@nfdi4plants/arctrl 3.2.2 → 3.3.0

package/dist/ts/ts/Core/Comment.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Comment.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/Comment.ts"],"names":[],"mappings":"AACA,OAAO,EAAgC,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACrG,OAAO,EAAE,WAAW,EAAE,UAAU,EAAU,MAAM,qCAAqC,CAAC;AAEtF,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAI7D,OAAO,EAAE,MAAM,EAAY,MAAM,sCAAsC,CAAC;AAGxE,OAAO,EAAoD,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEvH,qBAAa,QAAQ;IACjB,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACX,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM;IAIzC,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAG7B;IACD,IAAI,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAG5B;IACD,IAAI,KAAK,IAAI,MAAM,GAAG,SAAS,CAG9B;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,EAG9B;IACD,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,QAAQ;IAGlE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,QAAQ;IAGtD,MAAM,CAAC,QAAQ,CAAC,OAAO,EAAE,QAAQ,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC;IAGpD,IAAI,IAAI,QAAQ;IAMhB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAKzB,WAAW,IAAI,KAAK;IAIpB,QAAQ,IAAI,MAAM;IAgBlB,MAAM,CAAC,UAAU,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;CAKzC;AAED,wBAAgB,oBAAoB,IAAI,QAAQ,CAE/C;AAED,wBAAgB,sBAAsB,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,QAAQ,CAE9E;AAED,qBAAa,MAAO,SAAQ,MAAO,YAAW,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC;IACjF,QAAQ,CAAC,IAAI,EAAE,KAAK,CAAC;IACrB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;gBACX,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM;IAKtC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM;IAG/C,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM;IAGjD,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC;IAG/C,IAAI,IAAI,MAAM;CAIjB;AAED,wBAAgB,kBAAkB,IAAI,QAAQ,CAE7C"}
+{"version":3,"file":"Comment.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/Comment.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACnF,OAAO,EAAE,WAAW,EAAE,UAAU,EAAU,MAAM,qCAAqC,CAAC;AAEtF,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAI7D,OAAO,EAAE,MAAM,EAAY,MAAM,sCAAsC,CAAC;AAGxE,OAAO,EAAoD,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEvH,qBAAa,QAAQ;IACjB,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACX,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM;IAIzC,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAG7B;IACD,IAAI,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAG5B;IACD,IAAI,KAAK,IAAI,MAAM,GAAG,SAAS,CAG9B;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,EAG9B;IACD,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,QAAQ;IAGlE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,QAAQ;IAGtD,MAAM,CAAC,QAAQ,CAAC,OAAO,EAAE,QAAQ,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC;IAGpD,IAAI,IAAI,QAAQ;IAMhB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAKzB,WAAW,IAAI,KAAK;IAIpB,QAAQ,IAAI,MAAM;IAgBlB,MAAM,CAAC,UAAU,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;CAKzC;AAED,wBAAgB,oBAAoB,IAAI,QAAQ,CAE/C;AAED,wBAAgB,sBAAsB,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,QAAQ,CAE9E;AAED,qBAAa,MAAO,SAAQ,MAAO,YAAW,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC;IACjF,QAAQ,CAAC,IAAI,EAAE,KAAK,CAAC;IACrB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;gBACX,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM;IAKtC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM;IAG/C,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM;IAGjD,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC;IAG/C,IAAI,IAAI,MAAM;CAIjB;AAED,wBAAgB,kBAAkB,IAAI,QAAQ,CAE7C"}

package/dist/ts/ts/Core/Comment.js

@@ -1,4 +1,4 @@
-import { unwrap, defaultArg, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { equals } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { boxHashArray, boxHashOption } from './Helper/HashCodes.js';
 import { StringBuilder_$ctor, StringBuilder__Append_Z721C83C5 } from '../../node_modules/@fable-org/fable-library-ts/System.Text.js';
@@ -61,7 +61,7 @@ class Comment$ {
     StringBuilder__Append_Z721C83C5(sb, join(", ", map((tupledArg_1) => toText(printf('%s = "%s"'))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => {
       const option_1 = tupledArg[1];
       if (option_1 != null) {
-        return [tupledArg[0], value(option_1)];
+        return [tupledArg[0], option_1];
       } else {
         return void 0;
       }

package/dist/ts/ts/Core/CommentList.js

@@ -9,9 +9,9 @@ function tryItem(key, comments) {
     const matchValue = c.Name;
     let matchResult = void 0, n_1 = void 0;
     if (matchValue != null) {
-      if (value(matchValue) === key) {
+      if (matchValue === key) {
         matchResult = 0;
-        n_1 = value(matchValue);
+        n_1 = matchValue;
       } else {
         matchResult = 1;
       }
@@ -31,9 +31,9 @@ function containsKey(key, comments) {
     const matchValue = c.Name;
     let matchResult = void 0, n_1 = void 0;
     if (matchValue != null) {
-      if (value(matchValue) === key) {
+      if (matchValue === key) {
         matchResult = 0;
-        n_1 = value(matchValue);
+        n_1 = matchValue;
       } else {
         matchResult = 1;
       }
@@ -55,7 +55,7 @@ function toMap(comments) {
   return ofSeq(ResizeArray_choose((c) => {
     const matchValue = c.Name;
     if (matchValue != null) {
-      return [value(matchValue), c.Value];
+      return [matchValue, c.Value];
     } else {
       return void 0;
     }
@@ -81,9 +81,9 @@ function dropByKey(key, comments) {
     const matchValue = c.Name;
     let matchResult = void 0, n_1 = void 0;
     if (matchValue != null) {
-      if (value(matchValue) === key) {
+      if (matchValue === key) {
         matchResult = 0;
-        n_1 = value(matchValue);
+        n_1 = matchValue;
       } else {
         matchResult = 1;
       }

