@nfdi4plants/arctrl 3.2.2 → 3.3.0

package/dist/ts/ts/CWL/Outputs.d.ts

@@ -1,77 +1,128 @@
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
+import { SourceNodes, DocText_$union, RawYaml, ListEntry$1_$union, CWLType_$union, SchemaSaladBool_$union, SchemaSaladString_$union } from './CWLTypes.ts';
+import { Union } from '@fable-org/fable-library-ts/Types.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 import { Option } from '@fable-org/fable-library-ts/Option.ts';
 import { LoadListingEnum_$union } from './Requirements.ts';
-import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
 import { FSharpSet } from '@fable-org/fable-library-ts/Set.ts';
 import { DynamicObj } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
-import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
-import { Union } from '@fable-org/fable-library-ts/Types.ts';
-import { CWLType_$union } from './CWLTypes.ts';
-import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0/YAMLiciousTypes.fs.js';
+export type OutputGlob_$union = OutputGlob<0> | OutputGlob<1>;
+export type OutputGlob_$cases = {
+    0: ["Single", [SchemaSaladString_$union]];
+    1: ["Multiple", [SchemaSaladString_$union[]]];
+};
+export declare function OutputGlob_Single(Item: SchemaSaladString_$union): OutputGlob<0>;
+export declare function OutputGlob_Multiple(Item: SchemaSaladString_$union[]): OutputGlob<1>;
+/**
+ * The glob of an output binding, as a single pattern or as a list of patterns. A single pattern differs from a list
+ * of one pattern, and the empty list stays an empty list, because CWL keeps the spellings apart. The lists compare by
+ * their elements, because a ResizeArray compares references. A pattern is a string or an expression, and a directive
+ * names a file with the text of the pattern.
+ */
+export declare class OutputGlob<Tag extends keyof OutputGlob_$cases> extends Union<Tag, OutputGlob_$cases[Tag][0]> {
+    constructor(tag: Tag, fields: OutputGlob_$cases[Tag][1]);
+    readonly tag: Tag;
+    readonly fields: OutputGlob_$cases[Tag][1];
+    cases(): string[];
+    AsValues(): SchemaSaladString_$union[];
+    Equals(o: any): boolean;
+    GetHashCode(): int32;
+}
+export declare function OutputGlob_$reflection(): TypeInfo;
 export declare class OutputBinding extends DynamicObj {
-    _glob: Option<string>;
-    _loadContents: Option<boolean>;
+    _glob: Option<OutputGlob_$union>;
+    _loadContents: Option<SchemaSaladBool_$union>;
     _loadListing: Option<LoadListingEnum_$union>;
-    _outputEval: Option<string>;
-    constructor(glob?: string, loadContents?: boolean, loadListing?: LoadListingEnum_$union, outputEval?: string);
-    get Glob(): string | undefined;
-    set Glob(value: Option<string>);
-    get LoadContents(): boolean | undefined;
-    set LoadContents(value: Option<boolean>);
+    _outputEval: Option<SchemaSaladString_$union>;
+    constructor(glob?: OutputGlob_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, outputEval?: SchemaSaladString_$union);
+    get Glob(): OutputGlob_$union | undefined;
+    set Glob(value: Option<OutputGlob_$union>);
+    get LoadContents(): SchemaSaladBool_$union | undefined;
+    set LoadContents(value: Option<SchemaSaladBool_$union>);
     get LoadListing(): LoadListingEnum_$union | undefined;
     set LoadListing(value: Option<LoadListingEnum_$union>);
-    get OutputEval(): string | undefined;
-    set OutputEval(value: Option<string>);
+    get OutputEval(): SchemaSaladString_$union | undefined;
+    set OutputEval(value: Option<SchemaSaladString_$union>);
     Equals(o: any): boolean;
     GetHashCode(): int32;
     static get KnownFieldNames(): FSharpSet<string>;
-    static create(glob?: string, loadContents?: boolean, loadListing?: LoadListingEnum_$union, outputEval?: string): OutputBinding;
+    static create(glob?: OutputGlob_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, outputEval?: SchemaSaladString_$union): OutputBinding;
 }
 export declare function OutputBinding_$reflection(): TypeInfo;
-export declare function OutputBinding_$ctor_Z179B3726(glob?: string, loadContents?: boolean, loadListing?: LoadListingEnum_$union, outputEval?: string): OutputBinding;
+export declare function OutputBinding_$ctor_Z53330DAB(glob?: OutputGlob_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, outputEval?: SchemaSaladString_$union): OutputBinding;
 export type OutputSource_$union = OutputSource<0> | OutputSource<1>;
 export type OutputSource_$cases = {
-    0: ["Single", [string]];
-    1: ["Multiple", [string[]]];
+    0: ["Single", [SchemaSaladString_$union]];
+    1: ["Multiple", [SchemaSaladString_$union[]]];
 };
-export declare function OutputSource_Single(Item: string): OutputSource<0>;
-export declare function OutputSource_Multiple(Item: string[]): OutputSource<1>;
+export declare function OutputSource_Single(Item: SchemaSaladString_$union): OutputSource<0>;
+export declare function OutputSource_Multiple(Item: SchemaSaladString_$union[]): OutputSource<1>;
+/**
+ * The source of an output or of a step input, as a single name or as a list of names. A name is a string, so a directive
+ * can stand in its place. A single name differs from a list of one name, because CWL keeps the two spellings apart: a
