/dist/db/repository/base.d.ts.map +1 -1
  43. package/dist/db/repository/base.js +17 -0
  44. package/dist/db/repository/base.js.map +1 -1
  45. package/dist/db/repository/native-repository.d.ts +6 -1
  46. package/dist/db/repository/native-repository.d.ts.map +1 -1
  47. package/dist/db/repository/native-repository.js +77 -1
  48. package/dist/db/repository/native-repository.js.map +1 -1
  49. package/dist/db/repository/nodes.d.ts.map +1 -1
  50. package/dist/db/repository/nodes.js +8 -4
  51. package/dist/db/repository/nodes.js.map +1 -1
  52. package/dist/db/repository/sqlite-repository.d.ts +3 -0
  53. package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
  54. package/dist/db/repository/sqlite-repository.js +26 -0
  55. package/dist/db/repository/sqlite-repository.js.map +1 -1
  56. package/dist/domain/analysis/brief.d.ts.map +1 -1
  57. package/dist/domain/analysis/brief.js +13 -17
  58. package/dist/domain/analysis/brief.js.map +1 -1
  59. package/dist/domain/analysis/context.d.ts.map +1 -1
  60. package/dist/domain/analysis/context.js +14 -11
  61. package/dist/domain/analysis/context.js.map +1 -1
  62. package/dist/domain/analysis/dependencies.d.ts.map +1 -1
  63. package/dist/domain/analysis/dependencies.js +53 -52
  64. package/dist/domain/analysis/dependencies.js.map +1 -1
  65. package/dist/domain/analysis/fn-impact.d.ts +2 -7
  66. package/dist/domain/analysis/fn-impact.d.ts.map +1 -1
  67. package/dist/domain/analysis/fn-impact.js +33 -31
  68. package/dist/domain/analysis/fn-impact.js.map +1 -1
  69. package/dist/domain/analysis/implementations.d.ts.map +1 -1
  70. package/dist/domain/analysis/implementations.js +11 -19
  71. package/dist/domain/analysis/implementations.js.map +1 -1
  72. package/dist/domain/analysis/module-map.d.ts.map +1 -1
  73. package/dist/domain/analysis/module-map.js +55 -76
  74. package/dist/domain/analysis/module-map.js.map +1 -1
  75. package/dist/domain/analysis/query-helpers.d.ts +7 -0
  76. package/dist/domain/analysis/query-helpers.d.ts.map +1 -1
  77. package/dist/domain/analysis/query-helpers.js +15 -1
  78. package/dist/domain/analysis/query-helpers.js.map +1 -1
  79. package/dist/domain/graph/builder/pipeline.d.ts.map +1 -1
  80. package/dist/domain/graph/builder/pipeline.js +315 -43
  81. package/dist/domain/graph/builder/pipeline.js.map +1 -1
  82. package/dist/domain/graph/builder/stages/build-edges.d.ts.map +1 -1
  83. package/dist/domain/graph/builder/stages/build-edges.js +106 -1
  84. package/dist/domain/graph/builder/stages/build-edges.js.map +1 -1
  85. package/dist/domain/graph/builder/stages/collect-files.d.ts.map +1 -1
  86. package/dist/domain/graph/builder/stages/collect-files.js +17 -5
  87. package/dist/domain/graph/builder/stages/collect-files.js.map +1 -1
  88. package/dist/domain/graph/builder/stages/detect-changes.d.ts.map +1 -1
  89. package/dist/domain/graph/builder/stages/detect-changes.js +99 -51
  90. package/dist/domain/graph/builder/stages/detect-changes.js.map +1 -1
  91. package/dist/domain/graph/builder/stages/finalize.d.ts.map +1 -1
  92. package/dist/domain/graph/builder/stages/finalize.js +34 -7
  93. package/dist/domain/graph/builder/stages/finalize.js.map +1 -1
  94. package/dist/domain/graph/builder/stages/insert-nodes.d.ts.map +1 -1
  95. package/dist/domain/graph/builder/stages/insert-nodes.js +50 -26
  96. package/dist/domain/graph/builder/stages/insert-nodes.js.map +1 -1
  97. package/dist/domain/graph/builder/stages/resolve-imports.d.ts.map +1 -1
  98. package/dist/domain/graph/builder/stages/resolve-imports.js +95 -84
  99. package/dist/domain/graph/builder/stages/resolve-imports.js.map +1 -1
  100. package/dist/domain/graph/cycles.d.ts +6 -0
  101. package/dist/domain/graph/cycles.d.ts.map +1 -1
  102. package/dist/domain/graph/cycles.js +114 -22
  103. package/dist/domain/graph/cycles.js.map +1 -1
  104. package/dist/domain/graph/resolve.js +1 -1
  105. package/dist/domain/graph/resolve.js.map +1 -1
  106. package/dist/domain/graph/watcher.d.ts +2 -0
  107. package/dist/domain/graph/watcher.d.ts.map +1 -1
  108. package/dist/domain/graph/watcher.js +170 -75
  109. package/dist/domain/graph/watcher.js.map +1 -1