package/dist/ts/ts/Core/Conversion.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Conversion.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/Conversion.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AACrC,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AAExC,OAAO,EAAmC,MAAM,EAAc,MAAM,uCAAuC,CAAC;AAE5G,OAAO,EAAW,KAAK,EAAE,MAAM,sCAAsC,CAAC;AACtE,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAuD,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AAG3G,OAAO,EAAqF,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AACnJ,OAAO,EAAE,SAAS,EAA4B,MAAM,wBAAwB,CAAC;AAC7E,OAAO,EAAiO,sBAAsB,EAAE,MAAM,4BAA4B,CAAC;AACnS,OAAO,EAAE,iBAAiB,EAAE,MAAM,gCAAgC,CAAC;AACnE,OAAO,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,WAAW,EAA+B,MAAM,0BAA0B,CAAC;AACpF,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAE7C,OAAO,EAAE,sBAAsB,EAA0C,MAAM,qCAAqC,CAAC;AACrH,OAAO,EAAE,iBAAiB,EAAoC,MAAM,gCAAgC,CAAC;AACrG,OAAO,EAAoO,mBAAmB,EAAwJ,MAAM,2BAA2B,CAAC;AACxb,OAAO,EAAoM,oBAAoB,EAAsH,MAAM,4BAA4B,CAAC;AAQxX,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAoM,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACnQ,OAAO,EAA6D,OAAO,EAAqC,MAAM,sBAAsB,CAAC;AAC7I,OAAO,EAAqM,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAKpP,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AAEjD,eAAO,MAAM,eAAe,UAAU,CAAC;AAEvC,eAAO,MAAM,4BAA4B,6BAA6B,CAAC;AAEvE,eAAO,MAAM,+BAA+B,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAGnE,CAAC;AAEL,wBAAgB,4BAA4B,CAAC,MAAM,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,MAAM,CAK5F;AAED;;GAEG;AACH,wBAAgB,4CAA4C,CAAC,MAAM,EAAE,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC,CAU7F;AAED,wBAAgB,gCAAgC,CAAC,MAAM,EAAE,MAAM,GAAG,QAAQ,EAAE,CAS3E;AAED,wBAAgB,2BAA2B,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAqBlE;AAED,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAWjE;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,oBAAoB,GAAG,CAAC,MAAM,CAAC,kBAAkB,CAAC,EAAE,MAAM,CAAC,kBAAkB,CAAC,CAAC,CA8B3H;AAED;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,SAAS,CAGjH;AAED;;GAEG;AACH,wBAAgB,+BAA+B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,qBAAqB,CAIlI;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,WAAW,CAGrH;AAED;;GAEG;AACH,wBAAgB,oCAAoC,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,sBAAsB,CAGxI;AAED,wBAAgB,qCAAqC,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAE5F;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,mBAAmB,CAoB9H;AAED;;GAEG;AACH,wBAAgB,8BAA8B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,oBAAoB,CAoChI;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,MAAM,CAAC,kBAAkB,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,kBAAkB,CAAC,GAAG,oBAAoB,CAyF/H;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAEzG;AAED;;GAEG;AACH,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,qBAAqB,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAE5H;AAED;;GAEG;AACH,wBAAgB,8BAA8B,CAAC,EAAE,EAAE,WAAW,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAE9G;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,EAAE,EAAE,sBAAsB,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAEjI;AAED;;GAEG;AACH,wBAAgB,+BAA+B,CAAC,EAAE,EAAE,mBAAmB,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAqBvH;AAED;;GAEG;AACH,wBAAgB,gCAAgC,CAAC,EAAE,EAAE,oBAAoB,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAmBzH;AAED;;;;;;GAMG;AACH,wBAAgB,mCAAmC,CAAC,EAAE,EAAE,kBAAkB,GAAG,MAAM,CAQlF;AAED;;;;;;GAMG;AACH,wBAAgB,qCAAqC,CAAC,IAAI,EAAE,MAAM,GAAG,kBAAkB,CAatF;AAED;;GAEG;AACH,wBAAgB,iCAAiC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,CAcjL;AAED;;GAEG;AACH,wBAAgB,iCAAiC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,qBAAqB,CAAC,CAAC,CAAC,CAW7L;AAED;;GAEG;AACH,wBAAgB,8BAA8B,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,WAAW,CAAC,CAAC,CAAC,CAWhL;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,sBAAsB,CAAC,CAAC,CAAC,CAWnM;AAED;;GAEG;AACH,wBAAgB,uCAAuC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,kBAAkB,CAAC,CAAC,CAAC,CAgB5K;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,MAAM,CAAC,CAAC,CAAC,CAgB/J;AAED;;GAEG;AACH,wBAAgB,8CAA8C,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,MAAM,CAAC,CAAC,CAAC,CAgBvK;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,MAAM,CAAC,CAAC,CAAC,CAgB/J;AAED;;GAEG;AACH,wBAAgB,0CAA0C,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,MAAM,CAAC,CAAC,CAAC,CAgBnK;AAED;;GAEG;AACH,wBAAgB,gCAAgC,CAAC,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,sBAAsB,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,KAAK,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,mBAAmB,CAAC,CAAC,CAAC,CAWtK;AAED;;GAEG;AACH,wBAAgB,iCAAiC,C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package/dist/ts/ts/Core/Conversion.js