+ * list of one source with a linkMerge yields a list, and a single source yields the value itself. The lists compare by
+ * their elements, because a ResizeArray compares references.
+ */
 export declare class OutputSource<Tag extends keyof OutputSource_$cases> extends Union<Tag, OutputSource_$cases[Tag][0]> {
     constructor(tag: Tag, fields: OutputSource_$cases[Tag][1]);
     readonly tag: Tag;
     readonly fields: OutputSource_$cases[Tag][1];
     cases(): string[];
-    AsValues(): string[];
+    static single(value: SchemaSaladString_$union): OutputSource_$union;
+    static multiple(value: SchemaSaladString_$union[]): OutputSource_$union;
+    AsValues(): SchemaSaladString_$union[];
+    Equals(o: any): boolean;
+    GetHashCode(): int32;
 }
 export declare function OutputSource_$reflection(): TypeInfo;
+/**
+ * An output of a process. The outputBinding is the binding itself, or the directive that stands for the binding of a
+ * file.
+ */
 export declare class CWLOutput extends DynamicObj {
     _name: string;
     _type: Option<CWLType_$union>;
-    _outputBinding: Option<OutputBinding>;
+    _outputBinding: Option<ListEntry$1_$union<OutputBinding>>;
     _outputSource: Option<OutputSource_$union>;
-    _label: Option<string>;
-    _secondaryFiles: Option<YAMLElement_$union>;
-    _streamable: Option<boolean>;
-    _doc: Option<string>;
-    _format: Option<string>;
-    constructor(name: string, type_?: CWLType_$union, outputBinding?: OutputBinding, outputSource?: OutputSource_$union, label?: string, secondaryFiles?: YAMLElement_$union, streamable?: boolean, doc?: string, format?: string);
+    _label: Option<SchemaSaladString_$union>;
+    _secondaryFiles: Option<RawYaml>;
+    _streamable: Option<SchemaSaladBool_$union>;
+    _doc: Option<DocText_$union>;
+    _sourceNodes: SourceNodes;
+    _format: Option<SchemaSaladString_$union>;
+    constructor(name: string, type_?: CWLType_$union, outputBinding?: ListEntry$1_$union<OutputBinding>, outputSource?: OutputSource_$union, label?: SchemaSaladString_$union, secondaryFiles?: RawYaml, streamable?: SchemaSaladBool_$union, doc?: DocText_$union, format?: SchemaSaladString_$union);
     get Name(): string;
     set Name(value: string);
     get Type_(): CWLType_$union | undefined;
     set Type_(value: Option<CWLType_$union>);
-    get OutputBinding(): OutputBinding | undefined;
-    set OutputBinding(value: Option<OutputBinding>);
+    get OutputBinding(): ListEntry$1_$union<OutputBinding> | undefined;
+    set OutputBinding(value: Option<ListEntry$1_$union<OutputBinding>>);
     get OutputSource(): OutputSource_$union | undefined;
     set OutputSource(value: Option<OutputSource_$union>);
-    get Label(): string | undefined;
-    set Label(value: Option<string>);
-    get SecondaryFiles(): YAMLElement_$union | undefined;
-    set SecondaryFiles(value: Option<YAMLElement_$union>);
-    get Streamable(): boolean | undefined;
-    set Streamable(value: Option<boolean>);
-    get Doc(): string | undefined;
-    set Doc(value: Option<string>);
-    get Format(): string | undefined;
-    set Format(value: Option<string>);
+    get Label(): SchemaSaladString_$union | undefined;
+    set Label(value: Option<SchemaSaladString_$union>);
+    get SecondaryFiles(): RawYaml | undefined;
+    set SecondaryFiles(value: Option<RawYaml>);
+    get Streamable(): SchemaSaladBool_$union | undefined;
+    set Streamable(value: Option<SchemaSaladBool_$union>);
+    get Doc(): DocText_$union | undefined;
+    set Doc(value: Option<DocText_$union>);
+    /**
+     * The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
+     * They stay out of the equality and the hash of the object.
+     */
+    get SourceNodes(): SourceNodes;
+    /**
+     * The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
+     * They stay out of the equality and the hash of the object.
+     */
+    set SourceNodes(value: SourceNodes);
+    get Format(): SchemaSaladString_$union | undefined;
+    set Format(value: Option<SchemaSaladString_$union>);
+    /**
+     * Returns a new list of the sources that the document writes out as ids. The directives are left out, because they
+     * name files that the decoder does not read.
+     */
     GetOutputSources(): string[];
     Equals(o: any): boolean;
     GetHashCode(): int32;
@@ -79,5 +130,5 @@ export declare class CWLOutput extends DynamicObj {
     normalizeOutputSource(_arg: Option<OutputSource_$union>): Option<OutputSource_$union>;
 }
 export declare function CWLOutput_$reflection(): TypeInfo;
-export declare function CWLOutput_$ctor_6D2AEA18(name: string, type_?: CWLType_$union, outputBinding?: OutputBinding, outputSource?: OutputSource_$union, label?: string, secondaryFiles?: YAMLElement_$union, streamable?: boolean, doc?: string, format?: string): CWLOutput;
+export declare function CWLOutput_$ctor_64377888(name: string, type_?: CWLType_$union, outputBinding?: ListEntry$1_$union<OutputBinding>, outputSource?: OutputSource_$union, label?: SchemaSaladString_$union, secondaryFiles?: RawYaml, streamable?: SchemaSaladBool_$union, doc?: DocText_$union, format?: SchemaSaladString_$union): CWLOutput;
 //# sourceMappingURL=Outputs.d.ts.map