  110. package/dist/domain/parser.d.ts +1 -6
  111. package/dist/domain/parser.d.ts.map +1 -1
  112. package/dist/domain/parser.js +101 -32
  113. package/dist/domain/parser.js.map +1 -1
  114. package/dist/domain/search/generator.js +1 -1
  115. package/dist/domain/search/generator.js.map +1 -1
  116. package/dist/domain/search/models.d.ts +4 -3
  117. package/dist/domain/search/models.d.ts.map +1 -1
  118. package/dist/domain/search/models.js +18 -5
  119. package/dist/domain/search/models.js.map +1 -1
  120. package/dist/domain/search/search/hybrid.d.ts.map +1 -1
  121. package/dist/domain/search/search/hybrid.js +29 -18
  122. package/dist/domain/search/search/hybrid.js.map +1 -1
  123. package/dist/extractors/clojure.d.ts +12 -0
  124. package/dist/extractors/clojure.d.ts.map +1 -0
  125. package/dist/extractors/clojure.js +245 -0
  126. package/dist/extractors/clojure.js.map +1 -0
  127. package/dist/extractors/cuda.d.ts +11 -0
  128. package/dist/extractors/cuda.d.ts.map +1 -0
  129. package/dist/extractors/cuda.js +302 -0
  130. package/dist/extractors/cuda.js.map +1 -0
  131. package/dist/extractors/erlang.d.ts +14 -0
  132. package/dist/extractors/erlang.d.ts.map +1 -0
  133. package/dist/extractors/erlang.js +239 -0
  134. package/dist/extractors/erlang.js.map +1 -0
  135. package/dist/extractors/fsharp.d.ts +13 -0
  136. package/dist/extractors/fsharp.d.ts.map +1 -0
  137. package/dist/extractors/fsharp.js +218 -0
  138. package/dist/extractors/fsharp.js.map +1 -0
  139. package/dist/extractors/gleam.d.ts +14 -0
  140. package/dist/extractors/gleam.d.ts.map +1 -0
  141. package/dist/extractors/gleam.js +229 -0
  142. package/dist/extractors/gleam.js.map +1 -0
  143. package/dist/extractors/go.js +36 -33
  144. package/dist/extractors/go.js.map +1 -1
  145. package/dist/extractors/groovy.d.ts +10 -0
  146. package/dist/extractors/groovy.d.ts.map +1 -0
  147. package/dist/extractors/groovy.js +304 -0
  148. package/dist/extractors/groovy.js.map +1 -0
  149. package/dist/extractors/helpers.d.ts.map +1 -1
  150. package/dist/extractors/helpers.js +40 -29
  151. package/dist/extractors/helpers.js.map +1 -1
  152. package/dist/extractors/index.d.ts +11 -0
  153. package/dist/extractors/index.d.ts.map +1 -1
  154. package/dist/extractors/index.js +11 -0
  155. package/dist/extractors/index.js.map +1 -1
  156. package/dist/extractors/java.js +58 -46
  157. package/dist/extractors/java.js.map +1 -1
  158. package/dist/extractors/javascript.js +46 -45
  159. package/dist/extractors/javascript.js.map +1 -1
  160. package/dist/extractors/julia.d.ts +16 -0
  161. package/dist/extractors/julia.d.ts.map +1 -0
  162. package/dist/extractors/julia.js +287 -0
  163. package/dist/extractors/julia.js.map +1 -0
  164. package/dist/extractors/kotlin.js +84 -78
  165. package/dist/extractors/kotlin.js.map +1 -1
  166. package/dist/extractors/objc.d.ts +9 -0
  167. package/dist/extractors/objc.d.ts.map +1 -0
  168. package/dist/extractors/objc.js +406 -0
  169. package/dist/extractors/objc.js.map +1 -0
  170. package/dist/extractors/ocaml.js +74 -0
  171. package/dist/extractors/ocaml.js.map +1 -1
  172. package/dist/extractors/python.js +29 -24
  173. package/dist/extractors/python.js.map +1 -1
  174. package/dist/extractors/r.d.ts +13 -0
  175. package/dist/extractors/r.d.ts.map +1 -0
  176. package/dist/extractors/r.js +251 -0
  177. package/dist/extractors/r.js.map +1 -0
  178. package/dist/extractors/rust.js +41 -32
  179. package/dist/extractors/rust.js.map +1 -1
  180. package/dist/extractors/solidity.d.ts +9 -0
  181. package/dist/extractors/solidity.d.ts.map +1 -0
  182. package/dist/extractors/solidity.js +365 -0
  183. package/dist/extractors/solidity.js.map +1 -0
  184. package/dist/extractors/swift.js +83 -81
  185. package/dist/extractors/swift.js.map +1 -1
  186. package/dist/extractors/verilog.d.ts +9 -0
  187. package/dist/extractors/verilog.d.ts.map +1 -0
  188. package/dist/extractors/verilog.js +286 -0
  189. package/dist/extractors/verilog.js.map +1 -0
  190. package/dist/extractors/zig.js +58 -60
  191. package/dist/extractors/zig.js.map +1 -1
