@nfdi4plants/arctrl 3.2.2 → 3.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (470) hide show
  1. package/README.md +0 -64
  2. package/dist/ts/index.d.ts +44 -7
  3. package/dist/ts/index.d.ts.map +1 -1
  4. package/dist/ts/index.js +45 -8
  5. package/dist/ts/node_modules/@fable-org/fable-library-ts/Array.js +195 -92
  6. package/dist/ts/node_modules/@fable-org/fable-library-ts/Async.js +251 -30
  7. package/dist/ts/node_modules/@fable-org/fable-library-ts/AsyncBuilder.js +61 -11
  8. package/dist/ts/node_modules/@fable-org/fable-library-ts/BigInt.js +15 -5
  9. package/dist/ts/node_modules/@fable-org/fable-library-ts/BitConverter.js +139 -0
  10. package/dist/ts/node_modules/@fable-org/fable-library-ts/Date.js +1 -1
  11. package/dist/ts/node_modules/@fable-org/fable-library-ts/Decimal.js +68 -12
  12. package/dist/ts/node_modules/@fable-org/fable-library-ts/Double.js +24 -10
  13. package/dist/ts/node_modules/@fable-org/fable-library-ts/FSharp.Core.js +8 -2
  14. package/dist/ts/node_modules/@fable-org/fable-library-ts/Global.js +1 -1
  15. package/dist/ts/node_modules/@fable-org/fable-library-ts/Int32.js +11 -2
  16. package/dist/ts/node_modules/@fable-org/fable-library-ts/List.js +220 -155
  17. package/dist/ts/node_modules/@fable-org/fable-library-ts/Long.js +7 -2
  18. package/dist/ts/node_modules/@fable-org/fable-library-ts/Map.js +46 -39
  19. package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableMap.js +75 -92
  20. package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableSet.js +56 -76
  21. package/dist/ts/node_modules/@fable-org/fable-library-ts/NumberStyles.js +54 -0
  22. package/dist/ts/node_modules/@fable-org/fable-library-ts/Numeric.js +10 -5
  23. package/dist/ts/node_modules/@fable-org/fable-library-ts/Random.js +3 -4
  24. package/dist/ts/node_modules/@fable-org/fable-library-ts/Range.js +4 -3
  25. package/dist/ts/node_modules/@fable-org/fable-library-ts/RegExp.js +2 -2
  26. package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq.js +128 -64
  27. package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq2.js +4 -8
  28. package/dist/ts/node_modules/@fable-org/fable-library-ts/Set.js +64 -57
  29. package/dist/ts/node_modules/@fable-org/fable-library-ts/String.js +68 -21
  30. package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Collections.Generic.js +3 -2
  31. package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Text.js +2 -2
  32. package/dist/ts/node_modules/@fable-org/fable-library-ts/System.js +5 -5
  33. package/dist/ts/node_modules/@fable-org/fable-library-ts/Types.js +23 -12
  34. package/dist/ts/node_modules/@fable-org/fable-library-ts/Util.js +88 -49
  35. package/dist/ts/node_modules/@fable-org/fable-library-ts/lib/big.js +121 -74
  36. package/dist/ts/ts/ARC.d.ts +22 -5
  37. package/dist/ts/ts/ARC.d.ts.map +1 -1
  38. package/dist/ts/ts/ARC.js +282 -185
  39. package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts +0 -2
  40. package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts.map +1 -1
  41. package/dist/ts/ts/CWL/CWLKnownFieldNames.js +1 -7
  42. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts +46 -27
  43. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map +1 -1
  44. package/dist/ts/ts/CWL/CWLProcessingUnit.js +312 -123
  45. package/dist/ts/ts/CWL/CWLTypes.d.ts +481 -148
  46. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
  47. package/dist/ts/ts/CWL/CWLTypes.js +887 -201
  48. package/dist/ts/ts/CWL/Decode.d.ts +480 -211
  49. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
  50. package/dist/ts/ts/CWL/Decode.js +3614 -2462
  51. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +9 -0
  52. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -1
  53. package/dist/ts/ts/CWL/DynamicObjHelpers.js +55 -5
  54. package/dist/ts/ts/CWL/Encode.d.ts +225 -85
  55. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
  56. package/dist/ts/ts/CWL/Encode.js +1858 -970
  57. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +42 -28
  58. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
  59. package/dist/ts/ts/CWL/ExpressionToolDescription.js +34 -13
  60. package/dist/ts/ts/CWL/HashHelpers.d.ts +38 -0
  61. package/dist/ts/ts/CWL/HashHelpers.d.ts.map +1 -1
  62. package/dist/ts/ts/CWL/HashHelpers.js +255 -6
  63. package/dist/ts/ts/CWL/Inputs.d.ts +127 -56
  64. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
  65. package/dist/ts/ts/CWL/Inputs.js +107 -16
  66. package/dist/ts/ts/CWL/OperationDescription.d.ts +41 -21
  67. package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
  68. package/dist/ts/ts/CWL/OperationDescription.js +35 -9
  69. package/dist/ts/ts/CWL/Outputs.d.ts +93 -42
  70. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
  71. package/dist/ts/ts/CWL/Outputs.js +101 -19
  72. package/dist/ts/ts/CWL/ParameterReference.d.ts +11 -8
  73. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
  74. package/dist/ts/ts/CWL/ParameterReference.js +18 -25
  75. package/dist/ts/ts/CWL/ParameterValue.d.ts +15 -1
  76. package/dist/ts/ts/CWL/ParameterValue.d.ts.map +1 -1
  77. package/dist/ts/ts/CWL/ParameterValue.js +59 -35
