@nfdi4plants/arctrl 3.2.2 → 3.3.0

package/dist/ts/ts/ContractIO/ContractIO.js

@@ -5,11 +5,15 @@ import { Contract } from '../Contract/Contract.js';
 import { curry2 } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { PromiseBuilder__Run_212F1D4B, PromiseBuilder__Delay_62FBFDE1 } from '../fable_modules/Fable.Promise.3.2.0/Promise.fs.js';
 import { promise } from '../fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js';
-import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
-import { combine } from '../FileSystem/Path.js';
-import { readFileTextAsync, readFileXlsxAsync, fileExistsAsync, ensureDirectoryOfFileAsync, writeFileTextAsync, writeFileXlsxAsync, renameFileOrDirectoryAsync, deleteFileOrDirectoryAsync } from './FileSystemHelper.js';
+import { combine, split } from '../FileSystem/Path.js';
+import { readFileTextAsync, readFileXlsxAsync, isEmptyFileAsync, fileExistsAsync, ensureDirectoryOfFileAsync, writeFileTextAsync, writeFileXlsxAsync, renameFileOrDirectoryAsync, deleteFileOrDirectoryAsync } from './FileSystemHelper.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js';
-import { fold, append } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
+import { item, fold, append } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
+import { ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from '../Spreadsheet/ArcAssay.js';
+import { ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from '../Core/ArcTypes.js';
+import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from '../Spreadsheet/ArcStudy.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E } from '../Spreadsheet/ArcWorkflow.js';
+import { ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8 } from '../Spreadsheet/ArcRun.js';
 
 function fulfillReadContractAsync(basePath, c) {
   return catchWith((e_1) => {
@@ -19,7 +23,7 @@ function fulfillReadContractAsync(basePath, c) {
     const matchValue = c.DTOType;
     let matchResult = void 0;
     if (matchValue != null) {
-      switch (value(matchValue)) {
+      switch (matchValue) {
         case "ISA_Assay":
         case "ISA_Investigation":
         case "ISA_Study":
@@ -58,6 +62,79 @@ function fulfillReadContractAsync(basePath, c) {
     return Promise.resolve(FSharpResult$2_Error$((arg_2 = _arg_2.message, toText(printf("Error reading contract %s: %s"))(c.Path)(arg_2))));
   }))));
 }
+function tryFulfillEmptyEntityContractAsync(basePath, c) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
+    const matchValue = c.DTOType;
+    let matchResult = void 0;
+    if (matchValue != null) {
+      switch (matchValue) {
+        case "ISA_Assay":
+        case "ISA_Study":
+        case "ISA_Workflow":
+        case "ISA_Run": {
+          matchResult = 0;
+          break;
+        }
+        default:
+          matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+    switch (matchResult) {
+      case 0:
+        return isEmptyFileAsync(combine(basePath, c.Path)).then((_arg) => {
+          if (_arg) {
+            const identifier = item(1, split(c.Path));
+            let wb;
+            const matchValue_1 = c.DTOType;
+            let matchResult_1 = void 0;
+            if (matchValue_1 != null) {
+              switch (matchValue_1) {
+                case "ISA_Assay": {
+                  matchResult_1 = 0;
+                  break;
+                }
+                case "ISA_Study": {
+                  matchResult_1 = 1;
+                  break;
+                }
+                case "ISA_Workflow": {
+                  matchResult_1 = 2;
+                  break;
+                }
+                default:
+                  matchResult_1 = 3;
+              }
+            } else {
+              matchResult_1 = 3;
+            }
+            switch (matchResult_1) {
+              case 0: {
+                wb = ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(new ArcAssay(identifier));
+                break;
+              }
+              case 1: {
+                wb = ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(new ArcStudy(identifier));
+                break;
+              }
+              case 2: {
+                wb = ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(new ArcWorkflow(identifier));
+                break;
+              }
+              default:
+                wb = ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(new ArcRun(identifier));
+            }
+            return Promise.resolve(new Contract(c.Operation, c.Path, c.DTOType, wb));
+          } else {
+            return Promise.resolve(void 0);
+          }
+        });
+      default:
+        return Promise.resolve(void 0);
+    }
+  }));
+}
 function fullfillContractBatchAsyncBy(contractF, basePath, cs) {
   return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => startSequential(curry2(contractF)(basePath), cs).then((_arg) => {
     const res = fold((acc, cr) => {
@@ -105,12 +182,12 @@ function fulfillWriteContractAsync(forceOverwrite, basePath, c) {
       if (matchValue == null) {
         const path_2 = combine(basePath, c.Path);
         return ensureDirectoryOfFileAsync(path_2).then(() => writeFileTextAsync(path_2, "").then(() => Promise.resolve(FSharpResult$2_Ok(c))));
-      } else if (typeof value(matchValue) === "string") {
-        const t = value(matchValue);
+      } else if (typeof matchValue === "string") {
+        const t = matchValue;
         const path = combine(basePath, c.Path);
         return ensureDirectoryOfFileAsync(path).then(() => writeFileTextAsync(path, t).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
-      } else if (value(matchValue) instanceof FsWorkbook) {
-        const wb = value(matchValue);
+      } else if (matchValue instanceof FsWorkbook) {
+        const wb = matchValue;
         const path_1 = combine(basePath, c.Path);
         return ensureDirectoryOfFileAsync(path_1).then(() => writeFileXlsxAsync(path_1, wb).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
       } else {
@@ -131,12 +208,12 @@ function fulfillUpdateContractAsync(basePath, c) {
     if (matchValue == null) {
       const path_2 = combine(basePath, c.Path);
       return ensureDirectoryOfFileAsync(path_2).then(() => writeFileTextAsync(path_2, "").then(() => Promise.resolve(FSharpResult$2_Ok(c))));
-    } else if (typeof value(matchValue) === "string") {
-      const t = value(matchValue);
+    } else if (typeof matchValue === "string") {
+      const t = matchValue;
       const path = combine(basePath, c.Path);
       return ensureDirectoryOfFileAsync(path).then(() => writeFileTextAsync(path, t).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
-    } else if (value(matchValue) instanceof FsWorkbook) {
-      const wb = value(matchValue);
+    } else if (matchValue instanceof FsWorkbook) {
+      const wb = matchValue;
       const path_1 = combine(basePath, c.Path);
       return ensureDirectoryOfFileAsync(path_1).then(() => writeFileXlsxAsync(path_1, wb).then(() => Promise.resolve(FSharpResult$2_Ok(c))));
     } else {
@@ -155,13 +232,13 @@ function fullfillRenameContractAsync(basePath, c) {
     const matchValue = c.DTO;
     let matchResult = void 0, t_1 = void 0, t_2 = void 0;
     if (matchValue != null) {
-      if (typeof value(matchValue) === "string") {
-        if (value(matchValue) === c.Path) {
+      if (typeof matchValue === "string") {
+        if (matchValue === c.Path) {
           matchResult = 0;
-          t_1 = value(matchValue);
+          t_1 = matchValue;
         } else {
           matchResult = 1;
-          t_2 = value(matchValue);
+          t_2 = matchValue;
         }
       } else {
         matchResult = 2;
@@ -210,4 +287,4 @@ function fullFillContractBatchAsync(forceOverwrite, basePath, cs) {
   return fullfillContractBatchAsyncBy((basePath_1, c) => fullFillContract(forceOverwrite, basePath_1, c), basePath, cs);
 }
 