  192. package/dist/features/ast.d.ts +16 -14
  193. package/dist/features/ast.d.ts.map +1 -1
  194. package/dist/features/ast.js +84 -83
  195. package/dist/features/ast.js.map +1 -1
  196. package/dist/features/audit.d.ts.map +1 -1
  197. package/dist/features/audit.js +8 -6
  198. package/dist/features/audit.js.map +1 -1
  199. package/dist/features/branch-compare.d.ts.map +1 -1
  200. package/dist/features/branch-compare.js +69 -72
  201. package/dist/features/branch-compare.js.map +1 -1
  202. package/dist/features/communities.d.ts.map +1 -1
  203. package/dist/features/communities.js +19 -7
  204. package/dist/features/communities.js.map +1 -1
  205. package/dist/features/complexity.d.ts.map +1 -1
  206. package/dist/features/complexity.js +120 -125
  207. package/dist/features/complexity.js.map +1 -1
  208. package/dist/features/dataflow.d.ts.map +1 -1
  209. package/dist/features/dataflow.js +136 -137
  210. package/dist/features/dataflow.js.map +1 -1
  211. package/dist/features/flow.d.ts.map +1 -1
  212. package/dist/features/flow.js +84 -79
  213. package/dist/features/flow.js.map +1 -1
  214. package/dist/features/structure-query.d.ts.map +1 -1
  215. package/dist/features/structure-query.js +69 -65
  216. package/dist/features/structure-query.js.map +1 -1
  217. package/dist/graph/algorithms/bfs.d.ts +2 -0
  218. package/dist/graph/algorithms/bfs.d.ts.map +1 -1
  219. package/dist/graph/algorithms/bfs.js +27 -0
  220. package/dist/graph/algorithms/bfs.js.map +1 -1
  221. package/dist/graph/algorithms/centrality.d.ts +2 -0
  222. package/dist/graph/algorithms/centrality.d.ts.map +1 -1
  223. package/dist/graph/algorithms/centrality.js +28 -0
  224. package/dist/graph/algorithms/centrality.js.map +1 -1
  225. package/dist/graph/algorithms/leiden/optimiser.d.ts.map +1 -1
  226. package/dist/graph/algorithms/leiden/optimiser.js +70 -55
  227. package/dist/graph/algorithms/leiden/optimiser.js.map +1 -1
  228. package/dist/graph/algorithms/leiden/partition.d.ts.map +1 -1
  229. package/dist/graph/algorithms/leiden/partition.js +288 -266
  230. package/dist/graph/algorithms/leiden/partition.js.map +1 -1
  231. package/dist/graph/algorithms/louvain.d.ts +3 -4
  232. package/dist/graph/algorithms/louvain.d.ts.map +1 -1
  233. package/dist/graph/algorithms/louvain.js +29 -0
  234. package/dist/graph/algorithms/louvain.js.map +1 -1
  235. package/dist/graph/algorithms/shortest-path.d.ts +2 -0
  236. package/dist/graph/algorithms/shortest-path.d.ts.map +1 -1
  237. package/dist/graph/algorithms/shortest-path.js +18 -1
  238. package/dist/graph/algorithms/shortest-path.js.map +1 -1
  239. package/dist/graph/model.d.ts.map +1 -1
  240. package/dist/graph/model.js +5 -1
  241. package/dist/graph/model.js.map +1 -1
  242. package/dist/infrastructure/config.d.ts.map +1 -1
  243. package/dist/infrastructure/config.js +6 -4
  244. package/dist/infrastructure/config.js.map +1 -1
  245. package/dist/infrastructure/suppress.d.ts +25 -0
  246. package/dist/infrastructure/suppress.d.ts.map +1 -0
  247. package/dist/infrastructure/suppress.js +43 -0
  248. package/dist/infrastructure/suppress.js.map +1 -0
  249. package/dist/mcp/server.d.ts.map +1 -1
  250. package/dist/mcp/server.js +29 -24
  251. package/dist/mcp/server.js.map +1 -1
  252. package/dist/presentation/dataflow.d.ts.map +1 -1
  253. package/dist/presentation/dataflow.js +47 -38
  254. package/dist/presentation/dataflow.js.map +1 -1
  255. package/dist/presentation/diff-impact-mermaid.d.ts.map +1 -1
  256. package/dist/presentation/diff-impact-mermaid.js +60 -51
  257. package/dist/presentation/diff-impact-mermaid.js.map +1 -1
  258. package/dist/presentation/queries-cli/exports.d.ts.map +1 -1
  259. package/dist/presentation/queries-cli/exports.js +20 -14
  260. package/dist/presentation/queries-cli/exports.js.map +1 -1
  261. package/dist/presentation/queries-cli/impact.d.ts.map +1 -1
  262. package/dist/presentation/queries-cli/impact.js +15 -13
  263. package/dist/presentation/queries-cli/impact.js.map +1 -1
  264. package/dist/presentation/queries-cli/inspect.d.ts.map +1 -1
  265. package/dist/presentation/queries-cli/inspect.js +101 -79
