@optave/codegraph 3.7.0 → 3.8.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +28 -16
- package/dist/ast-analysis/engine.d.ts.map +1 -1
- package/dist/ast-analysis/engine.js +195 -30
- package/dist/ast-analysis/engine.js.map +1 -1
- package/dist/ast-analysis/metrics.d.ts +0 -3
- package/dist/ast-analysis/metrics.d.ts.map +1 -1
- package/dist/ast-analysis/metrics.js +30 -13
- package/dist/ast-analysis/metrics.js.map +1 -1
- package/dist/ast-analysis/rules/javascript.d.ts.map +1 -1
- package/dist/ast-analysis/rules/javascript.js +0 -1
- package/dist/ast-analysis/rules/javascript.js.map +1 -1
- package/dist/ast-analysis/shared.d.ts.map +1 -1
- package/dist/ast-analysis/shared.js +24 -19
- package/dist/ast-analysis/shared.js.map +1 -1
- package/dist/ast-analysis/visitor-utils.d.ts.map +1 -1
- package/dist/ast-analysis/visitor-utils.js +55 -39
- package/dist/ast-analysis/visitor-utils.js.map +1 -1
- package/dist/ast-analysis/visitor.d.ts.map +1 -1
- package/dist/ast-analysis/visitor.js +91 -70
- package/dist/ast-analysis/visitor.js.map +1 -1
- package/dist/ast-analysis/visitors/ast-store-visitor.d.ts.map +1 -1
- package/dist/ast-analysis/visitors/ast-store-visitor.js +52 -129
- package/dist/ast-analysis/visitors/ast-store-visitor.js.map +1 -1
- package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
- package/dist/ast-analysis/visitors/complexity-visitor.js +32 -39
- package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
- package/dist/ast-analysis/visitors/dataflow-visitor.d.ts.map +1 -1
- package/dist/ast-analysis/visitors/dataflow-visitor.js +57 -38
- package/dist/ast-analysis/visitors/dataflow-visitor.js.map +1 -1
- package/dist/cli/commands/ast.js +2 -2
- package/dist/cli/commands/ast.js.map +1 -1
- package/dist/cli/commands/watch.d.ts.map +1 -1
- package/dist/cli/commands/watch.js +16 -2
- package/dist/cli/commands/watch.js.map +1 -1
- package/dist/db/connection.d.ts.map +1 -1
- package/dist/db/connection.js +29 -26
- package/dist/db/connection.js.map +1 -1
- package/dist/db/query-builder.d.ts.map +1 -1
- package/dist/db/query-builder.js +16 -5
- package/dist/db/query-builder.js.map +1 -1
- package/dist/db/repository/base.d.ts +10 -0
- package/dist/db/repository/base.d.ts.map +1 -1
- package/dist/db/repository/base.js +17 -0
- package/dist/db/repository/base.js.map +1 -1
- package/dist/db/repository/native-repository.d.ts +6 -1
- package/dist/db/repository/native-repository.d.ts.map +1 -1
- package/dist/db/repository/native-repository.js +77 -1
- package/dist/db/repository/native-repository.js.map +1 -1
- package/dist/db/repository/nodes.d.ts.map +1 -1
- package/dist/db/repository/nodes.js +8 -4
- package/dist/db/repository/nodes.js.map +1 -1
- package/dist/db/repository/sqlite-repository.d.ts +3 -0
- package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
- package/dist/db/repository/sqlite-repository.js +26 -0
- package/dist/db/repository/sqlite-repository.js.map +1 -1
- package/dist/domain/analysis/brief.d.ts.map +1 -1
- package/dist/domain/analysis/brief.js +13 -17
- package/dist/domain/analysis/brief.js.map +1 -1
- package/dist/domain/analysis/context.d.ts.map +1 -1
- package/dist/domain/analysis/context.js +14 -11
- package/dist/domain/analysis/context.js.map +1 -1
- package/dist/domain/analysis/dependencies.d.ts.map +1 -1
- package/dist/domain/analysis/dependencies.js +53 -52
- package/dist/domain/analysis/dependencies.js.map +1 -1
- package/dist/domain/analysis/fn-impact.d.ts +2 -7
- package/dist/domain/analysis/fn-impact.d.ts.map +1 -1
- package/dist/domain/analysis/fn-impact.js +33 -31
- package/dist/domain/analysis/fn-impact.js.map +1 -1
- package/dist/domain/analysis/implementations.d.ts.map +1 -1
- package/dist/domain/analysis/implementations.js +11 -19
- package/dist/domain/analysis/implementations.js.map +1 -1
- package/dist/domain/analysis/module-map.d.ts.map +1 -1
- package/dist/domain/analysis/module-map.js +55 -76
- package/dist/domain/analysis/module-map.js.map +1 -1
- package/dist/domain/analysis/query-helpers.d.ts +7 -0
- package/dist/domain/analysis/query-helpers.d.ts.map +1 -1
- package/dist/domain/analysis/query-helpers.js +15 -1
- package/dist/domain/analysis/query-helpers.js.map +1 -1
- package/dist/domain/graph/builder/pipeline.d.ts.map +1 -1
- package/dist/domain/graph/builder/pipeline.js +315 -43
- package/dist/domain/graph/builder/pipeline.js.map +1 -1
- package/dist/domain/graph/builder/stages/build-edges.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/build-edges.js +106 -1
- package/dist/domain/graph/builder/stages/build-edges.js.map +1 -1
- package/dist/domain/graph/builder/stages/collect-files.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/collect-files.js +17 -5
- package/dist/domain/graph/builder/stages/collect-files.js.map +1 -1
- package/dist/domain/graph/builder/stages/detect-changes.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/detect-changes.js +99 -51
- package/dist/domain/graph/builder/stages/detect-changes.js.map +1 -1
- package/dist/domain/graph/builder/stages/finalize.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/finalize.js +34 -7
- package/dist/domain/graph/builder/stages/finalize.js.map +1 -1
- package/dist/domain/graph/builder/stages/insert-nodes.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/insert-nodes.js +50 -26
- package/dist/domain/graph/builder/stages/insert-nodes.js.map +1 -1
- package/dist/domain/graph/builder/stages/resolve-imports.d.ts.map +1 -1
- package/dist/domain/graph/builder/stages/resolve-imports.js +95 -84
- package/dist/domain/graph/builder/stages/resolve-imports.js.map +1 -1
- package/dist/domain/graph/cycles.d.ts +6 -0
- package/dist/domain/graph/cycles.d.ts.map +1 -1
- package/dist/domain/graph/cycles.js +114 -22
- package/dist/domain/graph/cycles.js.map +1 -1
- package/dist/domain/graph/resolve.js +1 -1
- package/dist/domain/graph/resolve.js.map +1 -1
- package/dist/domain/graph/watcher.d.ts +2 -0
- package/dist/domain/graph/watcher.d.ts.map +1 -1
- package/dist/domain/graph/watcher.js +170 -75
- package/dist/domain/graph/watcher.js.map +1 -1
- package/dist/domain/parser.d.ts +1 -6
- package/dist/domain/parser.d.ts.map +1 -1
- package/dist/domain/parser.js +101 -32
- package/dist/domain/parser.js.map +1 -1
- package/dist/domain/search/generator.js +1 -1
- package/dist/domain/search/generator.js.map +1 -1
- package/dist/domain/search/models.d.ts +4 -3
- package/dist/domain/search/models.d.ts.map +1 -1
- package/dist/domain/search/models.js +18 -5
- package/dist/domain/search/models.js.map +1 -1
- package/dist/domain/search/search/hybrid.d.ts.map +1 -1
- package/dist/domain/search/search/hybrid.js +29 -18
- package/dist/domain/search/search/hybrid.js.map +1 -1
- package/dist/extractors/clojure.d.ts +12 -0
- package/dist/extractors/clojure.d.ts.map +1 -0
- package/dist/extractors/clojure.js +245 -0
- package/dist/extractors/clojure.js.map +1 -0
- package/dist/extractors/cuda.d.ts +11 -0
- package/dist/extractors/cuda.d.ts.map +1 -0
- package/dist/extractors/cuda.js +302 -0
- package/dist/extractors/cuda.js.map +1 -0
- package/dist/extractors/erlang.d.ts +14 -0
- package/dist/extractors/erlang.d.ts.map +1 -0
- package/dist/extractors/erlang.js +239 -0
- package/dist/extractors/erlang.js.map +1 -0
- package/dist/extractors/fsharp.d.ts +13 -0
- package/dist/extractors/fsharp.d.ts.map +1 -0
- package/dist/extractors/fsharp.js +218 -0
- package/dist/extractors/fsharp.js.map +1 -0
- package/dist/extractors/gleam.d.ts +14 -0
- package/dist/extractors/gleam.d.ts.map +1 -0
- package/dist/extractors/gleam.js +229 -0
- package/dist/extractors/gleam.js.map +1 -0
- package/dist/extractors/go.js +36 -33
- package/dist/extractors/go.js.map +1 -1
- package/dist/extractors/groovy.d.ts +10 -0
- package/dist/extractors/groovy.d.ts.map +1 -0
- package/dist/extractors/groovy.js +304 -0
- package/dist/extractors/groovy.js.map +1 -0
- package/dist/extractors/helpers.d.ts.map +1 -1