-export { fulfillReadContractAsync, fulfillUpdateContractAsync, fulfillWriteContractAsync, fullFillContract, fullFillContractBatchAsync, fullfillContractBatchAsyncBy, fullfillDeleteContractAsync, fullfillRenameContractAsync };
+export { fulfillReadContractAsync, fulfillUpdateContractAsync, fulfillWriteContractAsync, fullFillContract, fullFillContractBatchAsync, fullfillContractBatchAsyncBy, fullfillDeleteContractAsync, fullfillRenameContractAsync, tryFulfillEmptyEntityContractAsync };

package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts

@@ -21,6 +21,7 @@ export declare function createDirectoryAsync(path: string): Promise<void>;
 export declare function ensureDirectoryAsync(path: string): Promise<void>;
 export declare function ensureDirectoryOfFileAsync(filePath: string): Promise<void>;
 export declare function fileExistsAsync(path: string): Promise<boolean>;
+export declare function isEmptyFileAsync(path: string): Promise<boolean>;
 export declare function readFileTextAsync(path: string): Promise<string>;
 export declare function readFileBinaryAsync(path: string): Promise<MutableArray<uint8>>;
 export declare function readFileXlsxAsync(path: string): Promise<FsWorkbook>;

package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map

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package/dist/ts/ts/ContractIO/FileSystemHelper.js

@@ -5,6 +5,7 @@ import { trim as trim$1, replace, substring } from '../../node_modules/@fable-or
 import { choose, map } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { isEmpty, empty, map as map$1, concat, append, toArray } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { all } from '../CrossAsync.js';
+import { getFileName } from '../FileSystem/Path.js';
 
 function FS_stat_Z721C83C5(path) {
   const props = path;
@@ -159,6 +160,9 @@ function fileExistsAsync(path) {
   const pr = PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_stat_Z721C83C5(path).then((_arg) => Promise.resolve(_arg.isFile()))));
   return pr.catch((_arg_1) => false);
 }
+function isEmptyFileAsync(path) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_stat_Z721C83C5(path).then((_arg) => Promise.resolve(_arg.size === 0))));
+}
 function readFileTextAsync(path) {
   return FS_readFileText_Z721C83C5(path);
 }
@@ -248,10 +252,13 @@ function getAllFilePathsAsync(directoryPath) {
   return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
     const allFiles = (dirs) => PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => isEmpty(dirs) ? Promise.resolve(empty()) : all(map$1(getSubFilesAsync, dirs)).then((_arg) => {
       const subFiles_1 = concat(_arg);
-      return all(map$1(getSubDirectoriesAsync, dirs)).then((_arg_1) => all(map$1(allFiles, _arg_1)).then((_arg_2) => {
-        const subDirContents_1 = concat(_arg_2);
-        return Promise.resolve(append(subDirContents_1, subFiles_1));
-      }));
+      return all(map$1(getSubDirectoriesAsync, dirs)).then((_arg_1) => {
+        const subDirs_1 = map$1((array) => array.filter((d) => getFileName(d) !== ".git"), _arg_1);
+        return all(map$1(allFiles, subDirs_1)).then((_arg_2) => {
+          const subDirContents_1 = concat(_arg_2);
+          return Promise.resolve(append(subDirContents_1, subFiles_1));
+        });
+      });
     })));
     return allFiles([directoryPath_1]).then((_arg_3) => {
       const allFilesRelative = map((arg_2) => standardizeSlashes(makeRelative(directoryPath_1, arg_2)), toArray(_arg_3));
@@ -282,4 +289,4 @@ function deleteFileOrDirectoryAsync(path) {
   }))));
 }
 