  266. package/dist/presentation/queries-cli/inspect.js.map +1 -1
  267. package/dist/presentation/queries-cli/overview.d.ts.map +1 -1
  268. package/dist/presentation/queries-cli/overview.js +25 -16
  269. package/dist/presentation/queries-cli/overview.js.map +1 -1
  270. package/dist/presentation/queries-cli/path.js +26 -20
  271. package/dist/presentation/queries-cli/path.js.map +1 -1
  272. package/dist/presentation/result-formatter.d.ts +10 -0
  273. package/dist/presentation/result-formatter.d.ts.map +1 -1
  274. package/dist/presentation/result-formatter.js +16 -1
  275. package/dist/presentation/result-formatter.js.map +1 -1
  276. package/dist/presentation/viewer.d.ts.map +1 -1
  277. package/dist/presentation/viewer.js +18 -12
  278. package/dist/presentation/viewer.js.map +1 -1
  279. package/dist/shared/errors.d.ts +5 -0
  280. package/dist/shared/errors.d.ts.map +1 -1
  281. package/dist/shared/errors.js +5 -0
  282. package/dist/shared/errors.js.map +1 -1
  283. package/dist/shared/hierarchy.d.ts +8 -2
  284. package/dist/shared/hierarchy.d.ts.map +1 -1
  285. package/dist/shared/hierarchy.js +42 -1
  286. package/dist/shared/hierarchy.js.map +1 -1
  287. package/dist/shared/normalize.d.ts +6 -1
  288. package/dist/shared/normalize.d.ts.map +1 -1
  289. package/dist/shared/normalize.js +20 -12
  290. package/dist/shared/normalize.js.map +1 -1
  291. package/dist/shared/paginate.d.ts +0 -9
  292. package/dist/shared/paginate.d.ts.map +1 -1
  293. package/dist/shared/paginate.js +0 -15
  294. package/dist/shared/paginate.js.map +1 -1
  295. package/dist/types.d.ts +129 -3
  296. package/dist/types.d.ts.map +1 -1
  297. package/grammars/tree-sitter-clojure.wasm +0 -0
  298. package/grammars/tree-sitter-cuda.wasm +0 -0
  299. package/grammars/tree-sitter-erlang.wasm +0 -0
  300. package/grammars/tree-sitter-fsharp.wasm +0 -0
  301. package/grammars/tree-sitter-gleam.wasm +0 -0
  302. package/grammars/tree-sitter-groovy.wasm +0 -0
  303. package/grammars/tree-sitter-julia.wasm +0 -0
  304. package/grammars/tree-sitter-objc.wasm +0 -0
  305. package/grammars/tree-sitter-ocaml_interface.wasm +0 -0
  306. package/grammars/tree-sitter-r.wasm +0 -0
  307. package/grammars/tree-sitter-solidity.wasm +0 -0
  308. package/grammars/tree-sitter-verilog.wasm +0 -0
  309. package/package.json +18 -7
  310. package/src/ast-analysis/engine.ts +245 -42
  311. package/src/ast-analysis/metrics.ts +33 -11
  312. package/src/ast-analysis/rules/javascript.ts +0 -1
  313. package/src/ast-analysis/shared.ts +33 -24
  314. package/src/ast-analysis/visitor-utils.ts +52 -32
  315. package/src/ast-analysis/visitor.ts +132 -71
  316. package/src/ast-analysis/visitors/ast-store-visitor.ts +49 -119
  317. package/src/ast-analysis/visitors/complexity-visitor.ts +35 -40
  318. package/src/ast-analysis/visitors/dataflow-visitor.ts +87 -43
  319. package/src/cli/commands/ast.ts +2 -2
  320. package/src/cli/commands/watch.ts +16 -2
  321. package/src/db/connection.ts +29 -28
  322. package/src/db/query-builder.ts +15 -3
  323. package/src/db/repository/base.ts +20 -0
  324. package/src/db/repository/native-repository.ts +79 -1
  325. package/src/db/repository/nodes.ts +13 -8
  326. package/src/db/repository/sqlite-repository.ts +29 -0
  327. package/src/domain/analysis/brief.ts +15 -25
  328. package/src/domain/analysis/context.ts +17 -10
  329. package/src/domain/analysis/dependencies.ts +67 -76
  330. package/src/domain/analysis/fn-impact.ts +36 -43
  331. package/src/domain/analysis/implementations.ts +11 -17
  332. package/src/domain/analysis/module-map.ts +58 -92
  333. package/src/domain/analysis/query-helpers.ts +18 -1
  334. package/src/domain/graph/builder/pipeline.ts +366 -41
  335. package/src/domain/graph/builder/stages/build-edges.ts +162 -1
  336. package/src/domain/graph/builder/stages/collect-files.ts +18 -7
  337. package/src/domain/graph/builder/stages/detect-changes.ts +110 -56
  338. package/src/domain/graph/builder/stages/finalize.ts +41 -11
  339. package/src/domain/graph/builder/stages/insert-nodes.ts +75 -39
  340. package/src/domain/graph/builder/stages/resolve-imports.ts +122 -100