- package/dist/extractors/helpers.js +40 -29
- package/dist/extractors/helpers.js.map +1 -1
- package/dist/extractors/index.d.ts +11 -0
- package/dist/extractors/index.d.ts.map +1 -1
- package/dist/extractors/index.js +11 -0
- package/dist/extractors/index.js.map +1 -1
- package/dist/extractors/java.js +58 -46
- package/dist/extractors/java.js.map +1 -1
- package/dist/extractors/javascript.js +46 -45
- package/dist/extractors/javascript.js.map +1 -1
- package/dist/extractors/julia.d.ts +16 -0
- package/dist/extractors/julia.d.ts.map +1 -0
- package/dist/extractors/julia.js +287 -0
- package/dist/extractors/julia.js.map +1 -0
- package/dist/extractors/kotlin.js +84 -78
- package/dist/extractors/kotlin.js.map +1 -1
- package/dist/extractors/objc.d.ts +9 -0
- package/dist/extractors/objc.d.ts.map +1 -0
- package/dist/extractors/objc.js +406 -0
- package/dist/extractors/objc.js.map +1 -0
- package/dist/extractors/ocaml.js +74 -0
- package/dist/extractors/ocaml.js.map +1 -1
- package/dist/extractors/python.js +29 -24
- package/dist/extractors/python.js.map +1 -1
- package/dist/extractors/r.d.ts +13 -0
- package/dist/extractors/r.d.ts.map +1 -0
- package/dist/extractors/r.js +251 -0
- package/dist/extractors/r.js.map +1 -0
- package/dist/extractors/rust.js +41 -32
- package/dist/extractors/rust.js.map +1 -1
- package/dist/extractors/solidity.d.ts +9 -0
- package/dist/extractors/solidity.d.ts.map +1 -0
- package/dist/extractors/solidity.js +365 -0
- package/dist/extractors/solidity.js.map +1 -0
- package/dist/extractors/swift.js +83 -81
- package/dist/extractors/swift.js.map +1 -1
- package/dist/extractors/verilog.d.ts +9 -0
- package/dist/extractors/verilog.d.ts.map +1 -0
- package/dist/extractors/verilog.js +286 -0
- package/dist/extractors/verilog.js.map +1 -0
- package/dist/extractors/zig.js +58 -60
- package/dist/extractors/zig.js.map +1 -1
- package/dist/features/ast.d.ts +16 -14
- package/dist/features/ast.d.ts.map +1 -1
- package/dist/features/ast.js +84 -83
- package/dist/features/ast.js.map +1 -1
- package/dist/features/audit.d.ts.map +1 -1
- package/dist/features/audit.js +8 -6
- package/dist/features/audit.js.map +1 -1
- package/dist/features/branch-compare.d.ts.map +1 -1
- package/dist/features/branch-compare.js +69 -72
- package/dist/features/branch-compare.js.map +1 -1
- package/dist/features/communities.d.ts.map +1 -1
- package/dist/features/communities.js +19 -7
- package/dist/features/communities.js.map +1 -1
- package/dist/features/complexity.d.ts.map +1 -1
- package/dist/features/complexity.js +120 -125
- package/dist/features/complexity.js.map +1 -1
- package/dist/features/dataflow.d.ts.map +1 -1
- package/dist/features/dataflow.js +136 -137
- package/dist/features/dataflow.js.map +1 -1
- package/dist/features/flow.d.ts.map +1 -1
- package/dist/features/flow.js +84 -79
- package/dist/features/flow.js.map +1 -1
- package/dist/features/structure-query.d.ts.map +1 -1
- package/dist/features/structure-query.js +69 -65
- package/dist/features/structure-query.js.map +1 -1
- package/dist/graph/algorithms/bfs.d.ts +2 -0
- package/dist/graph/algorithms/bfs.d.ts.map +1 -1
- package/dist/graph/algorithms/bfs.js +27 -0
- package/dist/graph/algorithms/bfs.js.map +1 -1
- package/dist/graph/algorithms/centrality.d.ts +2 -0
- package/dist/graph/algorithms/centrality.d.ts.map +1 -1
- package/dist/graph/algorithms/centrality.js +28 -0
- package/dist/graph/algorithms/centrality.js.map +1 -1
- package/dist/graph/algorithms/leiden/optimiser.d.ts.map +1 -1
- package/dist/graph/algorithms/leiden/optimiser.js +70 -55
- package/dist/graph/algorithms/leiden/optimiser.js.map +1 -1
- package/dist/graph/algorithms/leiden/partition.d.ts.map +1 -1
- package/dist/graph/algorithms/leiden/partition.js +288 -266
- package/dist/graph/algorithms/leiden/partition.js.map +1 -1
- package/dist/graph/algorithms/louvain.d.ts +3 -4
- package/dist/graph/algorithms/louvain.d.ts.map +1 -1
- package/dist/graph/algorithms/louvain.js +29 -0
- package/dist/graph/algorithms/louvain.js.map +1 -1
- package/dist/graph/algorithms/shortest-path.d.ts +2 -0
- package/dist/graph/algorithms/shortest-path.d.ts.map +1 -1
- package/dist/graph/algorithms/shortest-path.js +18 -1
- package/dist/graph/algorithms/shortest-path.js.map +1 -1
- package/dist/graph/model.d.ts.map +1 -1
- package/dist/graph/model.js +5 -1
- package/dist/graph/model.js.map +1 -1
- package/dist/infrastructure/config.d.ts.map +1 -1
- package/dist/infrastructure/config.js +6 -4
- package/dist/infrastructure/config.js.map +1 -1
- package/dist/infrastructure/suppress.d.ts +25 -0
- package/dist/infrastructure/suppress.d.ts.map +1 -0
- package/dist/infrastructure/suppress.js +43 -0
- package/dist/infrastructure/suppress.js.map +1 -0
- package/dist/mcp/server.d.ts.map +1 -1
- package/dist/mcp/server.js +29 -24
- package/dist/mcp/server.js.map +1 -1
- package/dist/presentation/dataflow.d.ts.map +1 -1
- package/dist/presentation/dataflow.js +47 -38
- package/dist/presentation/dataflow.js.map +1 -1
- package/dist/presentation/diff-impact-mermaid.d.ts.map +1 -1
- package/dist/presentation/diff-impact-mermaid.js +60 -51
- package/dist/presentation/diff-impact-mermaid.js.map +1 -1
- package/dist/presentation/queries-cli/exports.d.ts.map +1 -1
- package/dist/presentation/queries-cli/exports.js +20 -14
- package/dist/presentation/queries-cli/exports.js.map +1 -1
- package/dist/presentation/queries-cli/impact.d.ts.map +1 -1
- package/dist/presentation/queries-cli/impact.js +15 -13
- package/dist/presentation/queries-cli/impact.js.map +1 -1
- package/dist/presentation/queries-cli/inspect.d.ts.map +1 -1
- package/dist/presentation/queries-cli/inspect.js +101 -79
- package/dist/presentation/queries-cli/inspect.js.map +1 -1
- package/dist/presentation/queries-cli/overview.d.ts.map +1 -1
- package/dist/presentation/queries-cli/overview.js +25 -16
- package/dist/presentation/queries-cli/overview.js.map +1 -1
- package/dist/presentation/queries-cli/path.js +26 -20
- package/dist/presentation/queries-cli/path.js.map +1 -1
- package/dist/presentation/result-formatter.d.ts +10 -0
- package/dist/presentation/result-formatter.d.ts.map +1 -1
- package/dist/presentation/result-formatter.js +16 -1
- package/dist/presentation/result-formatter.js.map +1 -1
- package/dist/presentation/viewer.d.ts.map +1 -1
- package/dist/presentation/viewer.js +18 -12
- package/dist/presentation/viewer.js.map +1 -1
- package/dist/shared/errors.d.ts +5 -0
- package/dist/shared/errors.d.ts.map +1 -1
- package/dist/shared/errors.js +5 -0
- package/dist/shared/errors.js.map +1 -1
- package/dist/shared/hierarchy.d.ts +8 -2
- package/dist/shared/hierarchy.d.ts.map +1 -1
- package/dist/shared/hierarchy.js +42 -1
- package/dist/shared/hierarchy.js.map +1 -1
- package/dist/shared/normalize.d.ts +6 -1
- package/dist/shared/normalize.d.ts.map +1 -1
- package/dist/shared/normalize.js +20 -12
- package/dist/shared/normalize.js.map +1 -1
- package/dist/shared/paginate.d.ts +0 -9
- package/dist/shared/paginate.d.ts.map +1 -1
- package/dist/shared/paginate.js +0 -15
- package/dist/shared/paginate.js.map +1 -1
- package/dist/types.d.ts +129 -3
- package/dist/types.d.ts.map +1 -1
- package/grammars/tree-sitter-clojure.wasm +0 -0
- package/grammars/tree-sitter-cuda.wasm +0 -0
- package/grammars/tree-sitter-erlang.wasm +0 -0
- package/grammars/tree-sitter-fsharp.wasm +0 -0
- package/grammars/tree-sitter-gleam.wasm +0 -0
- package/grammars/tree-sitter-groovy.wasm +0 -0
- package/grammars/tree-sitter-julia.wasm +0 -0
- package/grammars/tree-sitter-objc.wasm +0 -0
- package/grammars/tree-sitter-ocaml_interface.wasm +0 -0
- package/grammars/tree-sitter-r.wasm +0 -0
- package/grammars/tree-sitter-solidity.wasm +0 -0
- package/grammars/tree-sitter-verilog.wasm +0 -0
- package/package.json +18 -7
- package/src/ast-analysis/engine.ts +245 -42
- package/src/ast-analysis/metrics.ts +33 -11
- package/src/ast-analysis/rules/javascript.ts +0 -1