package/dist/ts/ts/CWL/Outputs.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Outputs.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/Outputs.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAA6D,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,kBAAkB,EAAE,cAAc,EAAE,sBAAsB,EAAiC,wBAAwB,EAAE,MAAM,eAAe,CAAC;AAGrP,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAsC,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACzG,OAAO,EAAE,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACvE,OAAO,EAAE,sBAAsB,EAAE,MAAM,mBAAmB,CAAC;AAG3D,OAAO,EAAE,SAAS,EAAE,MAAM,oCAAoC,CAAC;AAC/D,OAAO,EAA0B,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAIxG,MAAM,MAAM,iBAAiB,GACvB,UAAU,CAAC,CAAC,CAAC,GACb,UAAU,CAAC,CAAC,CAAC,CAAA;AAEnB,MAAM,MAAM,iBAAiB,GAAG;IAC5B,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,wBAAwB,CAAC,CAAC,CAAC;IAC1C,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,wBAAwB,EAAE,CAAC,CAAC,CAAA;CAChD,CAAA;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,wBAAwB,iBAE/D;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,wBAAwB,EAAE,iBAEnE;AAED;;;;;GAKG;AACH,qBAAa,UAAU,CAAC,GAAG,SAAS,MAAM,iBAAiB,CAAE,SAAQ,KAAK,CAAC,GAAG,EAAE,iBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBAC1F,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,iBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAKvD,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC;IAClB,QAAQ,CAAC,MAAM,EAAE,iBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3C,KAAK;IAGL,QAAQ,IAAI,wBAAwB,EAAE;IAItC,MAAM,CAAC,CAAC,EAAE,GAAG,GAAG,OAAO;IAKvB,WAAW,IAAI,KAAK;CAIvB;AAED,wBAAgB,sBAAsB,IAAI,QAAQ,CAEjD;AAED,qBAAa,aAAc,SAAQ,UAAU;IACzC,KAAK,EAAE,MAAM,CAAC,iBAAiB,CAAC,CAAC;IACjC,aAAa,EAAE,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAC9C,YAAY,EAAE,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAC7C,WAAW,EAAE,MAAM,CAAC,wBAAwB,CAAC,CAAC;gBAClC,IAAI,CAAC,EAAE,iBAAiB,EAAE,YAAY,CAAC,EAAE,sBAAsB,EAAE,WAAW,CAAC,EAAE,sBAAsB,EAAE,UAAU,CAAC,EAAE,wBAAwB;IAOxJ,IAAI,IAAI,IAAI,iBAAiB,GAAG,SAAS,CAGxC;IACD,IAAI,IAAI,CAAC,KAAK,EAAE,MAAM,CAAC,iBAAiB,CAAC,EAGxC;IACD,IAAI,YAAY,IAAI,sBAAsB,GAAG,SAAS,CAGrD;IACD,IAAI,YAAY,CAAC,KAAK,EAAE,MAAM,CAAC,sBAAsB,CAAC,EAGrD;IACD,IAAI,WAAW,IAAI,sBAAsB,GAAG,SAAS,CAGpD;IACD,IAAI,WAAW,CAAC,KAAK,EAAE,MAAM,CAAC,sBAAsB,CAAC,EAGpD;IACD,IAAI,UAAU,IAAI,wBAAwB,GAAG,SAAS,CAGrD;IACD,IAAI,UAAU,CAAC,KAAK,EAAE,MAAM,CAAC,wBAAwB,CAAC,EAGrD;IACD,MAAM,CAAC,CAAC,EAAE,GAAG,GAAG,OAAO;IAKvB,WAAW,IAAI,KAAK;IAIpB,MAAM,KAAK,eAAe,IAAI,SAAS,CAAC,MAAM,CAAC,CAE9C;IACD,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,iBAAiB,EAAE,YAAY,CAAC,EAAE,sBAAsB,EAAE,WAAW,CAAC,EAAE,sBAAsB,EAAE,UAAU,CAAC,EAAE,wBAAwB,GAAG,aAAa;CAG7K;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED,wBAAgB,6BAA6B,CAAC,IAAI,CAAC,EAAE,iBAAiB,EAAE,YAAY,CAAC,EAAE,sBAAsB,EAAE,WAAW,CAAC,EAAE,sBAAsB,EAAE,UAAU,CAAC,EAAE,wBAAwB,GAAG,aAAa,CAEzM;AAED,MAAM,MAAM,mBAAmB,GACzB,YAAY,CAAC,CAAC,CAAC