  341. package/src/domain/graph/cycles.ts +110 -23
  342. package/src/domain/graph/resolve.ts +1 -1
  343. package/src/domain/graph/watcher.ts +202 -96
  344. package/src/domain/parser.ts +122 -28
  345. package/src/domain/search/generator.ts +1 -1
  346. package/src/domain/search/models.ts +17 -4
  347. package/src/domain/search/search/hybrid.ts +69 -51
  348. package/src/extractors/clojure.ts +273 -0
  349. package/src/extractors/cuda.ts +316 -0
  350. package/src/extractors/erlang.ts +252 -0
  351. package/src/extractors/fsharp.ts +253 -0
  352. package/src/extractors/gleam.ts +246 -0
  353. package/src/extractors/go.ts +43 -33
  354. package/src/extractors/groovy.ts +332 -0
  355. package/src/extractors/helpers.ts +37 -23
  356. package/src/extractors/index.ts +11 -0
  357. package/src/extractors/java.ts +66 -47
  358. package/src/extractors/javascript.ts +45 -46
  359. package/src/extractors/julia.ts +318 -0
  360. package/src/extractors/kotlin.ts +84 -77
  361. package/src/extractors/objc.ts +431 -0
  362. package/src/extractors/ocaml.ts +78 -0
  363. package/src/extractors/python.ts +31 -25
  364. package/src/extractors/r.ts +253 -0
  365. package/src/extractors/rust.ts +37 -29
  366. package/src/extractors/solidity.ts +394 -0
  367. package/src/extractors/swift.ts +81 -80
  368. package/src/extractors/verilog.ts +315 -0
  369. package/src/extractors/zig.ts +58 -61
  370. package/src/features/ast.ts +131 -112
  371. package/src/features/audit.ts +8 -6
  372. package/src/features/branch-compare.ts +105 -79
  373. package/src/features/communities.ts +25 -10
  374. package/src/features/complexity.ts +171 -134
  375. package/src/features/dataflow.ts +165 -175
  376. package/src/features/flow.ts +129 -92
  377. package/src/features/structure-query.ts +79 -64
  378. package/src/graph/algorithms/bfs.ts +34 -0
  379. package/src/graph/algorithms/centrality.ts +30 -0
  380. package/src/graph/algorithms/leiden/optimiser.ts +99 -55
  381. package/src/graph/algorithms/leiden/partition.ts +359 -294
  382. package/src/graph/algorithms/louvain.ts +31 -4
  383. package/src/graph/algorithms/shortest-path.ts +20 -1
  384. package/src/graph/model.ts +6 -1
  385. package/src/infrastructure/config.ts +6 -4
  386. package/src/infrastructure/suppress.ts +47 -0
  387. package/src/mcp/server.ts +53 -37
  388. package/src/presentation/dataflow.ts +50 -44
  389. package/src/presentation/diff-impact-mermaid.ts +104 -62
  390. package/src/presentation/queries-cli/exports.ts +21 -13
  391. package/src/presentation/queries-cli/impact.ts +15 -13
  392. package/src/presentation/queries-cli/inspect.ts +100 -81
  393. package/src/presentation/queries-cli/overview.ts +26 -16
  394. package/src/presentation/queries-cli/path.ts +33 -25
  395. package/src/presentation/result-formatter.ts +19 -1
  396. package/src/presentation/viewer.ts +42 -14
  397. package/src/shared/errors.ts +6 -0
  398. package/src/shared/hierarchy.ts +50 -2
  399. package/src/shared/normalize.ts +31 -12
  400. package/src/shared/paginate.ts +0 -17
  401. package/src/types.ts +138 -3
@@ -25,45 +25,51 @@ export interface HybridSearchResult {
25
25
  results: HybridResult[];
26
26
  }
27
27
 
28
- export async function hybridSearchData(
29
- query: string,
30
- customDbPath: string | undefined,
31
- opts: SemanticSearchOpts = {},
32
- ): Promise<HybridSearchResult | null> {
33
- const config = opts.config || loadConfig();
34
- const searchCfg = config.search || ({} as CodegraphConfig['search']);
35
- const limit = opts.limit ?? searchCfg.topK ?? 15;
36
- const k = opts.rrfK ?? searchCfg.rrfK ?? 60;
37
- const topK = (opts.limit ?? searchCfg.topK ?? 15) * 5;
38
-
39
- const queries =
40
- typeof query === 'string'
41
- ? query
42
- .split(';')
43
- .map((q) => q.trim())
44
- .filter((q) => q.length > 0)
45
- : [query];
28
+ interface RankedItem {
29
+ key: string;
30
+ rank: number;
31
+ source: 'bm25' | 'semantic';
32
+ name: string;
33
+ kind: string;
34
+ file: string;
35
+ line: number;
36
+ endLine?: number | null;
37
+ role?: string | null;
38
+ fileHash?: string | null;
39
+ bm25Score?: number;
40
+ similarity?: number;
41
+ }
46
42
 
47