@@ -24,7 +24,7 @@ import { ActivePatterns_$007CRegex$007C_$007C } from './Helper/Regex.js';
 import { ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, tryGetParameterColumnIndex, tryGetComponentIndex, tryGetCharacteristicColumnIndex, tryGetFactorColumnIndex, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex, ARCtrl_Process_Component__Component_TryGetColumnIndex } from './Process/ColumnIndex.js';
 import { Unchecked_tryGetCellAt, getEmptyCellForHeader, Unchecked_alignByHeaders } from './Table/ArcTableAux.js';
 import { ArcTable } from './Table/ArcTable.js';
-import { choose as choose$1, singleton, ofArray, isEmpty, length, empty, map as map$1, item, mapIndexed, collect, tryPick as tryPick$1, head, sortBy, append as append$1, zip, initialize } from '../../node_modules/@fable-org/fable-library-ts/List.js';
+import { choose as choose$1, singleton, ofArray, isEmpty, length, empty, map as map$1, item, mapIndexed, collect, tryPick as tryPick$1, FSharpList__get_Head, sortBy, append as append$1, zip, initialize } from '../../node_modules/@fable-org/fable-library-ts/List.js';
 import { Process_composeName, Process_make, Process_decomposeName_Z721C83C5, Process_create_Z7C1F7FA9 } from './Process/Process.js';
 import { Protocol_make, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType, Protocol_create_Z414665E7 } from './Process/Protocol.js';
 import { List_groupBy, List_distinct } from '../../node_modules/@fable-org/fable-library-ts/Seq2.js';
@@ -48,7 +48,7 @@ function Person_setSourceAssayComment(person, assayIdentifier) {
 function Person_getSourceAssayIdentifiersFromComments(person) {
   return choose((c) => {
     let option_1 = void 0, n = void 0;
-    if (defaultArg((option_1 = c.Name, option_1 != null ? (n = value(option_1), n.startsWith(Person_AssayIdentifierPrefix)) : void 0), false)) {
+    if (defaultArg((option_1 = c.Name, option_1 != null ? (n = option_1, n.startsWith(Person_AssayIdentifierPrefix)) : void 0), false)) {
       return c.Value;
     } else {
       return void 0;
@@ -89,7 +89,7 @@ function Person_setCommentFromORCID(person) {
   const matchValue = person_1.ORCID;
   if (matchValue == null) {
   } else {
-    const orcid = value(matchValue);
+    const orcid = matchValue;
     const comment = Comment$.create(Person_orcidKey, orcid);
     void person_1.Comments.push(comment);
   }
@@ -212,26 +212,27 @@ function JsonTypes_composeProcessOutput(header, value) {
       return toFail(printf("Could not parse output header %O"))(header);
   }
 }
-function JsonTypes_cellOfValue(value$1, unit) {
-  const value_2 = defaultArg(value$1, ScalarValue_Name(""));
-  let matchResult = void 0, oa = void 0, text = void 0, name = void 0, u = void 0, f = void 0, u_1 = void 0, f_1 = void 0, i = void 0, u_2 = void 0, i_1 = void 0;
+function JsonTypes_cellOfValue(value, unit) {
+  let u = void 0;
+  const value_2 = defaultArg(value, ScalarValue_Name(""));
+  let matchResult = void 0, oa_1 = void 0, oa_2 = void 0, u_1 = void 0, text = void 0, name = void 0, u_2 = void 0, f = void 0, u_3 = void 0, f_1 = void 0, i = void 0, u_4 = void 0, i_1 = void 0;
   switch (value_2.tag) {
     case /* Name */
     3: {
       if (value_2.fields[0] === "") {
         if (unit != null) {
-          matchResult = 3;
+          matchResult = 4;
           name = value_2.fields[0];
-          u = value(unit);
+          u_2 = unit;
         } else {
-          matchResult = 1;
+          matchResult = 2;
         }
       } else if (unit != null) {
-        matchResult = 3;
+        matchResult = 4;
         name = value_2.fields[0];
-        u = value(unit);
+        u_2 = unit;
       } else {
-        matchResult = 2;
+        matchResult = 3;
         text = value_2.fields[0];
       }
       break;
@@ -239,51 +240,59 @@ function JsonTypes_cellOfValue(value$1, unit) {
     case /* Float */
     2: {
       if (unit == null) {
-        matchResult = 5;
+        matchResult = 6;
         f_1 = value_2.fields[0];
       } else {
-        matchResult = 4;
+        matchResult = 5;
         f = value_2.fields[0];
-        u_1 = value(unit);
+        u_3 = unit;
       }
       break;
     }
     case /* Int */
     1: {
       if (unit == null) {
-        matchResult = 7;
+        matchResult = 8;
         i_1 = value_2.fields[0];
       } else {
-        matchResult = 6;
+        matchResult = 7;
         i = value_2.fields[0];
-        u_2 = value(unit);
+        u_4 = unit;
       }
       break;
     }
     default:
-      if (unit == null) {
-        matchResult = 0;
-        oa = value_2.fields[0];
+      if (unit != null) {
+        if (u = unit, value_2.fields[0], u.isEmpty()) {
+          matchResult = 1;
+          oa_2 = value_2.fields[0];
+          u_1 = unit;
+        } else {
+          matchResult = 9;
+        }
       } else {
-        matchResult = 8;
+        matchResult = 0;
+        oa_1 = value_2.fields[0];
       }
   }
   switch (matchResult) {
     case 0:
-      return CompositeCell_Term(oa);
+      return CompositeCell_Term(oa_1);
     case 1:
-      return CompositeCell_Term(new OntologyAnnotation());
+      return CompositeCell_Term(oa_2);
     case 2:
-      return CompositeCell_Term(new OntologyAnnotation(text));
+      return CompositeCell_Term(new OntologyAnnotation());
     case 3:
-      return CompositeCell_Unitized(name, u);
+      return CompositeCell_Term(new OntologyAnnotation(text));
     case 4:
-      return CompositeCell_Unitized(f.toString(), u_1);
+      return CompositeCell_Unitized(name, u_2);
     case 5:
-      return CompositeCell_Unitized(f_1.toString(), new OntologyAnnotation());
+      return CompositeCell_Unitized(f.toString(), u_3);
     case 6:
-      return CompositeCell_Unitized(int32ToString(i), u_2);
+      return CompositeCell_Unitized(f_1.toString(), new OntologyAnnotation());
     case 7:
+      return CompositeCell_Unitized(int32ToString(i), u_4);
+    case 8:
       return CompositeCell_Unitized(int32ToString(i_1), new OntologyAnnotation());
     default:
       return toFail(printf("Could not parse value %O with unit %O"))(value_2)(unit);
@@ -363,7 +372,7 @@ function JsonTypes_composeTechnologyPlatform(tp) {
 function JsonTypes_decomposeTechnologyPlatform(name) {
   const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^(?<value>.+) \\((?<ontology>[^(]*:[^)]*)\\)$", name);
   if (activePatternResult != null) {
-    const r = value(activePatternResult);
+    const r = activePatternResult;
     let oa;
     const tan = r.groups && r.groups.ontology || "";