-export { FS_mkdir, FS_readFile, FS_readFileBinary_Z721C83C5, FS_readFileText_Z721C83C5, FS_readdir, FS_rename, FS_rm, FS_stat_Z721C83C5, FS_unlink_Z721C83C5, FS_writeFile, FS_writeFileBinary, FS_writeFileText, PathModule_dirname_Z721C83C5, PathModule_join_Z35CD86D0, createDirectoryAsync, deleteDirectoryAsync, deleteFileAsync, deleteFileOrDirectoryAsync, directoryExistsAsync, ensureDirectoryAsync, ensureDirectoryOfFileAsync, fileExistsAsync, getAllFilePathsAsync, getSubDirectoriesAsync, getSubFilesAsync, makeRelative, moveDirectoryAsync, moveFileAsync, readFileBinaryAsync, readFileTextAsync, readFileXlsxAsync, renameFileOrDirectoryAsync, standardizeSlashes, trim, writeFileBinaryAsync, writeFileTextAsync, writeFileXlsxAsync };
+export { FS_mkdir, FS_readFile, FS_readFileBinary_Z721C83C5, FS_readFileText_Z721C83C5, FS_readdir, FS_rename, FS_rm, FS_stat_Z721C83C5, FS_unlink_Z721C83C5, FS_writeFile, FS_writeFileBinary, FS_writeFileText, PathModule_dirname_Z721C83C5, PathModule_join_Z35CD86D0, createDirectoryAsync, deleteDirectoryAsync, deleteFileAsync, deleteFileOrDirectoryAsync, directoryExistsAsync, ensureDirectoryAsync, ensureDirectoryOfFileAsync, fileExistsAsync, getAllFilePathsAsync, getSubDirectoriesAsync, getSubFilesAsync, isEmptyFileAsync, makeRelative, moveDirectoryAsync, moveFileAsync, readFileBinaryAsync, readFileTextAsync, readFileXlsxAsync, renameFileOrDirectoryAsync, standardizeSlashes, trim, writeFileBinaryAsync, writeFileTextAsync, writeFileXlsxAsync };

package/dist/ts/ts/Conversion/Assay.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAIpD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAQjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAkBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAyB/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAiBtH"}
+{"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAYzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAIpD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAQjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAuBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CA0B/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAiBtH"}