- const checkDb = openReadonlyOrFail(customDbPath) as BetterSqlite3Database;
48
- const ftsAvailable = hasFtsIndex(checkDb);
49
- checkDb.close();
50
- if (!ftsAvailable) return null;
43
+ interface FusionEntry {
44
+ name: string;
45
+ kind: string;
46
+ file: string;
47
+ line: number;
48
+ endLine: number | null;
49
+ role: string | null;
50
+ fileHash: string | null;
51
+ rrfScore: number;
52
+ bm25Score: number | null;
53
+ bm25Rank: number | null;
54
+ similarity: number | null;
55
+ semanticRank: number | null;
56
+ }
51
57
 
52
- interface RankedItem {
53
- key: string;
54
- rank: number;
55
- source: 'bm25' | 'semantic';
56
- name: string;
57
- kind: string;
58
- file: string;
59
- line: number;
60
- endLine?: number | null;
61
- role?: string | null;
62
- fileHash?: string | null;
63
- bm25Score?: number;
64
- similarity?: number;
65
- }
58
+ /** Parse a semicolon-delimited query string into individual queries. */
59
+ function parseQueries(query: string): string[] {
60
+ return query
61
+ .split(';')
62
+ .map((q) => q.trim())
63
+ .filter((q) => q.length > 0);
64
+ }
66
65
 
66
+ /** Collect BM25 and semantic ranked lists for each query. */
67
+ async function collectRankedLists(
68
+ queries: string[],
69
+ customDbPath: string | undefined,
70
+ opts: SemanticSearchOpts,
71
+ topK: number,
72
+ ): Promise<RankedItem[][]> {
67
73
  const rankedLists: RankedItem[][] = [];
68
74
 
69
75
  for (const q of queries) {
@@ -96,22 +102,13 @@ export async function hybridSearchData(
96
102
  }
97
103
  }
98
104
 
99
- interface FusionEntry {
100
- name: string;
101
- kind: string;
102
- file: string;
103
- line: number;
104
- endLine: number | null;
105
- role: string | null;
106
- fileHash: string | null;
107
- rrfScore: number;
108
- bm25Score: number | null;
109
- bm25Rank: number | null;
110
- similarity: number | null;
111
- semanticRank: number | null;
112
- }
105
+ return rankedLists;
106
+ }
113
107
 
108
+ /** Reciprocal Rank Fusion: merge ranked lists into a single scored result set. */
109
+ function fuseResults(rankedLists: RankedItem[][], k: number, limit: number): HybridResult[] {
114
110
  const fusionMap = new Map<string, FusionEntry>();
111
+
115
112
  for (const list of rankedLists) {
116
113
  for (const item of list) {
117
114
  if (!fusionMap.has(item.key)) {
@@ -146,7 +143,7 @@ export async function hybridSearchData(
146
143
  }
147
144
  }
148
145
 
149
- const results: HybridResult[] = [...fusionMap.values()]
146
+ return [...fusionMap.values()]
150
147
  .sort((a, b) => b.rrfScore - a.rrfScore)
151
148
  .slice(0, limit)
152
149
  .map((e) => ({
@@ -163,6 +160,27 @@ export async function hybridSearchData(
163
160
  similarity: e.similarity,
164
161
  semanticRank: e.semanticRank,
165
162
  }));
163
+ }
164
+
165
+ export async function hybridSearchData(
166
+ query: string,
167
+ customDbPath: string | undefined,
168
+ opts: SemanticSearchOpts = {},
169
+ ): Promise<HybridSearchResult | null> {
170
+ const config = opts.config || loadConfig();
171
+ const searchCfg = config.search || ({} as CodegraphConfig['search']);
172
+ const limit = opts.limit ?? searchCfg.topK ?? 15;
173
+ const k = opts.rrfK ?? searchCfg.rrfK ?? 60;
174
+ const topK = (opts.limit ?? searchCfg.topK ?? 15) * 5;
175
+
176
+ const checkDb = openReadonlyOrFail(customDbPath) as BetterSqlite3Database;
177
+ const ftsAvailable = hasFtsIndex(checkDb);
178
+ checkDb.close();
179
+ if (!ftsAvailable) return null;
180
+
181
+ const queries = parseQueries(query);
182
+ const rankedLists = await collectRankedLists(queries, customDbPath, opts, topK);
183
+ const results = fuseResults(rankedLists, k, limit);
166
184
 
167
185
  return { results };
168
186
  }
@@ -0,0 +1,273 @@
1
+ import type { ExtractorOutput, SubDeclaration, TreeSitterNode, TreeSitterTree } from '../types.js';
2
+ import { nodeEndLine } from './helpers.js';
3
+
4
+ /**
5
+ * Extract symbols from Clojure files.
6
+ *
7
+ * Clojure tree-sitter grammar (sogaiu/tree-sitter-clojure) notes:
8
+ * - The grammar is minimal: everything is a list/vector/map/symbol
9
+ * - We detect definitions by the first symbol in a list: defn, def, defprotocol, etc.