     oa = OntologyAnnotation.fromTermAnnotation(tan);
@@ -382,7 +391,7 @@ function ProcessParsing_tryComponentGetter(generalI, valueI, valueHeader) {
     const cat = CompositeHeader_Component(newOA);
     return (table) => (i) => {
       let matchValue = void 0;
-      return JsonTypes_composeComponent(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
+      return JsonTypes_composeComponent(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -394,7 +403,7 @@ function ProcessParsing_tryParameterGetter(generalI, valueI, valueHeader) {
     const cat = CompositeHeader_Parameter(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
       let matchValue = void 0;
-      return JsonTypes_composeParameterValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
+      return JsonTypes_composeParameterValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -406,7 +415,7 @@ function ProcessParsing_tryFactorGetter(generalI, valueI, valueHeader) {
     const cat = CompositeHeader_Factor(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
       let matchValue = void 0;
-      return JsonTypes_composeFactorValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
+      return JsonTypes_composeFactorValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -418,7 +427,7 @@ function ProcessParsing_tryCharacteristicGetter(generalI, valueI, valueHeader) {
     const cat = CompositeHeader_Characteristic(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
       let matchValue = void 0;
-      return JsonTypes_composeCharacteristicValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
+      return JsonTypes_composeCharacteristicValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -432,7 +441,7 @@ function ProcessParsing_tryGetProtocolTypeGetter(generalI, header) {
       if (matchValue == null) {
         return new OntologyAnnotation();
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return cell.AsTerm;
       }
     };
@@ -448,7 +457,7 @@ function ProcessParsing_tryGetProtocolREFGetter(generalI, header) {
       if (matchValue == null) {
         return "";
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return cell.AsFreeText;
       }
     };
@@ -464,7 +473,7 @@ function ProcessParsing_tryGetProtocolDescriptionGetter(generalI, header) {
       if (matchValue == null) {
         return "";
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return cell.AsFreeText;
       }
     };
@@ -480,7 +489,7 @@ function ProcessParsing_tryGetProtocolURIGetter(generalI, header) {
       if (matchValue == null) {
         return "";
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return cell.AsFreeText;
       }
     };
@@ -496,7 +505,7 @@ function ProcessParsing_tryGetProtocolVersionGetter(generalI, header) {
       if (matchValue == null) {
         return "";
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return cell.AsFreeText;
       }
     };
@@ -510,7 +519,7 @@ function ProcessParsing_tryGetInputGetter(generalI, header) {
     header.fields[0];
     return (table) => (i) => {
       let matchValue = void 0;
-      return JsonTypes_composeProcessInput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
+      return JsonTypes_composeProcessInput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -522,7 +531,7 @@ function ProcessParsing_tryGetOutputGetter(generalI, header) {
     header.fields[0];
     return (table) => (i) => {
       let matchValue = void 0;
-      return JsonTypes_composeProcessOutput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
+      return JsonTypes_composeProcessOutput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : matchValue));
     };
   } else {
     return void 0;
@@ -537,7 +546,7 @@ function ProcessParsing_tryGetCommentGetter(generalI, header) {
       if (matchValue == null) {
         return new Comment$(c);
       } else {
-        const cell = value(matchValue);
+        const cell = matchValue;
         return new Comment$(c, cell.AsFreeText);
       }
     };
@@ -598,11 +607,11 @@ function ProcessParsing_getProcessGetter(processNameRoot, headers) {
     let option_5 = void 0, option_7 = void 0, option_9 = void 0, option_11 = void 0, option_13 = void 0;
     let pn;
     const option_1 = Option_fromValueWithDefault("", processNameRoot);
-    pn = option_1 != null ? Process_composeName(value(option_1), i_4) : void 0;
+    pn = option_1 != null ? Process_composeName(option_1, i_4) : void 0;
     const paramvalues = Option_fromValueWithDefault(empty(), map$1((f_4) => f_4(table_4)(i_4), parameterValueGetters));
     let parameters;
     const option_3 = paramvalues;
-    parameters = option_3 != null ? map$1((pv) => value(pv.Category), value(option_3)) : void 0;
+    parameters = option_3 != null ? map$1((pv) => value(pv.Category), option_3) : void 0;
     const comments = Option_fromValueWithDefault(empty(), map$1((f_5) => f_5(table_4)(i_4), commentGetters));
     let protocol;
     const p_1 = Protocol_make(void 0, (option_5 = protocolREFGetter, option_5 != null ? value(option_5)(table_4)(i_4) : void 0), (option_7 = protocolTypeGetter, option_7 != null ? value(option_7)(table_4)(i_4) : void 0), (option_9 = protocolDescriptionGetter, option_9 != null ? value(option_9)(table_4)(i_4) : void 0), (option_11 = protocolURIGetter, option_11 != null ? value(option_11)(table_4)(i_4) : void 0), (option_13 = protocolVersionGetter, option_13 != null ? value(option_13)(table_4)(i_4) : void 0), parameters, Option_fromValueWithDefault(empty(), map$1((f_11) => f_11(table_4)(i_4), componentGetters)), void 0);
@@ -669,11 +678,11 @@ function ProcessParsing_mergeIdenticalProcesses(processes) {
   const l = List_groupBy((x) => {
     let option_1 = void 0, option_3 = void 0, option_5 = void 0, option_7 = void 0, option_9 = void 0, option_11 = void 0;
     if (x.Name != null && Process_decomposeName_Z721C83C5(value(x.Name))[1] != null) {
-      return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), (option_1 = x.ParameterValues, option_1 != null ? some(boxHashSeq(value(option_1))) : void 0), (option_3 = x.Comments, option_3 != null ? some(boxHashSeq(value(option_3))) : void 0)];
+      return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), (option_1 = x.ParameterValues, option_1 != null ? some(boxHashSeq(option_1)) : void 0), (option_3 = x.Comments, option_3 != null ? some(boxHashSeq(option_3)) : void 0)];
     } else if (x.ExecutesProtocol != null && value(x.ExecutesProtocol).Name != null) {