- package/src/ast-analysis/shared.ts +33 -24
- package/src/ast-analysis/visitor-utils.ts +52 -32
- package/src/ast-analysis/visitor.ts +132 -71
- package/src/ast-analysis/visitors/ast-store-visitor.ts +49 -119
- package/src/ast-analysis/visitors/complexity-visitor.ts +35 -40
- package/src/ast-analysis/visitors/dataflow-visitor.ts +87 -43
- package/src/cli/commands/ast.ts +2 -2
- package/src/cli/commands/watch.ts +16 -2
- package/src/db/connection.ts +29 -28
- package/src/db/query-builder.ts +15 -3
- package/src/db/repository/base.ts +20 -0
- package/src/db/repository/native-repository.ts +79 -1
- package/src/db/repository/nodes.ts +13 -8
- package/src/db/repository/sqlite-repository.ts +29 -0
- package/src/domain/analysis/brief.ts +15 -25
- package/src/domain/analysis/context.ts +17 -10
- package/src/domain/analysis/dependencies.ts +67 -76
- package/src/domain/analysis/fn-impact.ts +36 -43
- package/src/domain/analysis/implementations.ts +11 -17
- package/src/domain/analysis/module-map.ts +58 -92
- package/src/domain/analysis/query-helpers.ts +18 -1
- package/src/domain/graph/builder/pipeline.ts +366 -41
- package/src/domain/graph/builder/stages/build-edges.ts +162 -1
- package/src/domain/graph/builder/stages/collect-files.ts +18 -7
- package/src/domain/graph/builder/stages/detect-changes.ts +110 -56
- package/src/domain/graph/builder/stages/finalize.ts +41 -11
- package/src/domain/graph/builder/stages/insert-nodes.ts +75 -39
- package/src/domain/graph/builder/stages/resolve-imports.ts +122 -100
- package/src/domain/graph/cycles.ts +110 -23
- package/src/domain/graph/resolve.ts +1 -1
- package/src/domain/graph/watcher.ts +202 -96
- package/src/domain/parser.ts +122 -28
- package/src/domain/search/generator.ts +1 -1
- package/src/domain/search/models.ts +17 -4
- package/src/domain/search/search/hybrid.ts +69 -51
- package/src/extractors/clojure.ts +273 -0
- package/src/extractors/cuda.ts +316 -0
- package/src/extractors/erlang.ts +252 -0
- package/src/extractors/fsharp.ts +253 -0
- package/src/extractors/gleam.ts +246 -0
- package/src/extractors/go.ts +43 -33
- package/src/extractors/groovy.ts +332 -0
- package/src/extractors/helpers.ts +37 -23
- package/src/extractors/index.ts +11 -0
- package/src/extractors/java.ts +66 -47
- package/src/extractors/javascript.ts +45 -46
- package/src/extractors/julia.ts +318 -0
- package/src/extractors/kotlin.ts +84 -77
- package/src/extractors/objc.ts +431 -0
- package/src/extractors/ocaml.ts +78 -0
- package/src/extractors/python.ts +31 -25
- package/src/extractors/r.ts +253 -0
- package/src/extractors/rust.ts +37 -29
- package/src/extractors/solidity.ts +394 -0
- package/src/extractors/swift.ts +81 -80
- package/src/extractors/verilog.ts +315 -0
- package/src/extractors/zig.ts +58 -61
- package/src/features/ast.ts +131 -112
- package/src/features/audit.ts +8 -6
- package/src/features/branch-compare.ts +105 -79
- package/src/features/communities.ts +25 -10
- package/src/features/complexity.ts +171 -134
- package/src/features/dataflow.ts +165 -175
- package/src/features/flow.ts +129 -92
- package/src/features/structure-query.ts +79 -64
- package/src/graph/algorithms/bfs.ts +34 -0
- package/src/graph/algorithms/centrality.ts +30 -0
- package/src/graph/algorithms/leiden/optimiser.ts +99 -55
- package/src/graph/algorithms/leiden/partition.ts +359 -294
- package/src/graph/algorithms/louvain.ts +31 -4
- package/src/graph/algorithms/shortest-path.ts +20 -1
- package/src/graph/model.ts +6 -1
- package/src/infrastructure/config.ts +6 -4
- package/src/infrastructure/suppress.ts +47 -0
- package/src/mcp/server.ts +53 -37
- package/src/presentation/dataflow.ts +50 -44
- package/src/presentation/diff-impact-mermaid.ts +104 -62
- package/src/presentation/queries-cli/exports.ts +21 -13
- package/src/presentation/queries-cli/impact.ts +15 -13
- package/src/presentation/queries-cli/inspect.ts +100 -81
- package/src/presentation/queries-cli/overview.ts +26 -16
- package/src/presentation/queries-cli/path.ts +33 -25
- package/src/presentation/result-formatter.ts +19 -1
- package/src/presentation/viewer.ts +42 -14
- package/src/shared/errors.ts +6 -0
- package/src/shared/hierarchy.ts +50 -2
- package/src/shared/normalize.ts +31 -12
- package/src/shared/paginate.ts +0 -17
- package/src/types.ts +138 -3
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@@ -56,6 +56,34 @@ function u8get(a: Uint8Array, i: number): number {
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}
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/* ------------------------------------------------------------------ */
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/* Internal mutable state bucket shared by all extracted functions */
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/* ------------------------------------------------------------------ */
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interface PartitionState {
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graph: GraphAdapter;
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n: number;
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nodeCommunity: Int32Array;
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communityCount: number;
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communityTotalSize: Float64Array;
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communityNodeCount: Int32Array;
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communityInternalEdgeWeight: Float64Array;
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communityTotalStrength: Float64Array;
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communityTotalOutStrength: Float64Array;
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communityTotalInStrength: Float64Array;
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/* scratch arrays for neighbor accumulation */
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candidateCommunities: Int32Array;
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candidateCommunityCount: number;
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neighborEdgeWeightToCommunity: Float64Array;
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outEdgeWeightToCommunity: Float64Array;
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inEdgeWeightFromCommunity: Float64Array;
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isCandidateCommunity: Uint8Array;
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}
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/* ------------------------------------------------------------------ */
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/* Aggregate helpers (shared by initializeAggregates & compact) */
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/* ------------------------------------------------------------------ */
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/**
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* Accumulate per-community node-level totals (size, count, strength) into the
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* provided aggregate arrays. Both `initializeAggregates` and `compactCommunityIds`
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}
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}
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for (let i = 0; i < n; i++) nodeCommunity[i] = i;
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let communityCount: number = n;
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let communityTotalSize = new Float64Array(communityCount);
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let communityNodeCount = new Int32Array(communityCount);
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let communityInternalEdgeWeight = new Float64Array(communityCount);
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let communityTotalStrength = new Float64Array(communityCount);