,GACf,YAAY,CAAC,CAAC,CAAC,CAAA;AAErB,MAAM,MAAM,mBAAmB,GAAG;IAC9B,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,wBAAwB,CAAC,CAAC,CAAC;IAC1C,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,wBAAwB,EAAE,CAAC,CAAC,CAAA;CAChD,CAAA;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,wBAAwB,mBAEjE;AAED,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,wBAAwB,EAAE,mBAErE;AAED;;;;;GAKG;AACH,qBAAa,YAAY,CAAC,GAAG,SAAS,MAAM,mBAAmB,CAAE,SAAQ,KAAK,CAAC,GAAG,EAAE,mBAAmB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBAChG,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,mBAAmB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAKzD,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC;IAClB,QAAQ,CAAC,MAAM,EAAE,mBAAmB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7C,KAAK;IAGL,MAAM,CAAC,MAAM,CAAC,KAAK,EAAE,wBAAwB,GAAG,mBAAmB;IAGnE,MAAM,CAAC,QAAQ,CAAC,KAAK,EAAE,wBAAwB,EAAE,GAAG,mBAAmB;IAGvE,QAAQ,IAAI,wBAAwB,EAAE;IAItC,MAAM,CAAC,CAAC,EAAE,GAAG,GAAG,OAAO;IAKvB,WAAW,IAAI,KAAK;CAIvB;AAED,wBAAgB,wBAAwB,IAAI,QAAQ,CAEnD;AAED;;;GAGG;AACH,qBAAa,SAAU,SAAQ,UAAU;IACrC,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC,cAAc,CAAC,CAAC;IAC9B,cAAc,EAAE,MAAM,CAAC,kBAAkB,CAAC,aAAa,CAAC,CAAC,CAAC;IAC1D,aAAa,EAAE,MAAM,CAAC,mBAAmB,CAAC,CAAC;IAC3C,MAAM,EAAE,MAAM,CAAC,wBAAwB,CAAC,CAAC;IACzC,eAAe,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IACjC,WAAW,EAAE,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAC5C,IAAI,EAAE,MAAM,CAAC,cAAc,CAAC,CAAC;IAC7B,YAAY,EAAE,WAAW,CAAC;IAC1B,OAAO,EAAE,MAAM,CAAC,wBAAwB,CAAC,CAAC;gBAC9B,IAAI,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,cAAc,EAAE,aAAa,CAAC,EAAE,kBAAkB,CAAC,aAAa,CAAC,EAAE,YAAY,CAAC,EAAE,mBAAmB,EAAE,KAAK,CAAC,EAAE,wBAAwB,EAAE,cAAc,CAAC,EAAE,OAAO,EAAE,UAAU,CAAC,EAAE,sBAAsB,EAAE,GAAG,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,EAAE,wBAAwB;IAajS,IAAI,IAAI,IAAI,MAAM,CAGjB;IACD,IAAI,IAAI,CAAC,KAAK,EAAE,MAAM,EAGrB;IACD,IAAI,KAAK,IAAI,cAAc,GAAG,SAAS,CAGtC;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,cAAc,CAAC,EAGtC;IACD,IAAI,aAAa,IAAI,kBAAkB,CAAC,aAAa,CAAC,GAAG,SAAS,CAGjE;IACD,IAAI,aAAa,CAAC,KAAK,EAAE,MAAM,CAAC,kBAAkB,CAAC,aAAa,CAAC,CAAC,EAGjE;IACD,IAAI,YAAY,IAAI,mBAAmB,GAAG,SAAS,CAGlD;IACD,IAAI,YAAY,CAAC,KAAK,EAAE,MAAM,CAAC,mBAAmB,CAAC,EAGlD;IACD,IAAI,KAAK,IAAI,wBAAwB,GAAG,SAAS,CAGhD;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,wBAAwB,CAAC,EAGhD;IACD,IAAI,cAAc,IAAI,OAAO,GAAG,SAAS,CAGxC;IACD,IAAI,cAAc,CAAC,KAAK,EAAE,MAAM,CAAC,OAAO,CAAC,EAGxC;IACD,IAAI,UAAU,IAAI,sBAAsB,GAAG,SAAS,CAGnD;IACD,IAAI,UAAU,CAAC,KAAK,EAAE,MAAM,CAAC,sBAAsB,CAAC,EAGnD;IACD,IAAI,GAAG,IAAI,cAAc,GAAG,SAAS,CAGpC;IACD,IAAI,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,cAAc,CAAC,EAGpC;IACD;;;OAGG;IACH,IAAI,WAAW,IAAI,WAAW,CAG7B;IACD;;;OAGG;IACH,IAAI,WAAW,CAAC,KAAK,EAAE,WAAW,EAGjC;IACD,IAAI,MAAM,IAAI,wBAAwB,GAAG,SAAS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package/dist/ts/ts/CWL/Outputs.js