-      return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), (option_5 = x.ParameterValues, option_5 != null ? some(boxHashSeq(value(option_5))) : void 0), (option_7 = x.Comments, option_7 != null ? some(boxHashSeq(value(option_7))) : void 0)];
+      return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), (option_5 = x.ParameterValues, option_5 != null ? some(boxHashSeq(option_5)) : void 0), (option_7 = x.Comments, option_7 != null ? some(boxHashSeq(option_7)) : void 0)];
     } else {
-      return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), (option_9 = x.ParameterValues, option_9 != null ? some(boxHashSeq(value(option_9))) : void 0), (option_11 = x.Comments, option_11 != null ? some(boxHashSeq(value(option_11))) : void 0)];
+      return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), (option_9 = x.ParameterValues, option_9 != null ? some(boxHashSeq(option_9)) : void 0), (option_11 = x.Comments, option_11 != null ? some(boxHashSeq(option_11)) : void 0)];
     }
   }, processes, {
     Equals: equalArrays,
@@ -693,13 +702,13 @@ function ProcessParsing_processToRows(p) {
   const pvs = map$1((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
   let components;
   const matchValue = p.ExecutesProtocol;
-  components = matchValue == null ? empty() : map$1((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(value(matchValue).Components, empty()));
+  components = matchValue == null ? empty() : map$1((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(matchValue.Components, empty()));
   let protVals;
   const matchValue_1 = p.ExecutesProtocol;
   if (matchValue_1 == null) {
     protVals = empty();
   } else {
-    const prot_1 = value(matchValue_1);
+    const prot_1 = matchValue_1;
     protVals = toList(delay(() => append(prot_1.Name != null ? singleton$1([CompositeHeader.ProtocolREF, CompositeCell_FreeText(value(prot_1.Name))]) : empty$1(), delay(() => append(prot_1.ProtocolType != null ? singleton$1([CompositeHeader.ProtocolType, CompositeCell_Term(value(prot_1.ProtocolType))]) : empty$1(), delay(() => append(prot_1.Description != null ? singleton$1([CompositeHeader.ProtocolDescription, CompositeCell_FreeText(value(prot_1.Description))]) : empty$1(), delay(() => append(prot_1.Uri != null ? singleton$1([CompositeHeader.ProtocolUri, CompositeCell_FreeText(value(prot_1.Uri))]) : empty$1(), delay(() => prot_1.Version != null ? singleton$1([CompositeHeader.ProtocolVersion, CompositeCell_FreeText(value(prot_1.Version))]) : empty$1()))))))))));
   }
   const comments = map$1((c) => [CompositeHeader_Comment$(defaultArg(c.Name, "")), CompositeCell_FreeText(defaultArg(c.Value, ""))], defaultArg(p.Comments, empty()));
@@ -712,7 +721,7 @@ function ProcessParsing_processToRows(p) {
       } else {
         return void 0;
       }
-    }, ios), head(ios)[0]);
+    }, ios), FSharpList__get_Head(ios)[0]);
     const inputForType = defaultArg(tryPick$1((tupledArg_3) => {
       const i_3 = tupledArg_3[0];
       if (ProcessInput__isData(i_3) ? true : ProcessInput__isMaterial(i_3)) {
@@ -720,7 +729,7 @@ function ProcessParsing_processToRows(p) {
       } else {
         return void 0;
       }
-    }, ios), head(ios)[0]);
+    }, ios), FSharpList__get_Head(ios)[0]);
     const chars = map$1((cv) => [JsonTypes_decomposeCharacteristicValue(cv), tryGetCharacteristicColumnIndex(cv)], ProcessInput_getCharacteristicValues_5B3D5BA9(inputForCharas));
     const outputForFactors = defaultArg(tryPick$1((tupledArg_4) => {
       const o_4 = tupledArg_4[1];
@@ -729,7 +738,7 @@ function ProcessParsing_processToRows(p) {
       } else {
         return void 0;
       }
-    }, ios), head(ios)[1]);
+    }, ios), FSharpList__get_Head(ios)[1]);
     const outputForType = defaultArg(tryPick$1((tupledArg_5) => {
       const o_5 = tupledArg_5[1];
       if (ProcessOutput__isData(o_5) ? true : ProcessOutput__isMaterial(o_5)) {
@@ -737,7 +746,7 @@ function ProcessParsing_processToRows(p) {
       } else {
         return void 0;
       }
-    }, ios), head(ios)[1]);
+    }, ios), FSharpList__get_Head(ios)[1]);
     const vals = map$1((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 1e4) | 0, append$1(chars, append$1(components, append$1(pvs, map$1((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
       Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
     }));
@@ -915,17 +924,17 @@ function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
       const c = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
       let v_1;
       const option_4 = c.ComponentValue;
-      v_1 = option_4 != null ? ResizeArray_singleton(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z2468E39A(value(option_4), unwrap(c.ComponentUnit))) : void 0;
+      v_1 = option_4 != null ? ResizeArray_singleton(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z2468E39A(option_4, unwrap(c.ComponentUnit))) : void 0;
       t.AddColumn(CompositeHeader_Parameter(value(c.ComponentType)), unwrap(v_1), unwrap(ARCtrl_Process_Component__Component_TryGetColumnIndex(c)));
     }
   } finally {
     disposeSafe(enumerator_1);
   }
-  option_6 = p.Description, option_6 != null ? some((d = value(option_6), t.AddProtocolDescriptionColumn(ResizeArray_singleton(d)))) : void 0;
-  option_8 = p.Version, option_8 != null ? some((d_1 = value(option_8), t.AddProtocolVersionColumn(ResizeArray_singleton(d_1)))) : void 0;
-  option_10 = p.ProtocolType, option_10 != null ? some((d_2 = value(option_10), t.AddProtocolTypeColumn(ResizeArray_singleton(d_2)))) : void 0;
-  option_12 = p.Uri, option_12 != null ? some((d_3 = value(option_12), t.AddProtocolUriColumn(ResizeArray_singleton(d_3)))) : void 0;
-  option_14 = p.Name, option_14 != null ? some((d_4 = value(option_14), t.AddProtocolNameColumn(ResizeArray_singleton(d_4)))) : void 0;
+  option_6 = p.Description, option_6 != null ? some((d = option_6, t.AddProtocolDescriptionColumn(ResizeArray_singleton(d)))) : void 0;
+  option_8 = p.Version, option_8 != null ? some((d_1 = option_8, t.AddProtocolVersionColumn(ResizeArray_singleton(d_1)))) : void 0;
+  option_10 = p.ProtocolType, option_10 != null ? some((d_2 = option_10, t.AddProtocolTypeColumn(ResizeArray_singleton(d_2)))) : void 0;
+  option_12 = p.Uri, option_12 != null ? some((d_3 = option_12, t.AddProtocolUriColumn(ResizeArray_singleton(d_3)))) : void 0;
+  option_14 = p.Name, option_14 != null ? some((d_4 = option_14, t.AddProtocolNameColumn(ResizeArray_singleton(d_4)))) : void 0;
   return t;
 }
 function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {

package/dist/ts/ts/Core/Data.d.ts

@@ -35,9 +35,15 @@ export declare class Data implements IISAPrintable {
     static create(Id?: string, Name?: string, DataType?: DataFile_$union, Format?: string, SelectorFormat?: string, Comments?: Comment$[]): Data;
     static get empty(): Data;
     get NameText(): string;
+    /**
+     * Returns true if the data contains no information. A file path consisting only of whitespace counts as empty.
+     */
+    isEmpty(): boolean;
     GetAbsolutePathBy(f: ((arg0: string) => string), checkExistenceFromRoot?: ((arg0: string) => boolean)): string;
     GetAbsolutePathForAssay(assayIdentifier: string, checkExistenceFromRoot?: ((arg0: string) => boolean)): string;
     GetAbsolutePathForStudy(studyIdentifier: string, checkExistenceFromRoot?: ((arg0: string) => boolean)): string;
+    GetAbsolutePathForWorkflow(workflowIdentifier: string, checkExistenceFromRoot?: ((arg0: string) => boolean)): string;
+    GetAbsolutePathForRun(runIdentifier: string, checkExistenceFromRoot?: ((arg0: string) => boolean)): string;
     Copy(): Data;
     GetHashCode(): int32;
     Equals(obj: any): boolean;