package/dist/ts/ts/Conversion/Assay.js

@@ -1,13 +1,15 @@
 import { class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
-import { ResizeArray_distinct, ResizeArray_append, ResizeArray_choose, ResizeArray_collect, ResizeArray_filter, ResizeArray_map, ResizeArray_tryFind, Option_fromSeq, ResizeArray_groupBy, ResizeArray_singleton, ResizeArray_appendSingleton, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
+import { distinctBy } from '../../node_modules/@fable-org/fable-library-ts/Seq2.js';
+import { ResizeArray_append, ResizeArray_choose, ResizeArray_collect, ResizeArray_filter, ResizeArray_map, ResizeArray_tryFind, Option_fromSeq, ResizeArray_groupBy, ResizeArray_singleton, ResizeArray_appendSingleton, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
 import { LDPropertyValue } from '../ROCrate/LDTypes/PropertyValue.js';
-import { unwrap, defaultArg, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { LDLabProcess } from '../ROCrate/LDTypes/LabProcess.js';
+import { stringHash } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { DataAux_pathAndSelectorFromName } from '../Core/Data.js';
 import { LDFile } from '../ROCrate/LDTypes/File.js';
 import { item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
-import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
+import { BaseTypes_warnIfTitleEmpty_Z2FC25A28, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
 import { ArcAssay } from '../Core/ArcTypes.js';
 import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
 import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
@@ -24,59 +26,65 @@ function AssayConversion_$reflection() {
   return class_type("ARCtrl.Conversion.AssayConversion", void 0, AssayConversion);
 }
 function AssayConversion_getDataFilesFromProcesses_6BABD1B0(processes, fragmentDescriptors, graph, context) {
-  const data = ResizeArray_distinct(ResizeArray_append(ResizeArray_choose((df) => LDPropertyValue.tryGetSubjectOf(df, unwrap(graph), unwrap(context)), defaultArg(fragmentDescriptors, [])), ResizeArray_collect((p) => ResizeArray_append(LDLabProcess.getObjectsAsData(p, unwrap(graph), unwrap(context)), LDLabProcess.getResultsAsData(p, unwrap(graph), unwrap(context))), processes)));
-  const files = ResizeArray_filter((d) => DataAux_pathAndSelectorFromName(d.Id)[1] == null, data);
+  let data;
+  const collection = distinctBy((d) => d.Id, ResizeArray_append(ResizeArray_choose((df) => LDPropertyValue.tryGetSubjectOf(df, unwrap(graph), unwrap(context)), defaultArg(fragmentDescriptors, [])), ResizeArray_collect((p) => ResizeArray_append(LDLabProcess.getObjectsAsData(p, unwrap(graph), unwrap(context)), LDLabProcess.getResultsAsData(p, unwrap(graph), unwrap(context))), processes)), {
+    Equals: (x, y) => x === y,
+    GetHashCode: (x) => stringHash(x) | 0
+  });
+  data = Array.from(collection);
+  const files = ResizeArray_filter((d_1) => DataAux_pathAndSelectorFromName(d_1.Id)[1] == null, data);
   return ResizeArray_append(files, ResizeArray_map((tupledArg) => {
     const path = tupledArg[0];
     const fragments = tupledArg[1];
     let file;
-    const matchValue = ResizeArray_tryFind((d_3) => d_3.Id === path, files);
+    const matchValue = ResizeArray_tryFind((d_4) => d_4.Id === path, files);
     if (matchValue == null) {
       const comments = Option_fromSeq(LDFile.getComments(item(0, fragments), unwrap(graph), unwrap(context)));
       file = LDFile.create(path, path, unwrap(comments), unwrap(LDFile.tryGetDisambiguatingDescriptionAsString(item(0, fragments), unwrap(context))), unwrap(LDFile.tryGetEncodingFormatAsString(item(0, fragments), unwrap(context))), void 0, unwrap(item(0, fragments).TryGetContext()));
     } else {
-      file = value(matchValue);
+      file = matchValue;
     }
     LDDataset.setHasParts(file, fragments, unwrap(context));
     return file;
-  }, ResizeArray_groupBy((d_2) => DataAux_pathAndSelectorFromName(d_2.Id)[0], ResizeArray_filter((d_1) => DataAux_pathAndSelectorFromName(d_1.Id)[1] != null, data))));
+  }, ResizeArray_groupBy((d_3) => DataAux_pathAndSelectorFromName(d_3.Id)[0], ResizeArray_filter((d_2) => DataAux_pathAndSelectorFromName(d_2.Id)[1] != null, data))));
 }
 function AssayConversion_composeAssay_Z5C53FD5C(assay, fs) {
   let i = void 0, collection = void 0, fds_1 = void 0, vm_1 = void 0, fds = void 0, vm = void 0;
+  BaseTypes_warnIfTitleEmpty_Z2FC25A28("Assay", assay.Identifier, assay.Title);
   let measurementMethod;
   const option_1 = assay.TechnologyType;
-  measurementMethod = option_1 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(value(option_1)) : void 0;
+  measurementMethod = option_1 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(option_1) : void 0;
   let measurementTechnique;
   const option_3 = assay.TechnologyPlatform;
-  measurementTechnique = option_3 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(value(option_3)) : void 0;
+  measurementTechnique = option_3 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(option_3) : void 0;
   let variableMeasured;
   const option_5 = assay.MeasurementType;
-  variableMeasured = option_5 != null ? BaseTypes_composePropertyValueFromOA_ZDED3A0F(value(option_5)) : void 0;
+  variableMeasured = option_5 != null ? BaseTypes_composePropertyValueFromOA_ZDED3A0F(option_5) : void 0;
   let persons;
   const option_7 = assay.Investigation;
-  persons = option_7 != null ? (i = value(option_7), i.GetAllPersons()) : void 0;
+  persons = option_7 != null ? (i = option_7, i.GetAllPersons()) : void 0;
   const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), assay.Performers));
   const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(assay.Tables), assay.Identifier, void 0, unwrap(fs)), Array.from(collection)));
   let fragmentDescriptors;
   const option_9 = assay.Datamap;
-  fragmentDescriptors = option_9 != null ? DatamapConversion_composeFragmentDescriptors_Z892BFC3(value(option_9)) : void 0;
+  fragmentDescriptors = option_9 != null ? DatamapConversion_composeFragmentDescriptors_Z892BFC3(option_9) : void 0;
   let dataFiles;
   const option_11 = processSequence;
-  dataFiles = option_11 != null ? AssayConversion_getDataFilesFromProcesses_6BABD1B0(value(option_11), unwrap(fragmentDescriptors)) : void 0;
-  const variableMeasureds = variableMeasured == null ? fragmentDescriptors == null ? void 0 : (fds_1 = value(fragmentDescriptors), fds_1) : fragmentDescriptors == null ? (vm_1 = value(variableMeasured), ResizeArray_singleton(vm_1)) : (fds = value(fragmentDescriptors), vm = value(variableMeasured), ResizeArray_appendSingleton(vm, fds));
+  dataFiles = option_11 != null ? AssayConversion_getDataFilesFromProcesses_6BABD1B0(option_11, unwrap(fragmentDescriptors)) : void 0;
+  const variableMeasureds = variableMeasured == null ? fragmentDescriptors == null ? void 0 : (fds_1 = fragmentDescriptors, fds_1) : fragmentDescriptors == null ? (vm_1 = variableMeasured, ResizeArray_singleton(vm_1)) : (fds = fragmentDescriptors, vm = variableMeasured, ResizeArray_appendSingleton(vm, fds));
   const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, assay.Comments));
   return LDDataset.createAssay(assay.Identifier, void 0, unwrap(assay.Title), unwrap(assay.Description), unwrap(creators), unwrap(dataFiles), unwrap(measurementMethod), unwrap(measurementTechnique), unwrap(variableMeasureds), unwrap(processSequence), unwrap(comments));
 }
 function AssayConversion_decomposeAssay_Z6839B9E8(assay, graph, context) {
   let measurementMethod;
   const option_1 = LDDataset.tryGetMeasurementMethodAsDefinedTerm(assay, unwrap(graph), unwrap(context));
-  measurementMethod = option_1 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(value(option_1), unwrap(context)) : void 0;
+  measurementMethod = option_1 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(option_1, unwrap(context)) : void 0;
   let measurementTechnique;
   const option_3 = LDDataset.tryGetMeasurementTechniqueAsDefinedTerm(assay, unwrap(graph), unwrap(context));
-  measurementTechnique = option_3 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(value(option_3), unwrap(context)) : void 0;
+  measurementTechnique = option_3 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(option_3, unwrap(context)) : void 0;
   let variableMeasured;
   const option_5 = LDDataset.tryGetVariableMeasuredAsMeasurementType(assay, unwrap(graph), unwrap(context));
-  variableMeasured = option_5 != null ? BaseTypes_decomposePropertyValueToOA_Z2F770004(value(option_5), unwrap(context)) : void 0;
+  variableMeasured = option_5 != null ? BaseTypes_decomposePropertyValueToOA_Z2F770004(option_5, unwrap(context)) : void 0;
   const perfomers = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(assay, unwrap(graph), unwrap(context)));
   let datamap;
   const v_1 = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(assay, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));

package/dist/ts/ts/Conversion/Basic.d.ts

@@ -17,6 +17,10 @@ export declare class BaseTypes {
     constructor();
 }
 export declare function BaseTypes_$reflection(): TypeInfo;
+/**
+ * Prints a warning if the title is empty, as the ISA RO-Crate profile requires a non-empty name
+ */
+export declare function BaseTypes_warnIfTitleEmpty_Z2FC25A28(entityType: string, identifier: string, title: Option<string>): void;
 export declare function BaseTypes_composeComment_Z13201A7E(comment: Comment$): LDNode;
 export declare function BaseTypes_decomposeComment_Z2F770004(comment: LDNode, context?: LDContext): Comment$;
 export declare function BaseTypes_ontologyTermFromNameAndID_40457300(name?: string, id?: string): OntologyAnnotation;