@@ -1,11 +1,52 @@
-import { unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
-import { equals, arrayHash } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { SchemaSaladString_$reflection, SourceNodes_get_Empty, SchemaSaladStringModule_tryLiteral } from './CWLTypes.js';
+import { seqEqual, mergeHashes, hashSeq, hashFields } from './HashHelpers.js';
+import { equals, safeHash, arrayHash } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { Union } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { union_type, array_type, class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { dynamicPropertiesEqual, hashDynamicProperties } from './DynamicObjHelpers.js';
 import { outputBinding, cwlOutput } from './CWLKnownFieldNames.js';
 import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
-import { class_type, union_type, string_type, array_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
-import { Union } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { choose } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
+import { ofArray } from '../../node_modules/@fable-org/fable-library-ts/List.js';
 
+function OutputGlob_Single(Item) {
+  return new OutputGlob(0, [Item]);
+}
+function OutputGlob_Multiple(Item) {
+  return new OutputGlob(1, [Item]);
+}
+class OutputGlob extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["Single", "Multiple"];
+  }
+  AsValues() {
+    const this$ = this;
+    return this$.tag === /* Multiple */
+    1 ? this$.fields[0] : [this$.fields[0]];
+  }
+  Equals(o) {
+    let other = void 0, left_1 = void 0, right_1 = void 0, left = void 0, right = void 0;
+    const this$ = this;
+    return o instanceof OutputGlob && (other = o, this$.tag === /* Multiple */
+    1 ? other.tag === /* Multiple */
+    1 && (left_1 = this$.fields[0], right_1 = other.fields[0], seqEqual(left_1, right_1)) : other.tag === /* Single */
+    0 && (left = this$.fields[0], right = other.fields[0], equals(left, right)));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return (this$.tag === /* Multiple */
+    1 ? mergeHashes(2, hashSeq(this$.fields[0])) : mergeHashes(1, safeHash(this$.fields[0]))) | 0;
+  }
+}
+function OutputGlob_$reflection() {
+  return union_type("ARCtrl.CWL.OutputGlob", [], OutputGlob, () => [[["Item", SchemaSaladString_$reflection()]], [["Item", array_type(SchemaSaladString_$reflection())]]]);
+}
 class OutputBinding extends DynamicObj {
   constructor(glob, loadContents, loadListing, outputEval) {
     super();
@@ -65,7 +106,7 @@ class OutputBinding extends DynamicObj {
 function OutputBinding_$reflection() {
   return class_type("ARCtrl.CWL.OutputBinding", void 0, OutputBinding, DynamicObj_$reflection());
 }
-function OutputBinding_$ctor_Z179B3726(glob, loadContents, loadListing, outputEval) {
+function OutputBinding_$ctor_Z53330DAB(glob, loadContents, loadListing, outputEval) {
   return new OutputBinding(glob, loadContents, loadListing, outputEval);
 }
 function OutputSource_Single(Item) {
@@ -83,14 +124,33 @@ class OutputSource extends Union {
   cases() {
     return ["Single", "Multiple"];
   }
+  static single(value) {
+    return OutputSource_Single(value);
+  }
+  static multiple(value) {
+    return OutputSource_Multiple(value);
+  }
   AsValues() {
     const this$ = this;
     return this$.tag === /* Multiple */
     1 ? this$.fields[0] : [this$.fields[0]];
   }
+  Equals(o) {
+    let other = void 0, left_1 = void 0, right_1 = void 0, left = void 0, right = void 0;
+    const this$ = this;
+    return o instanceof OutputSource && (other = o, this$.tag === /* Multiple */
+    1 ? other.tag === /* Multiple */
+    1 && (left_1 = this$.fields[0], right_1 = other.fields[0], seqEqual(left_1, right_1)) : other.tag === /* Single */
+    0 && (left = this$.fields[0], right = other.fields[0], equals(left, right)));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return (this$.tag === /* Multiple */
+    1 ? mergeHashes(2, hashSeq(this$.fields[0])) : mergeHashes(1, safeHash(this$.fields[0]))) | 0;
+  }
 }
 function OutputSource_$reflection() {
-  return union_type("ARCtrl.CWL.OutputSource", [], OutputSource, () => [[["Item", string_type]], [["Item", array_type(string_type)]]]);
+  return union_type("ARCtrl.CWL.OutputSource", [], OutputSource, () => [[["Item", SchemaSaladString_$reflection()]], [["Item", array_type(SchemaSaladString_$reflection())]]]);
 }
 class CWLOutput extends DynamicObj {
   constructor(name, type_, outputBinding, outputSource, label, secondaryFiles, streamable, doc, format) {
@@ -103,6 +163,7 @@ class CWLOutput extends DynamicObj {
     this._secondaryFiles = secondaryFiles;
     this._streamable = streamable;
     this._doc = doc;
+    this._sourceNodes = SourceNodes_get_Empty();
     this._format = format;
   }
   get Name() {
@@ -169,6 +230,22 @@ class CWLOutput extends DynamicObj {
     const this$ = this;
     this$._doc = value;
   }
+  /**
+   * The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
+   * They stay out of the equality and the hash of the object.
+   */
+  get SourceNodes() {
+    const this$ = this;
+    return this$._sourceNodes;
+  }
+  /**
+   * The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
+   * They stay out of the equality and the hash of the object.
+   */
+  set SourceNodes(value) {
+    const this$ = this;
+    this$._sourceNodes = value;
+  }
   get Format() {
     const this$ = this;
     return unwrap(this$._format);
@@ -177,12 +254,17 @@ class CWLOutput extends DynamicObj {
     const this$ = this;
     this$._format = value;
   }
+  /**
+   * Returns a new list of the sources that the document writes out as ids. The directives are left out, because they
+   * name files that the decoder does not read.
+   */
   GetOutputSources() {
     const this$ = this;
     const matchValue = this$.OutputSource;
     if (matchValue != null) {
-      const outputSource = value(matchValue);
-      return outputSource.AsValues();
+      const outputSource = matchValue;
+      const collection = choose(SchemaSaladStringModule_tryLiteral, outputSource.AsValues());
+      return Array.from(collection);
     } else {
       return [];
     }
@@ -194,45 +276,45 @@ class CWLOutput extends DynamicObj {
   }
   GetHashCode() {
     const this$ = this;
-    return arrayHash([this$.Name, this$.Type_, this$.OutputBinding, this$.OutputSource, this$.Label, this$.SecondaryFiles, this$.Streamable, this$.Doc, this$.Format, hashDynamicProperties(this$)]) | 0;
+    return hashFields(ofArray([this$.Name, this$.Type_, this$.OutputBinding, this$.OutputSource, this$.Label, this$.SecondaryFiles, this$.Streamable, this$.Doc, this$.Format, hashDynamicProperties(this$)])) | 0;
   }
   static get KnownFieldNames() {
     return cwlOutput;
   }
   normalizeOutputSource(_arg) {
     let values = void 0;
-    let matchResult = void 0, values_1 = void 0, value$1 = void 0;
+    let matchResult = void 0, values_1 = void 0, value = void 0;
     if (_arg != null) {
-      if (value(_arg).tag === /* Multiple */
+      if (_arg.tag === /* Multiple */
       1) {
-        if (values = value(_arg).fields[0], values.length === 0) {
+        if (values = _arg.fields[0], values.length === 0) {
           matchResult = 0;
-          values_1 = value(_arg).fields[0];
+          values_1 = _arg.fields[0];
         } else {
           matchResult = 1;
-          value$1 = _arg;
+          value = _arg;
         }
       } else {
         matchResult = 1;
-        value$1 = _arg;
+        value = _arg;
       }
     } else {
       matchResult = 1;
-      value$1 = _arg;
+      value = _arg;
     }
     switch (matchResult) {
       case 0:
         return void 0;
       default:
-        return value$1;
+        return value;
     }
   }
 }
 function CWLOutput_$reflection() {
   return class_type("ARCtrl.CWL.CWLOutput", void 0, CWLOutput, DynamicObj_$reflection());
 }
-function CWLOutput_$ctor_6D2AEA18(name, type_, outputBinding, outputSource, label, secondaryFiles, streamable, doc, format) {
+function CWLOutput_$ctor_64377888(name, type_, outputBinding, outputSource, label, secondaryFiles, streamable, doc, format) {
   return new CWLOutput(name, type_, outputBinding, outputSource, label, secondaryFiles, streamable, doc, format);
 }
 