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let communityTotalOutStrength = new Float64Array(communityCount);
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let communityTotalInStrength = new Float64Array(communityCount);
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const candidateCommunities = new Int32Array(n);
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let candidateCommunityCount: number = 0;
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const neighborEdgeWeightToCommunity = new Float64Array(n);
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const outEdgeWeightToCommunity = new Float64Array(n);
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const inEdgeWeightFromCommunity = new Float64Array(n);
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const isCandidateCommunity = new Uint8Array(n);
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function ensureCommCapacity(newCount: number): void {
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if (newCount <= communityTotalSize.length) return;
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const growTo: number = Math.max(newCount, Math.ceil(communityTotalSize.length * 1.5));
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communityTotalSize = growFloat(communityTotalSize, growTo);
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communityNodeCount = growInt(communityNodeCount, growTo);
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communityInternalEdgeWeight = growFloat(communityInternalEdgeWeight, growTo);
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communityTotalStrength = growFloat(communityTotalStrength, growTo);
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communityTotalOutStrength = growFloat(communityTotalOutStrength, growTo);
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communityTotalInStrength = growFloat(communityTotalInStrength, growTo);
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}
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/* ------------------------------------------------------------------ */
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/* Extracted: capacity management */
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/* ------------------------------------------------------------------ */
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function ensureCommCapacity(s: PartitionState, newCount: number): void {
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if (newCount <= s.communityTotalSize.length) return;
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const growTo: number = Math.max(newCount, Math.ceil(s.communityTotalSize.length * 1.5));
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s.communityTotalSize = growFloat(s.communityTotalSize, growTo);
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s.communityNodeCount = growInt(s.communityNodeCount, growTo);
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s.communityInternalEdgeWeight = growFloat(s.communityInternalEdgeWeight, growTo);
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s.communityTotalStrength = growFloat(s.communityTotalStrength, growTo);
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s.communityTotalOutStrength = growFloat(s.communityTotalOutStrength, growTo);
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s.communityTotalInStrength = growFloat(s.communityTotalInStrength, growTo);
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}
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/* ------------------------------------------------------------------ */
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/* Extracted: aggregate initialization */
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/* ------------------------------------------------------------------ */
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function initAggregates(s: PartitionState): void {
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s.communityTotalSize.fill(0);
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s.communityNodeCount.fill(0);
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s.communityInternalEdgeWeight.fill(0);
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s.communityTotalStrength.fill(0);
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s.communityTotalOutStrength.fill(0);
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s.communityTotalInStrength.fill(0);
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accumulateNodeAggregates(
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s.graph,
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s.nodeCommunity,
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s.n,
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s.communityTotalSize,
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s.communityNodeCount,
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s.communityInternalEdgeWeight,
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s.communityTotalStrength,
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s.communityTotalOutStrength,
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s.communityTotalInStrength,
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);
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accumulateInternalEdgeWeights(s.graph, s.nodeCommunity, s.n, s.communityInternalEdgeWeight);
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}
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/* ------------------------------------------------------------------ */
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/* Extracted: neighbor accumulation */
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/* ------------------------------------------------------------------ */
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function resetScratch(s: PartitionState): void {
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for (let i = 0; i < s.candidateCommunityCount; i++) {
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const c: number = iget(s.candidateCommunities, i);
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s.isCandidateCommunity[c] = 0;
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s.neighborEdgeWeightToCommunity[c] = 0;
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s.outEdgeWeightToCommunity[c] = 0;
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s.inEdgeWeightFromCommunity[c] = 0;
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}
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s.candidateCommunityCount = 0;
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}
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function touchCandidate(s: PartitionState, c: number): void {
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if (u8get(s.isCandidateCommunity, c)) return;
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s.isCandidateCommunity[c] = 1;
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s.candidateCommunities[s.candidateCommunityCount++] = c;
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}
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function accumulateNeighborWeights(s: PartitionState, v: number): number {
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resetScratch(s);
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const ci: number = iget(s.nodeCommunity, v);
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touchCandidate(s, ci);
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if (s.graph.directed) {
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const outL = s.graph.outEdges[v]!;
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for (let k = 0; k < outL.length; k++) {
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const j: number = outL[k]!.to;
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const w: number = outL[k]!.w;