package/dist/ts/ts/Conversion/Basic.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Basic.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Basic.ts"],"names":[],"mappings":"AACA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAGjF,OAAO,EAAsB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAGnF,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,OAAO,EAAS,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAChE,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AAInE,OAAO,EAAE,IAAI,EAAE,MAAM,iBAAiB,CAAC;AACvC,OAAO,EAA0F,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAC9J,OAAO,EAAuM,sBAAsB,EAAE,MAAM,kCAAkC,CAAC;AAG/Q,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAMzD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,OAAO,EAAE,kBAAkB,EAA0C,MAAM,wBAAwB,CAAC;AAGpG;;GAEG;AACH,qBAAa,SAAS;;CAGrB;AAED,wBAAgB,qBAAqB,IAAI,QAAQ,CAEhD;AAED;;GAEG;AACH,wBAAgB,oCAAoC,CAAC,UAAU,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,IAAI,CAuBxH;AAED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,QAAQ,GAAG,MAAM,CAU5E;AAED,wBAAgB,oCAAoC,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAEnG;AAED,wBAAgB,4CAA4C,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,kBAAkB,CAQ3G;AAED,wBAAgB,+CAA+C,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAOtH;AAED,wBAAgB,qCAAqC,CAAC,IAAI,EAAE,kBAAkB,GAAG,MAAM,CAGtF;AAED,wBAAgB,wCAAwC,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,kBAAkB,CAE9G;AAED,wBAAgB,6CAA6C,CAAC,IAAI,EAAE,kBAAkB,GAAG,MAAM,CAG9F;AAED,wBAAgB,8CAA8C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,kBAAkB,CAEpH;AAED;;GAEG;AACH,wBAAgB,gCAAgC,CAAC,KAAK,EAAE,oBAAoB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAmC9I;AAED,wBAAgB,+BAA+B,CAAC,MAAM,EAAE,sBAAsB,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAgCxG;AAED;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,MAAM,CAI9G;AAED;;GAEG;AACH,wBAAgB,+BAA+B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,MAAM,CAInH;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,MAAM,CAIhH;AAED;;GAEG;AACH,wBAAgB,oCAAoC,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,GAAG,MAAM,CAIxH;AAED,wBAAgB,qCAAqC,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAE5F;AAED,wBAAgB,8BAA8B,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAoC/E;AAED,wBAAgB,iCAAiC,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,IAAI,CAQtF;AAED,wBAAgB,6CAA6C,CAAC,EAAE,EAAE,WAAW,GAAG,MAAM,CAgBrF;AAED,wBAAgB,+CAA+C,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CA4C7H;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CA+BzI;AAED;;GAEG;AACH,wBAAgB,8BAA8B,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAgD1I;AAED,wBAAgB,iDAAiD,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,kBAAkB,CAUrH;AAED;;GAEG;AACH,wBAAgB,uCAAuC,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,oBAAoB,CAmD7G;AAED;;GAEG;AACH,wBAAgB,0CAA0C,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,kBAAkB,EAAE,MAAM,CAAC,kBAAkB,CAAC,EAAE,MAAM,CAAC,kBAAkB,CAAC,CAAC,CAGxK;AAED;;GAEG;AACH,wBAAgB,sCAAsC,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAErI;AAED;;GAEG;AACH,wBAAgB,2CAA2C,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAE1I;AAED;;GAEG;AACH,wBAAgB,wCAAwC,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAEvI;AAED;;GAEG;AACH,wBAAgB,gDAAgD,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAE/I;AAED;;GAEG;AACH,wBAAgB,yCAAyC,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAiBzI;AAED,wBAAgB,0CAA0C,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,CAAC,sBAAsB,EAAE,oBAAoB,CAAC,CAc1I;AAED;;;;;;GAMG;AACH,wBAAgB,4CAA4C,CAAC,EAAE,EAAE,kBAAkB,GAAG,MAAM,CAQ3F;AAED;;;;;;GAMG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,GAAG,kBAAkB,CAahG"}