package/dist/ts/ts/Core/Data.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Data.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/Data.ts"],"names":[],"mappings":"AAIA,OAAO,EAAwC,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACrG,OAAO,EAA0B,eAAe,EAAE,MAAM,eAAe,CAAC;AACxE,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AAGxC,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAE7D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,wBAAgB,+BAA+B,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEtF;AAED,wBAAgB,+BAA+B,CAAC,IAAI,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAStF;AAED,qBAAa,IAAK,YAAW,aAAa;IACtC,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC;IACnC,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACxB,eAAe,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAChC,SAAS,EAAE,QAAQ,EAAE,CAAC;gBACV,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE;IAiBnI,IAAI,EAAE,IAAI,MAAM,GAAG,SAAS,CAG3B;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,MAAM,CAAC,MAAM,CAAC,EAGxB;IACD,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAI7B;IACD,IAAI,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAW5B;IACD,IAAI,QAAQ,IAAI,MAAM,GAAG,SAAS,CAGjC;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAGpC;IACD,IAAI,QAAQ,IAAI,MAAM,GAAG,SAAS,CAGjC;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAGpC;IACD,IAAI,QAAQ,IAAI,eAAe,GAAG,SAAS,CAG1C;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,eAAe,CAAC,EAG7C;IACD,IAAI,MAAM,IAAI,MAAM,GAAG,SAAS,CAG/B;IACD,IAAI,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAGhC;IACD,IAAI,cAAc,IAAI,MAAM,GAAG,SAAS,CAGvC;IACD,IAAI,cAAc,CAAC,cAAc,EAAE,MAAM,CAAC,MAAM,CAAC,EAGhD;IACD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAGzB;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,QAAQ,EAAE,EAGhC;IACD,MAAM,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,eAAe,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,GAAG,IAAI;IAGpL,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI;IAG5I,MAAM,KAAK,KAAK,IAAI,IAAI,CAEvB;IACD,IAAI,QAAQ,IAAI,MAAM,CAGrB;IACD,iBAAiB,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAe9G,uBAAuB,CAAC,eAAe,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAK9G,uBAAuB,CAAC,eAAe,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAK9G,IAAI,IAAI,IAAI;IAKZ,WAAW,IAAI,KAAK;IAIpB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAIzB,KAAK,IAAI,MAAM;IAIf,YAAY,IAAI,MAAM;CAczB;AAED,wBAAgB,gBAAgB,IAAI,QAAQ,CAE3C;AAED,wBAAgB,mBAAmB,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,CAEjK"}
+{"version":3,"file":"Data.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/Data.ts"],"names":[],"mappings":"AAIA,OAAO,EAAwC,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACrG,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AAGxC,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAE7D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,wBAAgB,+BAA+B,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEtF;AAED,wBAAgB,+BAA+B,CAAC,IAAI,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAStF;AAED,qBAAa,IAAK,YAAW,aAAa;IACtC,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC;IACnC,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACxB,eAAe,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAChC,SAAS,EAAE,QAAQ,EAAE,CAAC;gBACV,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE;IAiBnI,IAAI,EAAE,IAAI,MAAM,GAAG,SAAS,CAG3B;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,MAAM,CAAC,MAAM,CAAC,EAGxB;IACD,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAI7B;IACD,IAAI,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAW5B;IACD,IAAI,QAAQ,IAAI,MAAM,GAAG,SAAS,CAGjC;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAGpC;IACD,IAAI,QAAQ,IAAI,MAAM,GAAG,SAAS,CAGjC;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAGpC;IACD,IAAI,QAAQ,IAAI,eAAe,GAAG,SAAS,CAG1C;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,eAAe,CAAC,EAG7C;IACD,IAAI,MAAM,IAAI,MAAM,GAAG,SAAS,CAG/B;IACD,IAAI,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAGhC;IACD,IAAI,cAAc,IAAI,MAAM,GAAG,SAAS,CAGvC;IACD,IAAI,cAAc,CAAC,cAAc,EAAE,MAAM,CAAC,MAAM,CAAC,EAGhD;IACD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAGzB;IACD,IAAI,QAAQ,CAAC,QAAQ,EAAE,QAAQ,EAAE,EAGhC;IACD,MAAM,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,eAAe,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,GAAG,IAAI;IAGpL,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI;IAG5I,MAAM,KAAK,KAAK,IAAI,IAAI,CAEvB;IACD,IAAI,QAAQ,IAAI,MAAM,CAGrB;IACD;;OAEG;IACH,OAAO,IAAI,OAAO;IAIlB,iBAAiB,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAoB9G,uBAAuB,CAAC,eAAe,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAK9G,uBAAuB,CAAC,eAAe,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAK9G,0BAA0B,CAAC,kBAAkB,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAKpH,qBAAqB,CAAC,aAAa,EAAE,MAAM,EAAE,sBAAsB,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GAAG,MAAM;IAK1G,IAAI,IAAI,IAAI;IAKZ,WAAW,IAAI,KAAK;IAIpB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAIzB,KAAK,IAAI,MAAM;IAIf,YAAY,IAAI,MAAM;CAczB;AAED,wBAAgB,gBAAgB,IAAI,QAAQ,CAE3C;AAED,wBAAgB,mBAAmB,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,eAAe,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,CAEjK"}