-export { CWLOutput, CWLOutput_$ctor_6D2AEA18, CWLOutput_$reflection, OutputBinding, OutputBinding_$ctor_Z179B3726, OutputBinding_$reflection, OutputSource, OutputSource_$reflection, OutputSource_Multiple, OutputSource_Single };
+export { CWLOutput, CWLOutput_$ctor_64377888, CWLOutput_$reflection, OutputBinding, OutputBinding_$ctor_Z53330DAB, OutputBinding_$reflection, OutputGlob, OutputGlob_$reflection, OutputGlob_Multiple, OutputGlob_Single, OutputSource, OutputSource_$reflection, OutputSource_Multiple, OutputSource_Single };

package/dist/ts/ts/CWL/ParameterReference.d.ts

@@ -2,28 +2,31 @@ import { Option } from '@fable-org/fable-library-ts/Option.ts';
 import { CWLParameterValue_$union } from './ParameterValue.ts';
 import { CWLType_$union } from './CWLTypes.ts';
 import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
-import { FSharpSet } from '@fable-org/fable-library-ts/Set.ts';
-import { DynamicObj } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
 import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
-export declare class CWLParameterReference extends DynamicObj {
+/**
+ * An entry of a job file: the key of a process input and the CWL value that the file gives it. The value is a plain
+ * CWL value, so the file has no place for the type of the input. The type belongs to the process that runs.
+ */
+export declare class CWLParameterReference {
     _key: string;
     _value: Option<CWLParameterValue_$union>;
-    _type: Option<CWLType_$union>;
-    constructor(key: string, values?: string[], value?: CWLParameterValue_$union, type_?: CWLType_$union);
+    constructor(key: string, values?: string[], value?: CWLParameterValue_$union);
     get Key(): string;
     set Key(value: string);
     get Value(): CWLParameterValue_$union | undefined;
     set Value(value: Option<CWLParameterValue_$union>);
     get Values(): string[];
     set Values(values: string[]);
+    /**
+     * The type that the value shows by itself. A File shows File and a Directory shows Directory. A list of them shows an
+     * array of that type. Any other value shows no type. A job file holds no type, so the type comes from the value.
+     */
     get Type(): CWLType_$union | undefined;
-    set Type(value: Option<CWLType_$union>);
     GetHashCode(): int32;
     Equals(obj: any): boolean;
     StructurallyEquals(other: CWLParameterReference): boolean;
     ReferenceEquals(other: CWLParameterReference): boolean;
-    static get KnownFieldNames(): FSharpSet<string>;
 }
 export declare function CWLParameterReference_$reflection(): TypeInfo;
-export declare function CWLParameterReference_$ctor_Z1832860(key: string, values?: string[], value?: CWLParameterValue_$union, type_?: CWLType_$union): CWLParameterReference;
+export declare function CWLParameterReference_$ctor_6BA77A4(key: string, values?: string[], value?: CWLParameterValue_$union): CWLParameterReference;
 //# sourceMappingURL=ParameterReference.d.ts.map