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const cj: number = iget(s.nodeCommunity, j);
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touchCandidate(s, cj);
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s.outEdgeWeightToCommunity[cj] = fget(s.outEdgeWeightToCommunity, cj) + w;
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}
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const inL = s.graph.inEdges[v]!;
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for (let k = 0; k < inL.length; k++) {
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const i2: number = inL[k]!.from;
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const w: number = inL[k]!.w;
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const ci2: number = iget(s.nodeCommunity, i2);
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touchCandidate(s, ci2);
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s.inEdgeWeightFromCommunity[ci2] = fget(s.inEdgeWeightFromCommunity, ci2) + w;
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}
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} else {
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const list = s.graph.outEdges[v]!;
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for (let k = 0; k < list.length; k++) {
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const j: number = list[k]!.to;
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const w: number = list[k]!.w;
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const cj: number = iget(s.nodeCommunity, j);
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touchCandidate(s, cj);
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s.neighborEdgeWeightToCommunity[cj] = fget(s.neighborEdgeWeightToCommunity, cj) + w;
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}
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candidateCommunityCount = 0;
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}
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return s.candidateCommunityCount;
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}
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/* ------------------------------------------------------------------ */
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/* Extracted: modularity delta computations */
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/* ------------------------------------------------------------------ */
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function computeDeltaModularityUndirected(
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s: PartitionState,
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v: number,
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292
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newC: number,
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gamma: number = 1.0,
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): number {
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const oldC: number = iget(s.nodeCommunity, v);
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if (newC === oldC) return 0;
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const twoM: number = s.graph.totalWeight;
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298
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const strengthV: number = fget(s.graph.strengthOut, v);
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299
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const weightToNew: number =
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300
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newC < s.neighborEdgeWeightToCommunity.length
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? fget(s.neighborEdgeWeightToCommunity, newC) || 0
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: 0;
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const weightToOld: number = fget(s.neighborEdgeWeightToCommunity, oldC) || 0;
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304
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const totalStrengthNew: number =
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305
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newC < s.communityTotalStrength.length ? fget(s.communityTotalStrength, newC) : 0;
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306
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const totalStrengthOld: number = fget(s.communityTotalStrength, oldC);
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307
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const gain_remove: number = -(
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308
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+
weightToOld / twoM -
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309
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+
(gamma * (strengthV * totalStrengthOld)) / (twoM * twoM)
|
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310
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+
);
|
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311
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+
const gain_add: number =
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312
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+
weightToNew / twoM - (gamma * (strengthV * totalStrengthNew)) / (twoM * twoM);
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313
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+
return gain_remove + gain_add;
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314
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+
}
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315
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+
|
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316
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+
function computeDeltaModularityDirected(
|
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317
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+
s: PartitionState,
|
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318
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+
v: number,
|
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319
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+
newC: number,
|
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320
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gamma: number = 1.0,
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321
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+
): number {
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322
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+
const oldC: number = iget(s.nodeCommunity, v);
|
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323
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+
if (newC === oldC) return 0;
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324
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+
const totalEdgeWeight: number = s.graph.totalWeight;
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325
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+
const strengthOutV: number = fget(s.graph.strengthOut, v);
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326
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const strengthInV: number = fget(s.graph.strengthIn, v);
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327
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+
const inFromNew: number =
|
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328
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newC < s.inEdgeWeightFromCommunity.length ? fget(s.inEdgeWeightFromCommunity, newC) || 0 : 0;
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329
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+
const outToNew: number =
|
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330