10
+ * - Namespace: (ns name ...)
11
+ * - Imports: (:require ...) inside ns, or (require ...)
12
+ */
13
+ export function extractClojureSymbols(tree: TreeSitterTree, _filePath: string): ExtractorOutput {
14
+ const ctx: ExtractorOutput = {
15
+ definitions: [],
16
+ calls: [],
17
+ imports: [],
18
+ classes: [],
19
+ exports: [],
20
+ typeMap: new Map(),
21
+ };
22
+
23
+ walkClojureNode(tree.rootNode, ctx, null);
24
+ return ctx;
25
+ }
26
+
27
+ function walkClojureNode(
28
+ node: TreeSitterNode,
29
+ ctx: ExtractorOutput,
30
+ currentNs: string | null,
31
+ ): void {
32
+ let nextNs = currentNs;
33
+
34
+ if (node.type === 'list_lit') {
35
+ nextNs = handleListForm(node, ctx, currentNs) ?? currentNs;
36
+ }
37
+
38
+ for (let i = 0; i < node.childCount; i++) {
39
+ const child = node.child(i);
40
+ if (child) walkClojureNode(child, ctx, nextNs);
41
+ }
42
+ }
43
+
44
+ /** Returns new namespace name if this is an `ns` form, otherwise null. */
45
+ function handleListForm(
46
+ node: TreeSitterNode,
47
+ ctx: ExtractorOutput,
48
+ currentNs: string | null,
49
+ ): string | null {
50
+ const firstSym = findFirstSymbol(node);
51
+ if (!firstSym) return null;
52
+
53
+ const name = firstSym.text;
54
+
55
+ switch (name) {
56
+ case 'ns':
57
+ return handleNsForm(node, ctx);
58
+ case 'def':
59
+ case 'defonce':
60
+ handleDefForm(node, ctx, currentNs, 'variable');
61
+ return null;
62
+ case 'defn':
63
+ case 'defn-':
64
+ handleDefnForm(node, ctx, currentNs, name === 'defn-' ? 'private' : 'public');
65
+ return null;
66
+ case 'defmacro':
67
+ handleDefnForm(node, ctx, currentNs, 'public');
68
+ return null;
69
+ case 'defprotocol':
70
+ handleDefprotocol(node, ctx);
71
+ return null;
72
+ case 'defrecord':
73
+ case 'deftype':
74
+ handleDefrecord(node, ctx, name);
75
+ return null;
76
+ case 'defmulti':
77
+ handleDefForm(node, ctx, currentNs, 'function');
78
+ return null;
79
+ case 'defmethod':
80
+ handleDefnForm(node, ctx, currentNs, 'public');
81
+ return null;
82
+ case 'require':
83
+ case 'use':
84
+ case 'import':
85
+ handleImportForm(node, ctx, name);
86
+ return null;
87
+ default: {
88
+ // Regular function call
89
+ if (!name.startsWith(':') && !name.startsWith('(')) {
90
+ ctx.calls.push({ name, line: node.startPosition.row + 1 });
91
+ }
92
+ return null;
93
+ }
94
+ }
95
+ }
96
+
97
+ function findFirstSymbol(listNode: TreeSitterNode): TreeSitterNode | null {
98
+ for (let i = 0; i < listNode.childCount; i++) {
99
+ const child = listNode.child(i);
100
+ if (!child) continue;
101
+ // Skip delimiters and metadata
102
+ if ('()[]{}#'.includes(child.type) || child.type === 'meta_lit') continue;
103
+ if (child.type === 'sym_lit' || child.type === 'kwd_lit') return child;
104
+ break;
105
+ }
106
+ return null;
107
+ }
108
+
109
+ function findSecondSymbol(listNode: TreeSitterNode): TreeSitterNode | null {
110
+ let count = 0;
111
+ for (let i = 0; i < listNode.childCount; i++) {
112
+ const child = listNode.child(i);
113
+ if (!child) continue;
114
+ if ('()[]{}#'.includes(child.type) || child.type === 'meta_lit') continue;
115
+ if (child.type === 'sym_lit' || child.type === 'kwd_lit') {
116
+ count++;
117
+ if (count === 2) return child;
118
+ }
119
+ }
120
+ return null;
121
+ }
122
+
123
+ function handleNsForm(node: TreeSitterNode, ctx: ExtractorOutput): string | null {
124
+ const nameNode = findSecondSymbol(node);
125
+ if (!nameNode) return null;
126
+
127
+ const nsName = nameNode.text;
128
+ ctx.definitions.push({
129
+ name: nsName,
130
+ kind: 'module',
131
+ line: node.startPosition.row + 1,
132
+ endLine: nodeEndLine(node),
133
+ });
134
+
135
+ // Extract requires from ns form
136
+ for (let i = 0; i < node.childCount; i++) {
137
+ const child = node.child(i);
138
+ if (!child) continue;
139
+ if (child.type === 'list_lit') {
140
+ const kw = findFirstSymbol(child);
141
+ if (kw && (kw.text === ':require' || kw.text === ':import' || kw.text === ':use')) {