package/dist/ts/ts/CWL/ParameterReference.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ParameterReference.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/ParameterReference.ts"],"names":[],"mappings":"AACA,OAAO,EAAgC,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACrG,OAAO,EAAkF,wBAAwB,EAAE,MAAM,qBAAqB,CAAC;AAC/I,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAG7D,OAAO,EAAE,SAAS,EAAE,MAAM,oCAAoC,CAAC;AAC/D,OAAO,EAA0B,UAAU,EAAE,MAAM,oDAAoD,CAAC;AACxG,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,qBAAa,qBAAsB,SAAQ,UAAU;IACjD,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC,wBAAwB,CAAC,CAAC;IACzC,KAAK,EAAE,MAAM,CAAC,cAAc,CAAC,CAAC;gBAClB,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,wBAAwB,EAAE,KAAK,CAAC,EAAE,cAAc;IAOpG,IAAI,GAAG,IAAI,MAAM,CAGhB;IACD,IAAI,GAAG,CAAC,KAAK,EAAE,MAAM,EAGpB;IACD,IAAI,KAAK,IAAI,wBAAwB,GAAG,SAAS,CAGhD;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,wBAAwB,CAAC,EAGhD;IACD,IAAI,MAAM,IAAI,MAAM,EAAE,CAIrB;IACD,IAAI,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,EAG1B;IACD,IAAI,IAAI,IAAI,cAAc,GAAG,SAAS,CAGrC;IACD,IAAI,IAAI,CAAC,KAAK,EAAE,MAAM,CAAC,cAAc,CAAC,EAGrC;IACD,WAAW,IAAI,KAAK;IAIpB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAKzB,kBAAkB,CAAC,KAAK,EAAE,qBAAqB,GAAG,OAAO;IAIzD,eAAe,CAAC,KAAK,EAAE,qBAAqB,GAAG,OAAO;IAItD,MAAM,KAAK,eAAe,IAAI,SAAS,CAAC,MAAM,CAAC,CAE9C;CACJ;AAED,wBAAgB,iCAAiC,IAAI,QAAQ,CAE5D;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,wBAAwB,EAAE,KAAK,CAAC,EAAE,cAAc,GAAG,qBAAqB,CAEpK"}
+{"version":3,"file":"ParameterReference.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/ParameterReference.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACnF,OAAO,EAAwH,wBAAwB,EAAE,MAAM,qBAAqB,CAAC;AACrL,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAE7D,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF;;;GAGG;AACH,qBAAa,qBAAqB;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC,wBAAwB,CAAC,CAAC;gBAC7B,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,wBAAwB;IAK5E,IAAI,GAAG,IAAI,MAAM,CAGhB;IACD,IAAI,GAAG,CAAC,KAAK,EAAE,MAAM,EAGpB;IACD,IAAI,KAAK,IAAI,wBAAwB,GAAG,SAAS,CAGhD;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,wBAAwB,CAAC,EAGhD;IACD,IAAI,MAAM,IAAI,MAAM,EAAE,CAIrB;IACD,IAAI,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,EAG1B;IACD;;;OAGG;IACH,IAAI,IAAI,IAAI,cAAc,GAAG,SAAS,CAIrC;IACD,WAAW,IAAI,KAAK;IAIpB,MAAM,CAAC,GAAG,EAAE,GAAG,GAAG,OAAO;IAKzB,kBAAkB,CAAC,KAAK,EAAE,qBAAqB,GAAG,OAAO;IAIzD,eAAe,CAAC,KAAK,EAAE,qBAAqB,GAAG,OAAO;CAIzD;AAED,wBAAgB,iCAAiC,IAAI,QAAQ,CAE5D;AAED,wBAAgB,mCAAmC,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,wBAAwB,GAAG,qBAAqB,CAE3I"}

package/dist/ts/ts/CWL/ParameterReference.js

@@ -1,19 +1,14 @@
-import { value, unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
-import { CWLParameterValueModule_fromFlatStrings, CWLParameterValueModule_toFlatStrings } from './ParameterValue.js';
+import { unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { CWLParameterValueModule_fromFlatStrings, CWLParameterValueModule_toFlatStrings, CWLParameterValueModule_tryInferType } from './ParameterValue.js';
 import { boxHashArray, hash, boxHashOption } from './HashHelpers.js';
-import { hashDynamicProperties, dynamicPropertiesEqual } from './DynamicObjHelpers.js';
 import { equals } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
-import { parameterReference } from './CWLKnownFieldNames.js';
-import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
 import { class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
 