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newC < s.outEdgeWeightToCommunity.length ? fget(s.outEdgeWeightToCommunity, newC) || 0 : 0;
|
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331
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+
const inFromOld: number = fget(s.inEdgeWeightFromCommunity, oldC) || 0;
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332
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+
const outToOld: number = fget(s.outEdgeWeightToCommunity, oldC) || 0;
|
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333
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+
const totalInStrengthNew: number =
|
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334
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+
newC < s.communityTotalInStrength.length ? fget(s.communityTotalInStrength, newC) : 0;
|
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335
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+
const totalOutStrengthNew: number =
|
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336
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+
newC < s.communityTotalOutStrength.length ? fget(s.communityTotalOutStrength, newC) : 0;
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337
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+
const totalInStrengthOld: number = fget(s.communityTotalInStrength, oldC);
|
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338
|
+
const totalOutStrengthOld: number = fget(s.communityTotalOutStrength, oldC);
|
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339
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+
// Self-loop correction + constant term (see modularity.ts diffModularityDirected)
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340
|
+
const selfW: number = fget(s.graph.selfLoop, v) || 0;
|
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341
|
+
const deltaInternal: number =
|
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342
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+
(inFromNew + outToNew - inFromOld - outToOld + 2 * selfW) / totalEdgeWeight;
|
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343
|
+
const deltaExpected: number =
|
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344
|
+
(gamma *
|
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345
|
+
(strengthOutV * (totalInStrengthNew - totalInStrengthOld) +
|
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346
|
+
strengthInV * (totalOutStrengthNew - totalOutStrengthOld) +
|
|
347
|
+
2 * strengthOutV * strengthInV)) /
|
|
348
|
+
(totalEdgeWeight * totalEdgeWeight);
|
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349
|
+
return deltaInternal - deltaExpected;
|
|
350
|
+
}
|
|
351
|
+
|
|
352
|
+
function computeDeltaCPM(s: PartitionState, v: number, newC: number, gamma: number = 1.0): number {
|
|
353
|
+
const oldC: number = iget(s.nodeCommunity, v);
|
|
354
|
+
if (newC === oldC) return 0;
|
|
355
|
+
let w_old: number;
|
|
356
|
+
let w_new: number;
|
|
357
|
+
let selfCorrection: number = 0;
|
|
358
|
+
if (s.graph.directed) {
|
|
359
|
+
w_old =
|
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360
|
+
(fget(s.outEdgeWeightToCommunity, oldC) || 0) +
|
|
361
|
+
(fget(s.inEdgeWeightFromCommunity, oldC) || 0);
|
|
362
|
+
w_new =
|
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363
|
+
newC < s.outEdgeWeightToCommunity.length
|
|
364
|
+
? (fget(s.outEdgeWeightToCommunity, newC) || 0) +
|
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365
|
+
(fget(s.inEdgeWeightFromCommunity, newC) || 0)
|
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366
|
+
: 0;
|
|
367
|
+
// Self-loop correction (see cpm.ts diffCPM)
|
|
368
|
+
selfCorrection = 2 * (fget(s.graph.selfLoop, v) || 0);
|
|
369
|
+
} else {
|
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370
|
+
w_old = fget(s.neighborEdgeWeightToCommunity, oldC) || 0;
|
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371
|
+
w_new =
|
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372
|
+
newC < s.neighborEdgeWeightToCommunity.length
|
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373
|
+
? fget(s.neighborEdgeWeightToCommunity, newC) || 0
|
|
374
|
+
: 0;
|
|
229
375
|
}
|
|
376
|
+
const nodeSz: number = fget(s.graph.size, v) || 1;
|
|
377
|
+
const sizeOld: number = fget(s.communityTotalSize, oldC) || 0;
|
|
378
|
+
const sizeNew: number = newC < s.communityTotalSize.length ? fget(s.communityTotalSize, newC) : 0;
|
|
379
|
+
return w_new - w_old + selfCorrection - gamma * nodeSz * (sizeNew - sizeOld + nodeSz);
|
|
380
|
+
}
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381
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238
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239
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-
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240
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-
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241
|
-
touch(cj);
|
|
242
|
-
outEdgeWeightToCommunity[cj] = fget(outEdgeWeightToCommunity, cj) + w;
|
|
243
|
-
}
|
|
244
|
-
const inL = graph.inEdges[v]!;
|
|
245
|
-
for (let k = 0; k < inL.length; k++) {
|
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246
|
-
const i2: number = inL[k]!.from;
|
|
247
|
-
const w: number = inL[k]!.w;
|
|
248
|
-
const ci2: number = iget(nodeCommunity, i2);
|
|
249
|
-
touch(ci2);
|
|
250
|
-
inEdgeWeightFromCommunity[ci2] = fget(inEdgeWeightFromCommunity, ci2) + w;
|
|
251
|
-
}
|
|
252
|
-
} else {
|
|
253
|
-
const list = graph.outEdges[v]!;
|
|
254
|
-
for (let k = 0; k < list.length; k++) {
|
|
255
|
-
const j: number = list[k]!.to;
|
|
256
|
-
const w: number = list[k]!.w;
|
|
257
|
-
const cj: number = iget(nodeCommunity, j);
|
|
258
|
-
touch(cj);
|
|
259
|
-
neighborEdgeWeightToCommunity[cj] = fget(neighborEdgeWeightToCommunity, cj) + w;
|
|
260
|
-
}
|
|
261
|
-
}
|
|
262
|
-
return candidateCommunityCount;
|
|
382
|
+
/* ------------------------------------------------------------------ */
|
|
383
|
+
/* Extracted: node move */
|
|
384
|
+
/* ------------------------------------------------------------------ */
|
|
385
|
+
|
|
386
|
+
function moveNode(s: PartitionState, v: number, newC: number): boolean {
|
|
387
|
+
const oldC: number = iget(s.nodeCommunity, v);
|
|
388
|
+
if (oldC === newC) return false;
|
|
389
|
+
if (newC >= s.communityCount) {
|
|
390
|
+
ensureCommCapacity(s, newC + 1);
|
|
391
|
+
s.communityCount = newC + 1;
|
|
263
392
|
}
|
|
393
|
+
const strengthOutV: number = fget(s.graph.strengthOut, v);
|
|
394
|
+
const strengthInV: number = fget(s.graph.strengthIn, v);
|
|
395
|
+
const selfLoopWeight: number = fget(s.graph.selfLoop, v);
|
|
396
|
+
const nodeSz: number = fget(s.graph.size, v);
|
|
264
397
|
|
|
265
|
-
|
|
266
|
-
|
|
267
|
-
|
|
268
|
-
|
|
269
|
-
|
|
270
|
-
|
|
271
|
-
|
|
272
|
-
|
|
273
|
-
|
|
274
|
-
|
|
275
|
-
|
|
276
|
-
|
|
277
|
-
const totalStrengthOld: number = fget(communityTotalStrength, oldC);
|
|
278
|
-
const gain_remove: number = -(
|
|
279
|
-
weightToOld / twoMUndirected -
|
|
280
|
-
(gamma * (strengthV * totalStrengthOld)) / (twoMUndirected * twoMUndirected)
|
|
281
|
-
);
|
|
282
|
-
const gain_add: number =
|
|
283
|
-
weightToNew / twoMUndirected -
|
|
284
|
-
(gamma * (strengthV * totalStrengthNew)) / (twoMUndirected * twoMUndirected);
|
|
285
|
-
return gain_remove + gain_add;
|
|
398
|
+
s.communityNodeCount[oldC] = iget(s.communityNodeCount, oldC) - 1;
|
|
399
|
+
s.communityNodeCount[newC] = iget(s.communityNodeCount, newC) + 1;
|
|
400
|
+
s.communityTotalSize[oldC] = fget(s.communityTotalSize, oldC) - nodeSz;
|
|
401
|
+
s.communityTotalSize[newC] = fget(s.communityTotalSize, newC) + nodeSz;
|
|
402
|
+
if (s.graph.directed) {
|
|
403
|
+
s.communityTotalOutStrength[oldC] = fget(s.communityTotalOutStrength, oldC) - strengthOutV;
|
|
404
|
+