142
+ extractNsRequires(child, ctx);
143
+ }
144
+ }
145
+ }
146
+
147
+ return nsName;
148
+ }
149
+
150
+ function extractNsRequires(requireForm: TreeSitterNode, ctx: ExtractorOutput): void {
151
+ for (let i = 0; i < requireForm.childCount; i++) {
152
+ const child = requireForm.child(i);
153
+ if (!child) continue;
154
+ // Vector form: [some.ns :as alias]
155
+ if (child.type === 'vec_lit') {
156
+ const sym = findFirstSymbol(child);
157
+ if (sym) {
158
+ ctx.imports.push({
159
+ source: sym.text,
160
+ names: [sym.text.split('.').pop() || sym.text],
161
+ line: child.startPosition.row + 1,
162
+ });
163
+ }
164
+ }
165
+ // Symbol form: some.ns
166
+ if (child.type === 'sym_lit' && i > 0) {
167
+ const text = child.text;
168
+ if (!text.startsWith(':')) {
169
+ ctx.imports.push({
170
+ source: text,
171
+ names: [text.split('.').pop() || text],
172
+ line: child.startPosition.row + 1,
173
+ });
174
+ }
175
+ }
176
+ }
177
+ }
178
+
179
+ function handleDefForm(
180
+ node: TreeSitterNode,
181
+ ctx: ExtractorOutput,
182
+ currentNs: string | null,
183
+ kindOrFallback: 'variable' | 'function',
184
+ ): void {
185
+ const nameNode = findSecondSymbol(node);
186
+ if (!nameNode) return;
187
+
188
+ const rawName = nameNode.text;
189
+ const fullName = currentNs ? `${currentNs}/${rawName}` : rawName;
190
+
191
+ ctx.definitions.push({
192
+ name: fullName,
193
+ kind: kindOrFallback,
194
+ line: node.startPosition.row + 1,
195
+ endLine: nodeEndLine(node),
196
+ });
197
+ }
198
+
199
+ function handleDefnForm(
200
+ node: TreeSitterNode,
201
+ ctx: ExtractorOutput,
202
+ currentNs: string | null,
203
+ visibility: 'public' | 'private',
204
+ ): void {
205
+ const nameNode = findSecondSymbol(node);
206
+ if (!nameNode) return;
207
+
208
+ const rawName = nameNode.text;
209
+ const fullName = currentNs ? `${currentNs}/${rawName}` : rawName;
210
+ const params = extractClojureParams(node);
211
+
212
+ ctx.definitions.push({
213
+ name: fullName,
214
+ kind: 'function',
215
+ line: node.startPosition.row + 1,
216
+ endLine: nodeEndLine(node),
217
+ visibility,
218
+ children: params.length > 0 ? params : undefined,
219
+ });
220
+ }
221
+
222
+ function extractClojureParams(defnNode: TreeSitterNode): SubDeclaration[] {
223
+ const params: SubDeclaration[] = [];
224
+ // Find the parameter vector [x y z]
225
+ for (let i = 0; i < defnNode.childCount; i++) {
226
+ const child = defnNode.child(i);
227
+ if (!child || child.type !== 'vec_lit') continue;
228
+ for (let j = 0; j < child.childCount; j++) {
229
+ const param = child.child(j);
230
+ if (!param) continue;
231
+ if (param.type === 'sym_lit') {
232
+ params.push({ name: param.text, kind: 'parameter', line: param.startPosition.row + 1 });
233
+ }
234
+ }
235
+ break; // Only first vector is params
236
+ }
237
+ return params;
238
+ }
239
+
240
+ function handleDefprotocol(node: TreeSitterNode, ctx: ExtractorOutput): void {
241
+ const nameNode = findSecondSymbol(node);
242
+ if (!nameNode) return;
243
+
244
+ ctx.definitions.push({
245
+ name: nameNode.text,
246
+ kind: 'interface',
247
+ line: node.startPosition.row + 1,
248
+ endLine: nodeEndLine(node),
249
+ });
250
+ }
251
+
252
+ function handleDefrecord(node: TreeSitterNode, ctx: ExtractorOutput, keyword: string): void {
253
+ const nameNode = findSecondSymbol(node);
254
+ if (!nameNode) return;
255
+
256
+ ctx.definitions.push({
257
+ name: nameNode.text,
258
+ kind: keyword === 'defrecord' ? 'record' : 'type',
259
+ line: node.startPosition.row + 1,
260
+ endLine: nodeEndLine(node),
261
+ });
262
+ }
263
+
264
+ function handleImportForm(node: TreeSitterNode, ctx: ExtractorOutput, keyword: string): void {
265
+ const nameNode = findSecondSymbol(node);
266
+ if (!nameNode) return;
267
+
268
+ ctx.imports.push({
269
+ source: nameNode.text,
270
+ names: [keyword],
271
+ line: node.startPosition.row + 1,
272
+ });
273
+ }