package/dist/ts/ts/Conversion/Basic.js

@@ -1,5 +1,6 @@
 import { class_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
-import { value, unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { isNullOrWhiteSpace, toConsole, printf, toFail, concat } from '../../node_modules/@fable-org/fable-library-ts/String.js';
+import { unwrap, defaultArg } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Exception } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { LDComment } from '../ROCrate/LDTypes/Comment.js';
 import { Comment$ } from '../Core/Comment.js';
@@ -10,9 +11,8 @@ import { LDDefinedTerm } from '../ROCrate/LDTypes/DefinedTerm.js';
 import { LDPropertyValue } from '../ROCrate/LDTypes/PropertyValue.js';
 import { Data } from '../Core/Data.js';
 import { CompositeCell_Term, CompositeCell_Unitized, CompositeCell_FreeText, CompositeCell_Data } from '../Core/Table/CompositeCell.js';
-import { toFail, printf, concat } from '../../node_modules/@fable-org/fable-library-ts/String.js';
 import { CompositeHeader_Component, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Input, IOType, IOType_FreeText, CompositeHeader_Output } from '../Core/Table/CompositeHeader.js';
-import { DataFile__get_AsString, DataFile_fromString_Z721C83C5 } from '../Core/DataFile.js';
+import { DataFile } from '../Core/DataFile.js';
 import { LDFile } from '../ROCrate/LDTypes/File.js';
 import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
 import { map, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
@@ -30,13 +30,35 @@ class BaseTypes {
 function BaseTypes_$reflection() {
   return class_type("ARCtrl.Conversion.BaseTypes", void 0, BaseTypes);
 }
+function BaseTypes_warnIfTitleEmpty_Z2FC25A28(entityType, identifier, title) {
+  let matchResult = void 0, t_1 = void 0;
+  if (title != null) {
+    if (!isNullOrWhiteSpace(title)) {
+      matchResult = 0;
+      t_1 = title;
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      break;
+    }
+    case 1: {
+      toConsole(printf('Warning: %s "%s" has no title, but RO-Crate requires a non-empty name.'))(entityType)(identifier);
+      break;
+    }
+  }
+}
 function BaseTypes_composeComment_Z13201A7E(comment) {
   let name;
   const matchValue = comment.Name;
   if (matchValue == null) {
     throw new Exception("Comment must have a name");
   } else {
-    name = value(matchValue);
+    name = matchValue;
   }
   return LDComment.create(name, void 0, unwrap(comment.Value));
 }
@@ -47,7 +69,7 @@ function BaseTypes_ontologyTermFromNameAndID_40457300(name, id) {
   if (id == null) {
     return OntologyAnnotation.create(unwrap(name));
   } else {
-    const t = value(id);
+    const t = id;
     return OntologyAnnotation.fromTermAnnotation(t, unwrap(name));
   }
 }
@@ -170,20 +192,21 @@ function BaseTypes_composeFreetextMaterialName(headerFT, name) {
 }
 function BaseTypes_composeFile_6CE21C7D(d, fs) {
   const createFile = () => {
+    let dt = void 0;
     let dataType;
     const option_1 = d.DataType;
-    dataType = option_1 != null ? DataFile__get_AsString(value(option_1)) : void 0;
+    dataType = option_1 != null ? (dt = option_1, dt.AsString) : void 0;
     return LDFile.create(d.NameText, d.NameText, void 0, unwrap(dataType), unwrap(d.Format), unwrap(d.SelectorFormat));
   };
   if (fs == null) {
     return createFile();
   } else {
-    const fs_1 = value(fs);
+    const fs_1 = fs;
     const matchValue = fs_1.Tree.TryGetPath(d.NameText);
     if (matchValue != null) {
-      if (value(matchValue).tag === /* Folder */
+      if (matchValue.tag === /* Folder */
       1) {
-        const fs_2 = value(matchValue);
+        const fs_2 = matchValue;
         const file = createFile();
         file.SchemaType = [LDFile.schemaType, LDDataset.schemaType];
         let subFiles;
@@ -203,9 +226,10 @@ function BaseTypes_composeFile_6CE21C7D(d, fs) {
   }
 }
 function BaseTypes_decomposeFile_Z2F770004(f, context) {
+  let dt = void 0;
   let dataType;
   const option_1 = LDFile.tryGetDisambiguatingDescriptionAsString(f, unwrap(context));
-  dataType = option_1 != null ? DataFile_fromString_Z721C83C5(value(option_1)) : void 0;
+  dataType = option_1 != null ? (dt = option_1, DataFile.fromString(dt)) : void 0;
   const format = LDFile.tryGetEncodingFormatAsString(f, unwrap(context));
   const selectorFormat = LDFile.tryGetUsageInfoAsString(f, unwrap(context));
   return new Data(void 0, LDFile.getNameAsString(f, unwrap(context)), unwrap(dataType), unwrap(format), unwrap(selectorFormat));
@@ -216,13 +240,13 @@ function BaseTypes_composeFragmentDescriptor_Z4C0BEF62(dc) {
     throw new Exception("RO-Crate parsing of DataContext failed: Cannot create a fragment descriptor without a name.");
   }
   const id = LDPropertyValue.genIdFragmentDescriptor(dc.NameText);
-  const patternInput = defaultArg((option_1 = dc.Explication, option_1 != null ? (e = value(option_1), [e.Name, Option_fromValueWithDefault("", e.TermAccessionAndOntobeeUrlIfShort)]) : void 0), [void 0, void 0]);
-  const patternInput_1 = defaultArg((option_4 = dc.Unit, option_4 != null ? (u = value(option_4), [u.Name, Option_fromValueWithDefault("", u.TermAccessionAndOntobeeUrlIfShort)]) : void 0), [void 0, void 0]);
+  const patternInput = defaultArg((option_1 = dc.Explication, option_1 != null ? (e = option_1, [e.Name, Option_fromValueWithDefault("", e.TermAccessionAndOntobeeUrlIfShort)]) : void 0), [void 0, void 0]);
+  const patternInput_1 = defaultArg((option_4 = dc.Unit, option_4 != null ? (u = option_4, [u.Name, Option_fromValueWithDefault("", u.TermAccessionAndOntobeeUrlIfShort)]) : void 0), [void 0, void 0]);
   const disambiguatingDescriptions = Option_fromSeq(ResizeArray_map(toString, dc.Comments));
   const dataFragment = BaseTypes_composeFile_6CE21C7D(dc);
   let pattern;
   const option_7 = dc.ObjectType;
-  pattern = option_7 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(value(option_7)) : void 0;
+  pattern = option_7 != null ? BaseTypes_composeDefinedTerm_ZDED3A0F(option_7) : void 0;
   dataFragment.SetProperty(LDFile.about, new LDRef(id));
   dataFragment.SetOptionalProperty(LDFile.pattern, pattern);
   return LDPropertyValue.createFragmentDescriptor(dc.NameText, unwrap(patternInput[0]), void 0, unwrap(patternInput_1[1]), unwrap(patternInput_1[0]), unwrap(patternInput[1]), unwrap(dc.GeneratedBy), unwrap(dc.Description), unwrap(dc.Label), unwrap(disambiguatingDescriptions), dataFragment);
@@ -233,23 +257,23 @@ function BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, graph, context) {
   if (file == null) {
     throw new Exception("RO-Crate parsing of DataContext failed: Cannot decompose a fragment descriptor without a name.");