s.communityTotalOutStrength[newC] = fget(s.communityTotalOutStrength, newC) + strengthOutV;
|
|
405
|
+
s.communityTotalInStrength[oldC] = fget(s.communityTotalInStrength, oldC) - strengthInV;
|
|
406
|
+
s.communityTotalInStrength[newC] = fget(s.communityTotalInStrength, newC) + strengthInV;
|
|
407
|
+
} else {
|
|
408
|
+
s.communityTotalStrength[oldC] = fget(s.communityTotalStrength, oldC) - strengthOutV;
|
|
409
|
+
s.communityTotalStrength[newC] = fget(s.communityTotalStrength, newC) + strengthOutV;
|
|
286
410
|
}
|
|
287
411
|
|
|
288
|
-
|
|
289
|
-
const
|
|
290
|
-
|
|
291
|
-
const totalEdgeWeight: number = graph.totalWeight;
|
|
292
|
-
const strengthOutV: number = fget(graph.strengthOut, v);
|
|
293
|
-
const strengthInV: number = fget(graph.strengthIn, v);
|
|
294
|
-
const inFromNew: number =
|
|
295
|
-
newC < inEdgeWeightFromCommunity.length ? fget(inEdgeWeightFromCommunity, newC) || 0 : 0;
|
|
412
|
+
if (s.graph.directed) {
|
|
413
|
+
const outToOld: number = fget(s.outEdgeWeightToCommunity, oldC) || 0;
|
|
414
|
+
const inFromOld: number = fget(s.inEdgeWeightFromCommunity, oldC) || 0;
|
|
296
415
|
const outToNew: number =
|
|
297
|
-
newC < outEdgeWeightToCommunity.length ? fget(outEdgeWeightToCommunity, newC) || 0 : 0;
|
|
298
|
-
const
|
|
299
|
-
|
|
300
|
-
|
|
301
|
-
|
|
302
|
-
|
|
303
|
-
|
|
304
|
-
|
|
305
|
-
|
|
306
|
-
|
|
307
|
-
const
|
|
308
|
-
const
|
|
309
|
-
|
|
310
|
-
|
|
311
|
-
|
|
312
|
-
|
|
313
|
-
strengthInV * (totalOutStrengthNew - totalOutStrengthOld) +
|
|
314
|
-
2 * strengthOutV * strengthInV)) /
|
|
315
|
-
(totalEdgeWeight * totalEdgeWeight);
|
|
316
|
-
return deltaInternal - deltaExpected;
|
|
416
|
+
newC < s.outEdgeWeightToCommunity.length ? fget(s.outEdgeWeightToCommunity, newC) || 0 : 0;
|
|
417
|
+
const inFromNew: number =
|
|
418
|
+
newC < s.inEdgeWeightFromCommunity.length ? fget(s.inEdgeWeightFromCommunity, newC) || 0 : 0;
|
|
419
|
+
// outToOld/inFromOld already include the self-loop weight (self-loops are
|
|
420
|
+
// in outEdges/inEdges), so subtract it once to avoid triple-counting.
|
|
421
|
+
s.communityInternalEdgeWeight[oldC] =
|
|
422
|
+
fget(s.communityInternalEdgeWeight, oldC) - (outToOld + inFromOld - selfLoopWeight);
|
|
423
|
+
s.communityInternalEdgeWeight[newC] =
|
|
424
|
+
fget(s.communityInternalEdgeWeight, newC) + (outToNew + inFromNew + selfLoopWeight);
|
|
425
|
+
} else {
|
|
426
|
+
const weightToOld: number = fget(s.neighborEdgeWeightToCommunity, oldC) || 0;
|
|
427
|
+
const weightToNew: number = fget(s.neighborEdgeWeightToCommunity, newC) || 0;
|
|
428
|
+
s.communityInternalEdgeWeight[oldC] =
|
|
429
|
+
fget(s.communityInternalEdgeWeight, oldC) - (2 * weightToOld + selfLoopWeight);
|
|
430
|
+
s.communityInternalEdgeWeight[newC] =
|
|
431
|
+
fget(s.communityInternalEdgeWeight, newC) + (2 * weightToNew + selfLoopWeight);
|
|
317
432
|
}
|
|
318
433
|
|
|
319
|
-
|
|
320
|
-
|
|
321
|
-
|
|
322
|
-
let w_old: number;
|
|
323
|
-
let w_new: number;
|
|
324
|
-
let selfCorrection: number = 0;
|
|
325
|
-
if (graph.directed) {
|
|
326
|
-
w_old =
|
|
327
|
-
(fget(outEdgeWeightToCommunity, oldC) || 0) + (fget(inEdgeWeightFromCommunity, oldC) || 0);
|
|
328
|
-
w_new =
|
|
329
|
-
newC < outEdgeWeightToCommunity.length
|
|
330
|
-
? (fget(outEdgeWeightToCommunity, newC) || 0) +
|
|
331
|
-
(fget(inEdgeWeightFromCommunity, newC) || 0)
|
|
332
|
-
: 0;
|
|
333
|
-
// Self-loop correction (see cpm.ts diffCPM)
|
|
334
|
-
selfCorrection = 2 * (fget(graph.selfLoop, v) || 0);
|
|
335
|
-
} else {
|
|
336
|
-
w_old = fget(neighborEdgeWeightToCommunity, oldC) || 0;
|
|
337
|
-
w_new =
|
|
338
|
-
newC < neighborEdgeWeightToCommunity.length
|
|
339
|
-
? fget(neighborEdgeWeightToCommunity, newC) || 0
|
|
340
|
-
: 0;
|
|
341
|
-
}
|
|
342
|
-
const nodeSz: number = fget(graph.size, v) || 1;
|
|
343
|
-
const sizeOld: number = fget(communityTotalSize, oldC) || 0;
|
|
344
|
-
const sizeNew: number = newC < communityTotalSize.length ? fget(communityTotalSize, newC) : 0;
|
|
345
|
-
return w_new - w_old + selfCorrection - gamma * nodeSz * (sizeNew - sizeOld + nodeSz);
|
|
346
|
-
}
|
|
434
|
+
s.nodeCommunity[v] = newC;
|
|
435
|
+
return true;
|
|
436
|
+
}
|
|
347
437
|
|
|
348
|
-
|
|
349
|
-
|
|
350
|
-
|
|
351
|
-
if (newC >= communityCount) {
|
|
352
|
-
ensureCommCapacity(newC + 1);
|
|
353
|
-
communityCount = newC + 1;
|
|
354
|
-
}
|
|
355
|
-
const strengthOutV: number = fget(graph.strengthOut, v);
|
|
356
|
-
const strengthInV: number = fget(graph.strengthIn, v);
|
|
357
|
-
const selfLoopWeight: number = fget(graph.selfLoop, v);
|
|
358
|
-
const nodeSz: number = fget(graph.size, v);
|
|
359
|
-
|
|
360
|
-
communityNodeCount[oldC] = iget(communityNodeCount, oldC) - 1;
|
|
361
|
-
communityNodeCount[newC] = iget(communityNodeCount, newC) + 1;
|
|
362
|
-
communityTotalSize[oldC] = fget(communityTotalSize, oldC) - nodeSz;
|
|
363
|
-
communityTotalSize[newC] = fget(communityTotalSize, newC) + nodeSz;
|
|
364
|
-
if (graph.directed) {
|
|
365
|
-
communityTotalOutStrength[oldC] = fget(communityTotalOutStrength, oldC) - strengthOutV;
|
|
366
|
-
communityTotalOutStrength[newC] = fget(communityTotalOutStrength, newC) + strengthOutV;
|
|
367
|
-
communityTotalInStrength[oldC] = fget(communityTotalInStrength, oldC) - strengthInV;
|
|
368
|
-
communityTotalInStrength[newC] = fget(communityTotalInStrength, newC) + strengthInV;
|
|
369
|
-
} else {
|
|
370
|
-
communityTotalStrength[oldC] = fget(communityTotalStrength, oldC) - strengthOutV;
|
|
371
|
-
communityTotalStrength[newC] = fget(communityTotalStrength, newC) + strengthOutV;
|
|
372
|
-
}
|
|
438
|
+
/* ------------------------------------------------------------------ */
|
|
439
|
+
/* Extracted: community compaction */
|
|
440
|
+
/* ------------------------------------------------------------------ */
|
|
373
441
|
|
|
374
|
-
|
|
375
|
-
|
|
376
|
-
|
|
377
|
-
|
|
378
|
-
newC < outEdgeWeightToCommunity.length ? fget(outEdgeWeightToCommunity, newC) || 0 : 0;
|
|
379
|
-
const inFromNew: number =
|
|
380
|
-
newC < inEdgeWeightFromCommunity.length ? fget(inEdgeWeightFromCommunity, newC) || 0 : 0;
|
|
381
|
-
// outToOld/inFromOld already include the self-loop weight (self-loops are
|
|
382
|
-
// in outEdges/inEdges), so subtract it once to avoid triple-counting.
|
|
383
|
-
communityInternalEdgeWeight[oldC] =
|
|
384
|
-
fget(communityInternalEdgeWeight, oldC) - (outToOld + inFromOld - selfLoopWeight);
|
|
385
|
-
communityInternalEdgeWeight[newC] =
|
|
386
|
-
fget(communityInternalEdgeWeight, newC) + (outToNew + inFromNew + selfLoopWeight);
|
|
387
|
-
} else {
|
|
388
|
-
const weightToOld: number = fget(neighborEdgeWeightToCommunity, oldC) || 0;
|
|
389
|
-
const weightToNew: number = fget(neighborEdgeWeightToCommunity, newC) || 0;
|
|
390
|
-
communityInternalEdgeWeight[oldC] =
|
|
391
|
-
fget(communityInternalEdgeWeight, oldC) - (2 * weightToOld + selfLoopWeight);
|
|
392
|
-
communityInternalEdgeWeight[newC] =
|
|
393
|
-
fget(communityInternalEdgeWeight, newC) + (2 * weightToNew + selfLoopWeight);
|
|
394
|
-
}
|
|
442
|
+
function compactIds(s: PartitionState, opts: CompactOptions = {}): void {
|
|
443
|
+
const ids: number[] = [];
|
|
444
|
+
for (let c = 0; c < s.communityCount; c++) if (iget(s.communityNodeCount, c) > 0) ids.push(c);
|
|
445
|
+
buildSortedCommunityIds(ids, opts, s.communityTotalSize, s.communityNodeCount);
|
|
395
446
|
|
|
396
|
-
|
|
397
|
-
|
|
398
|
-
|
|
447
|
+
const newId = new Int32Array(s.communityCount).fill(-1);
|
|
448
|
+
ids.forEach((c, i) => {
|
|
449
|
+
newId[c] = i;
|
|
450
|
+
});
|
|
451
|
+
for (let i = 0; i < s.nodeCommunity.length; i++)
|
|
452
|
+
s.nodeCommunity[i] = iget(newId, iget(s.nodeCommunity, i));
|
|
399
453
|
|
|
400
|
-
|
|
401
|
-
|
|
402
|
-
|
|
403
|
-
|
|
454
|
+
const remappedCount: number = ids.length;
|
|
455
|
+
const newTotalSize = new Float64Array(remappedCount);