-class CWLParameterReference extends DynamicObj {
-  constructor(key, values, value$1, type_) {
-    super();
+class CWLParameterReference {
+  constructor(key, values, value) {
     let option_3 = void 0, option_1 = void 0;
     this._key = key;
-    this._value = (option_3 = value$1, option_3 != null ? option_3 : (option_1 = values, option_1 != null ? CWLParameterValueModule_fromFlatStrings(value(option_1)) : void 0));
-    this._type = type_;
+    this._value = (option_3 = value, option_3 != null ? option_3 : (option_1 = values, option_1 != null ? CWLParameterValueModule_fromFlatStrings(option_1) : void 0));
   }
   get Key() {
     const this$ = this;
@@ -34,23 +29,24 @@ class CWLParameterReference extends DynamicObj {
   get Values() {
     let option_1 = void 0;
     const this$ = this;
-    return defaultArg((option_1 = this$._value, option_1 != null ? CWLParameterValueModule_toFlatStrings(value(option_1)) : void 0), []);
+    return defaultArg((option_1 = this$._value, option_1 != null ? CWLParameterValueModule_toFlatStrings(option_1) : void 0), []);
   }
   set Values(values) {
     const this$ = this;
     this$._value = CWLParameterValueModule_fromFlatStrings(values);
   }
+  /**
+   * The type that the value shows by itself. A File shows File and a Directory shows Directory. A list of them shows an
+   * array of that type. Any other value shows no type. A job file holds no type, so the type comes from the value.
+   */
   get Type() {
+    let option_1 = void 0;
     const this$ = this;
-    return unwrap(this$._type);
-  }
-  set Type(value) {
-    const this$ = this;
-    this$._type = value;
+    return unwrap((option_1 = this$._value, option_1 != null ? CWLParameterValueModule_tryInferType(option_1) : void 0));
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([hash(this$.Key), boxHashOption(this$.Value), boxHashOption(this$.Type), hashDynamicProperties(this$)]) | 0;
+    return boxHashArray([hash(this$.Key), boxHashOption(this$.Value)]) | 0;
   }
   Equals(obj) {
     let other = void 0;
@@ -59,21 +55,18 @@ class CWLParameterReference extends DynamicObj {
   }
   StructurallyEquals(other) {
     const this$ = this;
-    return this$.Key === other.Key && equals(this$.Value, other.Value) && equals(this$.Type, other.Type) && dynamicPropertiesEqual(this$, other);
+    return this$.Key === other.Key && equals(this$.Value, other.Value);
   }
   ReferenceEquals(other) {
     const this$ = this;
     return this$ === other;
   }
-  static get KnownFieldNames() {
-    return parameterReference;
-  }
 }
 function CWLParameterReference_$reflection() {
-  return class_type("ARCtrl.CWL.CWLParameterReference", void 0, CWLParameterReference, DynamicObj_$reflection());
+  return class_type("ARCtrl.CWL.CWLParameterReference", void 0, CWLParameterReference);
 }
-function CWLParameterReference_$ctor_Z1832860(key, values, value, type_) {
-  return new CWLParameterReference(key, values, value, type_);
+function CWLParameterReference_$ctor_6BA77A4(key, values, value) {
+  return new CWLParameterReference(key, values, value);
 }
 
-export { CWLParameterReference, CWLParameterReference_$ctor_Z1832860, CWLParameterReference_$reflection };
+export { CWLParameterReference, CWLParameterReference_$ctor_6BA77A4, CWLParameterReference_$reflection };

package/dist/ts/ts/CWL/ParameterValue.d.ts

@@ -44,6 +44,15 @@ export declare class CWLParameterValue<Tag extends keyof CWLParameterValue_$case
     readonly fields: CWLParameterValue_$cases[Tag][1];
     cases(): string[];
     static readonly Null: any;
+    static null(): CWLParameterValue_$union;
+    static string(value: string): CWLParameterValue_$union;
+    static int(value: int64): CWLParameterValue_$union;
+    static float(value: float64): CWLParameterValue_$union;
+    static boolean(value: boolean): CWLParameterValue_$union;
+    static file(value: FileInstance): CWLParameterValue_$union;
+    static directory(value: DirectoryInstance): CWLParameterValue_$union;
+    static array(value: CWLParameterValue_$union[]): CWLParameterValue_$union;
+    static record(value: CWLParameterRecordField[]): CWLParameterValue_$union;
     Equals(other: any): boolean;
     GetHashCode(): int32;
 }
@@ -52,6 +61,11 @@ export declare function CWLParameterValueModule_floatToRoundTripString(value: fl
 export declare function CWLParameterValueModule_tryParseInt64(value: any): Option<int64>;
 export declare function CWLParameterValueModule_tryParseFloat(value: any): Option<float64>;
 export declare function CWLParameterValueModule_toFlatStrings(value: CWLParameterValue_$union): string[];
-export declare function CWLParameterValueModule_fromFlatStrings(values: string[]): Option<CWLParameterValue_$union>;
+/**
+ * The type that a value shows by itself. A File shows File and a Directory shows Directory. A list whose items all
+ * show the same type shows an array of that type. Any other value shows no type, because a job file gives scalars
+ * and records without one.
+ */
 export declare function CWLParameterValueModule_tryInferType(value: CWLParameterValue_$union): Option<CWLType_$union>;
+export declare function CWLParameterValueModule_fromFlatStrings(values: string[]): Option<CWLParameterValue_$union>;
 //# sourceMappingURL=ParameterValue.d.ts.map

package/dist/ts/ts/CWL/ParameterValue.d.ts.map

@@ -1 +1 @@
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