package/dist/ts/ts/Core/Data.js

@@ -1,8 +1,7 @@
-import { toText, printf, trim, trimStart, substring, concat } from '../../node_modules/@fable-org/fable-library-ts/String.js';
+import { toText, printf, trim, isNullOrWhiteSpace, trimStart, substring, concat } from '../../node_modules/@fable-org/fable-library-ts/String.js';
 import { Exception } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
-import { value, defaultArg, unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
-import { DataFile__get_AsString } from './DataFile.js';
+import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ResizeArray_map } from './Helper/Collections.js';
 import { boxHashArray, boxHashOption, boxHashSeq, hash } from './Helper/HashCodes.js';
 import { toString } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
@@ -27,7 +26,7 @@ class Data {
     if (name == null) {
       patternInput_1 = [void 0, void 0];
     } else {
-      const patternInput = DataAux_pathAndSelectorFromName(value(name));
+      const patternInput = DataAux_pathAndSelectorFromName(name);
       patternInput_1 = [patternInput[0], patternInput[1]];
     }
     this._selector = patternInput_1[1];
@@ -48,7 +47,7 @@ class Data {
   get Name() {
     let matchValue = void 0, matchValue_1 = void 0, p_1 = void 0, p = void 0, s = void 0;
     const this$ = this;
-    return unwrap((matchValue = this$._filePath, matchValue_1 = this$._selector, matchValue == null ? void 0 : matchValue_1 == null ? (p_1 = value(matchValue), p_1) : (p = value(matchValue), s = value(matchValue_1), DataAux_nameFromPathAndSelector(p, s))));
+    return unwrap((matchValue = this$._filePath, matchValue_1 = this$._selector, matchValue == null ? void 0 : matchValue_1 == null ? (p_1 = matchValue, p_1) : (p = matchValue, s = matchValue_1, DataAux_nameFromPathAndSelector(p, s))));
   }
   set Name(name) {
     const this$ = this;
@@ -56,7 +55,7 @@ class Data {
       this$._filePath = void 0;
       this$._selector = void 0;
     } else {
-      const patternInput = DataAux_pathAndSelectorFromName(value(name));
+      const patternInput = DataAux_pathAndSelectorFromName(name);
       this$._filePath = patternInput[0];
       this$._selector = patternInput[1];
     }
@@ -122,6 +121,13 @@ class Data {
     const this$ = this;
     return defaultArg(this$.Name, "");
   }
+  /**
+   * Returns true if the data contains no information. A file path consisting only of whitespace counts as empty.
+   */
+  isEmpty() {
+    const this$ = this;
+    return this$.ID == null && (this$.FilePath == null ? true : isNullOrWhiteSpace(value(this$.FilePath))) && this$.Selector == null && this$.DataType == null && this$.Format == null && this$.SelectorFormat == null && this$.Comments.length === 0;
+  }
   GetAbsolutePathBy(f, checkExistenceFromRoot) {
     let p = void 0, p_1 = void 0;
     const this$ = this;
@@ -129,11 +135,15 @@ class Data {
     const matchValue = this$.FilePath;
     if (matchValue == null) {
       throw new Exception("Data does not have a file path");
+    } else if (isNullOrWhiteSpace(matchValue)) {
+      const p_3 = matchValue;
+      return p_3;
     } else {
-      let p_3;
-      const s = trimStart(value(matchValue), "/");
-      p_3 = s.startsWith("./") ? substring(s, "./".length) : s;
-      return ((checkExistenceFromRoot_1(p_3) ? true : (p = p_3, ((p.startsWith("assays/") ? true : p.startsWith("studies/")) ? true : p.startsWith("workflows/")) ? true : p.startsWith("runs/"))) ? true : (p_1 = p_3, p_1.startsWith("http:") ? true : p_1.startsWith("https:"))) ? p_3 : f(p_3);
+      const p_4 = matchValue;
+      let p_5;
+      const s = trimStart(p_4, "/");
+      p_5 = s.startsWith("./") ? substring(s, "./".length) : s;
+      return ((checkExistenceFromRoot_1(p_5) ? true : (p = p_5, ((p.startsWith("assays/") ? true : p.startsWith("studies/")) ? true : p.startsWith("workflows/")) ? true : p.startsWith("runs/"))) ? true : (p_1 = p_5, p_1.startsWith("http:") ? true : p_1.startsWith("https:"))) ? p_5 : f(p_5);
     }
   }
   GetAbsolutePathForAssay(assayIdentifier, checkExistenceFromRoot) {
@@ -146,6 +156,16 @@ class Data {
     const folderPath = concat("studies/", studyIdentifier, "/resources/");
     return this$.GetAbsolutePathBy((p) => folderPath + trimStart(p, "/"), unwrap(checkExistenceFromRoot));
   }
+  GetAbsolutePathForWorkflow(workflowIdentifier, checkExistenceFromRoot) {
+    const this$ = this;
+    const folderPath = concat("workflows/", workflowIdentifier, "/");
+    return this$.GetAbsolutePathBy((p) => folderPath + trimStart(p, "/"), unwrap(checkExistenceFromRoot));
+  }
+  GetAbsolutePathForRun(runIdentifier, checkExistenceFromRoot) {
+    const this$ = this;
+    const folderPath = concat("runs/", runIdentifier, "/");
+    return this$.GetAbsolutePathBy((p) => folderPath + trimStart(p, "/"), unwrap(checkExistenceFromRoot));
+  }
   Copy() {
     const this$ = this;
     const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
@@ -170,9 +190,9 @@ class Data {
       const arg_2 = this$.NameText;
       return toText(printf("%s"))(arg_2);
     } else {
-      const t = value(matchValue);
+      const t = matchValue;
       const arg = this$.NameText;
-      const arg_1 = DataFile__get_AsString(t);
+      const arg_1 = t.AsString;
       return toText(printf("%s [%s]"))(arg)(arg_1);
     }
   }

package/dist/ts/ts/Core/DataContext.d.ts

@@ -1,8 +1,8 @@
 import { Option } from '@fable-org/fable-library-ts/Option.ts';
 import { OntologyAnnotation } from './OntologyAnnotation.ts';
 import { Data } from './Data.ts';
-import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
 import { ScalarValue_$union } from './ScalarValue.ts';
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
 import { DataFile_$union } from './DataFile.ts';
 import { Comment$ } from './Comment.ts';
 import { IISAPrintable } from './Helper/Printer.ts';

package/dist/ts/ts/Core/DataContext.d.ts.map

@@ -1 +1 @@
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