|
|
456
|
+
const newNodeCount = new Int32Array(remappedCount);
|
|
457
|
+
const newInternalEdgeWeight = new Float64Array(remappedCount);
|
|
458
|
+
const newTotalStrength = new Float64Array(remappedCount);
|
|
459
|
+
const newTotalOutStrength = new Float64Array(remappedCount);
|
|
460
|
+
const newTotalInStrength = new Float64Array(remappedCount);
|
|
461
|
+
accumulateNodeAggregates(
|
|
462
|
+
s.graph,
|
|
463
|
+
s.nodeCommunity,
|
|
464
|
+
s.n,
|
|
465
|
+
newTotalSize,
|
|
466
|
+
newNodeCount,
|
|
467
|
+
newInternalEdgeWeight,
|
|
468
|
+
newTotalStrength,
|
|
469
|
+
newTotalOutStrength,
|
|
470
|
+
newTotalInStrength,
|
|
471
|
+
);
|
|
472
|
+
accumulateInternalEdgeWeights(s.graph, s.nodeCommunity, s.n, newInternalEdgeWeight);
|
|
404
473
|
|
|
405
|
-
|
|
406
|
-
|
|
407
|
-
|
|
408
|
-
|
|
409
|
-
|
|
410
|
-
|
|
411
|
-
|
|
412
|
-
|
|
413
|
-
const newTotalSize = new Float64Array(remappedCount);
|
|
414
|
-
const newNodeCount = new Int32Array(remappedCount);
|
|
415
|
-
const newInternalEdgeWeight = new Float64Array(remappedCount);
|
|
416
|
-
const newTotalStrength = new Float64Array(remappedCount);
|
|
417
|
-
const newTotalOutStrength = new Float64Array(remappedCount);
|
|
418
|
-
const newTotalInStrength = new Float64Array(remappedCount);
|
|
419
|
-
accumulateNodeAggregates(
|
|
420
|
-
graph,
|
|
421
|
-
nodeCommunity,
|
|
422
|
-
n,
|
|
423
|
-
newTotalSize,
|
|
424
|
-
newNodeCount,
|
|
425
|
-
newInternalEdgeWeight,
|
|
426
|
-
newTotalStrength,
|
|
427
|
-
newTotalOutStrength,
|
|
428
|
-
newTotalInStrength,
|
|
429
|
-
);
|
|
430
|
-
accumulateInternalEdgeWeights(graph, nodeCommunity, n, newInternalEdgeWeight);
|
|
431
|
-
|
|
432
|
-
communityCount = remappedCount;
|
|
433
|
-
communityTotalSize = newTotalSize;
|
|
434
|
-
communityNodeCount = newNodeCount;
|
|
435
|
-
communityInternalEdgeWeight = newInternalEdgeWeight;
|
|
436
|
-
communityTotalStrength = newTotalStrength;
|
|
437
|
-
communityTotalOutStrength = newTotalOutStrength;
|
|
438
|
-
communityTotalInStrength = newTotalInStrength;
|
|
439
|
-
}
|
|
474
|
+
s.communityCount = remappedCount;
|
|
475
|
+
s.communityTotalSize = newTotalSize;
|
|
476
|
+
s.communityNodeCount = newNodeCount;
|
|
477
|
+
s.communityInternalEdgeWeight = newInternalEdgeWeight;
|
|
478
|
+
s.communityTotalStrength = newTotalStrength;
|
|
479
|
+
s.communityTotalOutStrength = newTotalOutStrength;
|
|
480
|
+
s.communityTotalInStrength = newTotalInStrength;
|
|
481
|
+
}
|
|
440
482
|
|
|
441
|
-
|
|
442
|
-
|
|
443
|
-
|
|
444
|
-
for (let i = 0; i < n; i++) comms[iget(nodeCommunity, i)]!.push(i);
|
|
445
|
-
return comms;
|
|
446
|
-
}
|
|
483
|
+
/* ------------------------------------------------------------------ */
|
|
484
|
+
/* Factory: thin wrapper that wires state to extracted functions */
|
|
485
|
+
/* ------------------------------------------------------------------ */
|
|
447
486
|
|
|
448
|
-
|
|
449
|
-
|
|
450
|
-
|
|
451
|
-
|
|
452
|
-
|
|
453
|
-
|
|
487
|
+
export function makePartition(graph: GraphAdapter): Partition {
|
|
488
|
+
const n: number = graph.n;
|
|
489
|
+
const nodeCommunity = new Int32Array(n);
|
|
490
|
+
for (let i = 0; i < n; i++) nodeCommunity[i] = i;
|
|
491
|
+
|
|
492
|
+
const s: PartitionState = {
|
|
493
|
+
graph,
|
|
494
|
+
n,
|
|
495
|
+
nodeCommunity,
|
|
496
|
+
communityCount: n,
|
|
497
|
+
communityTotalSize: new Float64Array(n),
|
|
498
|
+
communityNodeCount: new Int32Array(n),
|
|
499
|
+
communityInternalEdgeWeight: new Float64Array(n),
|
|
500
|
+
communityTotalStrength: new Float64Array(n),
|
|
501
|
+
communityTotalOutStrength: new Float64Array(n),
|
|
502
|
+
communityTotalInStrength: new Float64Array(n),
|
|
503
|
+
candidateCommunities: new Int32Array(n),
|
|
504
|
+
candidateCommunityCount: 0,
|
|
505
|
+
neighborEdgeWeightToCommunity: new Float64Array(n),
|
|
506
|
+
outEdgeWeightToCommunity: new Float64Array(n),
|
|
507
|
+
inEdgeWeightFromCommunity: new Float64Array(n),
|
|
508
|
+
isCandidateCommunity: new Uint8Array(n),
|
|
509
|
+
};
|
|
454
510
|
|
|
455
511
|
return {
|
|
456
512
|
n,
|
|
457
513
|
get communityCount() {
|
|
458
|
-
return communityCount;
|
|
514
|
+
return s.communityCount;
|
|
459
515
|
},
|
|
460
516
|
nodeCommunity,
|
|
461
517
|
get communityTotalSize() {
|
|
462
|
-
return communityTotalSize;
|
|
518
|
+
return s.communityTotalSize;
|
|
463
519
|
},
|
|
464
520
|
get communityNodeCount() {
|
|
465
|
-
return communityNodeCount;
|
|
521
|
+
return s.communityNodeCount;
|
|
466
522
|
},
|
|
467
523
|
get communityInternalEdgeWeight() {
|
|
468
|
-
return communityInternalEdgeWeight;
|
|
524
|
+
return s.communityInternalEdgeWeight;
|
|
469
525
|
},
|
|
470
526
|
get communityTotalStrength() {
|
|
471
|
-
return communityTotalStrength;
|
|
527
|
+
return s.communityTotalStrength;
|
|
472
528
|
},
|
|
473
529
|
get communityTotalOutStrength() {
|
|
474
|
-
return communityTotalOutStrength;
|
|
530
|
+
return s.communityTotalOutStrength;
|
|
475
531
|
},
|
|
476
532
|
get communityTotalInStrength() {
|
|
477
|
-
return communityTotalInStrength;
|
|
533
|
+
return s.communityTotalInStrength;
|
|
478
534
|
},
|
|
479
535
|
resizeCommunities(newCount: number): void {
|
|
480
|
-
ensureCommCapacity(newCount);
|
|
481
|
-
communityCount = newCount;
|
|
536
|
+
ensureCommCapacity(s, newCount);
|
|
537
|
+
s.communityCount = newCount;
|
|
482
538
|
},
|
|
483
|
-
initializeAggregates,
|
|
484
|
-
accumulateNeighborCommunityEdgeWeights,
|
|
485
|
-
getCandidateCommunityCount: (): number => candidateCommunityCount,
|
|
486
|
-
getCandidateCommunityAt: (i: number): number => iget(candidateCommunities, i),
|
|
539
|
+
initializeAggregates: () => initAggregates(s),
|
|
540
|
+
accumulateNeighborCommunityEdgeWeights: (v: number) => accumulateNeighborWeights(s, v),
|
|
541
|
+
getCandidateCommunityCount: (): number => s.candidateCommunityCount,
|
|
542
|
+
getCandidateCommunityAt: (i: number): number => iget(s.candidateCommunities, i),
|
|
487
543
|
getNeighborEdgeWeightToCommunity: (c: number): number =>
|
|
488
|
-
fget(neighborEdgeWeightToCommunity, c) || 0,
|
|
489
|
-
getOutEdgeWeightToCommunity: (c: number): number => fget(outEdgeWeightToCommunity, c) || 0,
|
|
490
|
-
getInEdgeWeightFromCommunity: (c: number): number => fget(inEdgeWeightFromCommunity, c) || 0,
|
|
491
|
-
deltaModularityUndirected,
|
|
492
|
-
|
|
493
|
-
|
|
494
|
-
|
|
495
|
-
|
|
496
|
-
|
|
497
|
-
|
|
498
|
-
|
|
544
|
+
fget(s.neighborEdgeWeightToCommunity, c) || 0,
|
|
545
|
+
getOutEdgeWeightToCommunity: (c: number): number => fget(s.outEdgeWeightToCommunity, c) || 0,
|
|
546
|
+
getInEdgeWeightFromCommunity: (c: number): number => fget(s.inEdgeWeightFromCommunity, c) || 0,
|
|
547
|
+
deltaModularityUndirected: (v: number, newC: number, gamma?: number) =>
|
|
548
|
+
computeDeltaModularityUndirected(s, v, newC, gamma),
|
|
549
|
+
deltaModularityDirected: (v: number, newC: number, gamma?: number) =>
|
|
550
|
+
computeDeltaModularityDirected(s, v, newC, gamma),
|
|
551
|
+
deltaCPM: (v: number, newC: number, gamma?: number) => computeDeltaCPM(s, v, newC, gamma),
|
|
552
|
+
moveNodeToCommunity: (v: number, newC: number) => moveNode(s, v, newC),
|
|
553
|
+
compactCommunityIds: (opts?: CompactOptions) => compactIds(s, opts),
|
|
554
|
+
getCommunityMembers(): number[][] {
|
|
555
|
+
const comms: number[][] = new Array(s.communityCount);
|
|
556
|
+
for (let i = 0; i < s.communityCount; i++) comms[i] = [];
|
|
557
|
+
for (let i = 0; i < n; i++) comms[iget(nodeCommunity, i)]!.push(i);
|
|
558
|
+
return comms;
|
|
559
|
+
},
|
|
560
|
+
getCommunityTotalSize: (c: number): number =>
|
|
561
|
+
c < s.communityTotalSize.length ? fget(s.communityTotalSize, c) : 0,
|
|
562
|
+
getCommunityNodeCount: (c: number): number =>
|
|
563
|
+
c < s.communityNodeCount.length ? iget(s.communityNodeCount, c) : 0,
|
|
499
564
|
graph: undefined,
|
|
500
565
|
};
|
|
501
566
|
}
|