   } else {
-    const f = value(file);
+    const f = file;
     name = LDFile.getNameAsString(f, unwrap(context));
   }
   let objectType;
   let option_3;
   const option_1 = file;
   if (option_1 != null) {
-    const f_1 = value(option_1);
+    const f_1 = option_1;
     option_3 = LDFile.tryGetPatternAsDefinedTerm(f_1, unwrap(graph), unwrap(context));
   } else {
     option_3 = void 0;
   }
-  objectType = option_3 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(value(option_3), unwrap(context)) : void 0;
+  objectType = option_3 != null ? BaseTypes_decomposeDefinedTerm_Z2F770004(option_3, unwrap(context)) : void 0;
   let format;
   const option_5 = file;
   if (option_5 != null) {
-    const f_2 = value(option_5);
+    const f_2 = option_5;
     format = LDFile.tryGetEncodingFormatAsString(f_2, unwrap(context));
   } else {
     format = void 0;
@@ -257,16 +281,16 @@ function BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, graph, context) {
   let selectorFormat;
   const option_7 = file;
   if (option_7 != null) {
-    const f_3 = value(option_7);
+    const f_3 = option_7;
     selectorFormat = LDFile.tryGetUsageInfoAsString(f_3, unwrap(context));
   } else {
     selectorFormat = void 0;
   }
-  const explication = BaseTypes_tryOntologyTermFromNameAndID_40457300(unwrap(LDPropertyValue.tryGetValueAsString(fd)), unwrap(LDPropertyValue.tryGetValueReferenceAsString(fd)));
-  const unit = BaseTypes_tryOntologyTermFromNameAndID_40457300(unwrap(LDPropertyValue.tryGetUnitTextAsString(fd)), unwrap(LDPropertyValue.tryGetUnitCodeAsString(fd)));
-  const generatedBy = LDPropertyValue.tryGetMeasurementMethodAsString(fd);
-  const description = LDPropertyValue.tryGetDescriptionAsString(fd);
-  return new DataContext(void 0, name, void 0, unwrap(format), unwrap(selectorFormat), unwrap(explication), unwrap(unit), unwrap(objectType), unwrap(LDPropertyValue.tryGetAlternateNameAsString(fd)), unwrap(description), unwrap(generatedBy), ResizeArray_map((s) => Comment$.fromString(s), LDPropertyValue.getDisambiguatingDescriptionsAsString(fd)));
+  const explication = BaseTypes_tryOntologyTermFromNameAndID_40457300(unwrap(LDPropertyValue.tryGetValueAsString(fd, unwrap(context))), unwrap(LDPropertyValue.tryGetValueReferenceAsString(fd, unwrap(context))));
+  const unit = BaseTypes_tryOntologyTermFromNameAndID_40457300(unwrap(LDPropertyValue.tryGetUnitTextAsString(fd, unwrap(context))), unwrap(LDPropertyValue.tryGetUnitCodeAsString(fd, unwrap(context))));
+  const generatedBy = LDPropertyValue.tryGetMeasurementMethodAsString(fd, unwrap(context));
+  const description = LDPropertyValue.tryGetDescriptionAsString(fd, unwrap(context));
+  return new DataContext(void 0, name, void 0, unwrap(format), unwrap(selectorFormat), unwrap(explication), unwrap(unit), unwrap(objectType), unwrap(LDPropertyValue.tryGetAlternateNameAsString(fd, unwrap(context))), unwrap(description), unwrap(generatedBy), ResizeArray_map((s) => Comment$.fromString(s), LDPropertyValue.getDisambiguatingDescriptionsAsString(fd, unwrap(context))));
 }
 function BaseTypes_composeProcessInput(header, value, fs) {
   if (header.tag === /* Input */
@@ -366,7 +390,7 @@ function BaseTypes_headerOntologyOfPropertyValue_Z2F770004(pv, context) {
   if (matchValue == null) {
     return new OntologyAnnotation(n);
   } else {
-    const nRef = value(matchValue);
+    const nRef = matchValue;
     return OntologyAnnotation.fromTermAnnotation(nRef, n);
   }
 }
@@ -382,19 +406,19 @@ function BaseTypes_cellOfPropertyValue_Z2F770004(pv, context) {
         matchResult = 3;
       } else {
         matchResult = 2;
-        uRef_1 = value(uRef);
+        uRef_1 = uRef;
       }
     } else if (uRef != null) {
       matchResult = 2;
-      uRef_1 = value(uRef);
+      uRef_1 = uRef;
     } else {
       matchResult = 1;
-      u_1 = value(u);
+      u_1 = u;
     }
   } else if (u == null) {
     if (uRef == null) {
       matchResult = 0;
-      vr = value(vRef);
+      vr = vRef;
     } else {
       matchResult = 4;
     }
@@ -418,7 +442,7 @@ function BaseTypes_cellOfPropertyValue_Z2F770004(pv, context) {
 }
 function BaseTypes_decomposePropertyValue_Z2F770004(pv, context) {
   let v = void 0, vRef = void 0, vr = void 0, u = void 0, uRef = void 0, uRef_1 = void 0, u_1 = void 0;
-  return [BaseTypes_headerOntologyOfPropertyValue_Z2F770004(pv, unwrap(context)), (v = LDPropertyValue.tryGetValueAsString(pv, unwrap(context)), vRef = LDPropertyValue.tryGetValueReferenceAsString(pv, unwrap(context)), vRef == null ? v == null ? void 0 : ScalarValue_Name(value(v)) : (vr = value(vRef), ScalarValue_Ontology(OntologyAnnotation.fromTermAnnotation(vr, unwrap(v))))), (u = LDPropertyValue.tryGetUnitTextAsString(pv, unwrap(context)), uRef = LDPropertyValue.tryGetUnitCodeAsString(pv, unwrap(context)), u == null ? uRef == null ? void 0 : (uRef_1 = value(uRef), OntologyAnnotation.fromTermAnnotation(uRef_1, unwrap(u))) : uRef != null ? (uRef_1 = value(uRef), OntologyAnnotation.fromTermAnnotation(uRef_1, unwrap(u))) : (u_1 = value(u), new OntologyAnnotation(u_1)))];
+  return [BaseTypes_headerOntologyOfPropertyValue_Z2F770004(pv, unwrap(context)), (v = LDPropertyValue.tryGetValueAsString(pv, unwrap(context)), vRef = LDPropertyValue.tryGetValueReferenceAsString(pv, unwrap(context)), vRef == null ? v == null ? void 0 : ScalarValue_Name(v) : (vr = vRef, ScalarValue_Ontology(OntologyAnnotation.fromTermAnnotation(vr, unwrap(v))))), (u = LDPropertyValue.tryGetUnitTextAsString(pv, unwrap(context)), uRef = LDPropertyValue.tryGetUnitCodeAsString(pv, unwrap(context)), u == null ? uRef == null ? void 0 : (uRef_1 = uRef, OntologyAnnotation.fromTermAnnotation(uRef_1, unwrap(u))) : uRef != null ? (uRef_1 = uRef, OntologyAnnotation.fromTermAnnotation(uRef_1, unwrap(u))) : (u_1 = u, new OntologyAnnotation(u_1)))];
 }
 function BaseTypes_decomposeComponent_Z2F770004(c, context) {
   return [CompositeHeader_Component(BaseTypes_headerOntologyOfPropertyValue_Z2F770004(c, unwrap(context))), BaseTypes_cellOfPropertyValue_Z2F770004(c, unwrap(context))];
@@ -469,7 +493,7 @@ function BaseTypes_composeTechnologyPlatform_ZDED3A0F(tp) {
 function BaseTypes_decomposeTechnologyPlatform_Z721C83C5(name) {
   const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^(?<value>.+) \\((?<ontology>[^(]*:[^)]*)\\)$", name);
   if (activePatternResult != null) {
-    const r = value(activePatternResult);
+    const r = activePatternResult;
     let oa;
     const tan = r.groups && r.groups.ontology || "";
     oa = OntologyAnnotation.fromTermAnnotation(tan);
@@ -480,4 +504,4 @@ function BaseTypes_decomposeTechnologyPlatform_Z721C83C5(name) {
   }
 }
 
-export { BaseTypes, BaseTypes_$reflection, BaseTypes_cellOfPropertyValue_Z2F770004, BaseTypes_composeCharacteristicValue, BaseTypes_composeComment_Z13201A7E, BaseTypes_composeComponent, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composeFactorValue, BaseTypes_composeFile_6CE21C7D, BaseTypes_composeFragmentDescriptor_Z4C0BEF62, BaseTypes_composeFreetextMaterialName, BaseTypes_composeParameterValue, BaseTypes_composeProcessInput, BaseTypes_composeProcessOutput, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeTechnologyPlatform_ZDED3A0F, BaseTypes_decomposeCharacteristicValue_Z2F770004, BaseTypes_decomposeComment_Z2F770004, BaseTypes_decomposeComponent_Z2F770004, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposeFactorValue_Z2F770004, BaseTypes_decomposeFile_Z2F770004, BaseTypes_decomposeFragmentDescriptor_Z6839B9E8, BaseTypes_decomposeParameterValue_Z2F770004, BaseTypes_decomposeProcessInput_Z2F770004, BaseTypes_decomposeProcessOutput_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposePropertyValue_Z2F770004, BaseTypes_decomposeTechnologyPlatform_Z721C83C5, BaseTypes_headerOntologyOfPropertyValue_Z2F770004, BaseTypes_ontologyTermFromNameAndID_40457300, BaseTypes_termOfHeader_6CAF647B, BaseTypes_tryOntologyTermFromNameAndID_40457300, BaseTypes_valuesOfCell_Z436420FE };
+export { BaseTypes, BaseTypes_$reflection, BaseTypes_cellOfPropertyValue_Z2F770004, BaseTypes_composeCharacteristicValue, BaseTypes_composeComment_Z13201A7E, BaseTypes_composeComponent, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composeFactorValue, BaseTypes_composeFile_6CE21C7D, BaseTypes_composeFragmentDescriptor_Z4C0BEF62, BaseTypes_composeFreetextMaterialName, BaseTypes_composeParameterValue, BaseTypes_composeProcessInput, BaseTypes_composeProcessOutput, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeTechnologyPlatform_ZDED3A0F, BaseTypes_decomposeCharacteristicValue_Z2F770004, BaseTypes_decomposeComment_Z2F770004, BaseTypes_decomposeComponent_Z2F770004, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposeFactorValue_Z2F770004, BaseTypes_decomposeFile_Z2F770004, BaseTypes_decomposeFragmentDescriptor_Z6839B9E8, BaseTypes_decomposeParameterValue_Z2F770004, BaseTypes_decomposeProcessInput_Z2F770004, BaseTypes_decomposeProcessOutput_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposePropertyValue_Z2F770004, BaseTypes_decomposeTechnologyPlatform_Z721C83C5, BaseTypes_headerOntologyOfPropertyValue_Z2F770004, BaseTypes_ontologyTermFromNameAndID_40457300, BaseTypes_termOfHeader_6CAF647B, BaseTypes_tryOntologyTermFromNameAndID_40457300, BaseTypes_valuesOfCell_Z436420FE, BaseTypes_warnIfTitleEmpty_Z2FC25A28 };

package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ColumnIndex.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ColumnIndex.ts"],"names":[],"mappings":"AACA,OAAO,EAAY,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEvE,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAiBhD,eAAO,MAAM,SAAS,gBAAgB,CAAC;AAEvC,eAAO,MAAM,oBAAoB,8CAA8C,CAAC;AAEhF,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAyCvD;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAEzD;AAED,wBAAgB,4CAA4C,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAEjF;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAE5F;AAED,wBAAgB,sDAAsD,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAExG"}
+{"version":3,"file":"ColumnIndex.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ColumnIndex.ts"],"names":[],"mappings":"AACA,OAAO,EAAY,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEvE,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAehD,eAAO,MAAM,SAAS,gBAAgB,CAAC;AAEvC,eAAO,MAAM,oBAAoB,8CAA8C,CAAC;AAEhF,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAyCvD;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAEzD;AAED,wBAAgB,4CAA4C,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAEjF;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAE5F;AAED,wBAAgB,sDAAsD,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAExG"}