  78. package/dist/ts/ts/CWL/Requirements.d.ts +240 -98
  79. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
  80. package/dist/ts/ts/CWL/Requirements.js +462 -89
  81. package/dist/ts/ts/CWL/ScalarQuoting.d.ts +51 -0
  82. package/dist/ts/ts/CWL/ScalarQuoting.d.ts.map +1 -0
  83. package/dist/ts/ts/CWL/ScalarQuoting.js +250 -0
  84. package/dist/ts/ts/CWL/ToolDescription.d.ts +63 -50
  85. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
  86. package/dist/ts/ts/CWL/ToolDescription.js +34 -13
  87. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +45 -26
  88. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
  89. package/dist/ts/ts/CWL/WorkflowDescription.js +38 -11
  90. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +248 -65
  91. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
  92. package/dist/ts/ts/CWL/WorkflowSteps.js +413 -43
  93. package/dist/ts/ts/CWLRunResolver.d.ts +30 -12
  94. package/dist/ts/ts/CWLRunResolver.d.ts.map +1 -1
  95. package/dist/ts/ts/CWLRunResolver.js +221 -86
  96. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  97. package/dist/ts/ts/Contract/ARC.js +13 -14
  98. package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -1
  99. package/dist/ts/ts/Contract/ArcAssay.js +4 -4
  100. package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -1
  101. package/dist/ts/ts/Contract/ArcInvestigation.js +3 -4
  102. package/dist/ts/ts/Contract/ArcRun.d.ts +12 -2
  103. package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -1
  104. package/dist/ts/ts/Contract/ArcRun.js +47 -20
  105. package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -1
  106. package/dist/ts/ts/Contract/ArcStudy.js +4 -4
  107. package/dist/ts/ts/Contract/ArcWorkflow.d.ts +18 -4
  108. package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -1
  109. package/dist/ts/ts/Contract/ArcWorkflow.js +55 -17
  110. package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -1
  111. package/dist/ts/ts/Contract/Datamap.js +16 -17
  112. package/dist/ts/ts/Contract/Git.js +1 -1
  113. package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -1
  114. package/dist/ts/ts/Contract/ValidationPackagesConfig.js +4 -5
  115. package/dist/ts/ts/ContractIO/ContractIO.d.ts +7 -0
  116. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  117. package/dist/ts/ts/ContractIO/ContractIO.js +95 -18
  118. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +1 -0
  119. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -1
  120. package/dist/ts/ts/ContractIO/FileSystemHelper.js +12 -5
  121. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
  122. package/dist/ts/ts/Conversion/Assay.js +26 -18
  123. package/dist/ts/ts/Conversion/Basic.d.ts +4 -0
  124. package/dist/ts/ts/Conversion/Basic.d.ts.map +1 -1
  125. package/dist/ts/ts/Conversion/Basic.js +55 -31
  126. package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -1
  127. package/dist/ts/ts/Conversion/ColumnIndex.js +2 -4
  128. package/dist/ts/ts/Conversion/DateTime.d.ts.map +1 -1
  129. package/dist/ts/ts/Conversion/DateTime.js +1 -2
  130. package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -1
  131. package/dist/ts/ts/Conversion/Investigation.js +15 -14
  132. package/dist/ts/ts/Conversion/Person.js +11 -11
  133. package/dist/ts/ts/Conversion/Process.d.ts +4 -2
  134. package/dist/ts/ts/Conversion/Process.d.ts.map +1 -1
  135. package/dist/ts/ts/Conversion/Process.js +134 -97
  136. package/dist/ts/ts/Conversion/Run.d.ts +36 -6
  137. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
  138. package/dist/ts/ts/Conversion/Run.js +320 -136
  139. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
  140. package/dist/ts/ts/Conversion/ScholarlyArticle.js +75 -9
  141. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
  142. package/dist/ts/ts/Conversion/Study.js +23 -12
  143. package/dist/ts/ts/Conversion/Table.d.ts +3 -2
  144. package/dist/ts/ts/Conversion/Table.d.ts.map +1 -1
  145. package/dist/ts/ts/Conversion/Table.js +8 -8
  146. package/dist/ts/ts/Conversion/Workflow.d.ts +48 -9
  147. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
  148. package/dist/ts/ts/Conversion/Workflow.js +655 -163
  149. package/dist/ts/ts/Conversion.js +6 -6
  150. package/dist/ts/ts/Core/ArcTypes.d.ts +73 -28
  151. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  152. package/dist/ts/ts/Core/ArcTypes.js +219 -129
  153. package/dist/ts/ts/Core/Comment.d.ts.map +1 -1
  154. package/dist/ts/ts/Core/Comment.js +2 -2
  155. package/dist/ts/ts/Core/CommentList.js +7 -7
  156. package/dist/ts/ts/Core/Conversion.d.ts.map +1 -1
  157. package/dist/ts/ts/Core/Conversion.js +68 -59
  158. package/dist/ts/ts/Core/Data.d.ts +6 -0
  159. package/dist/ts/ts/Core/Data.d.ts.map +1 -1
  160. package/dist/ts/ts/Core/Data.js +32 -12
  161. package/dist/ts/ts/Core/DataContext.d.ts +1 -1
  162. package/dist/ts/ts/Core/DataContext.d.ts.map +1 -1
  163. package/dist/ts/ts/Core/DataContext.js +4 -4
  164. package/dist/ts/ts/Core/DataFile.d.ts +11 -8
  165. package/dist/ts/ts/Core/DataFile.d.ts.map +1 -1
  166. package/dist/ts/ts/Core/DataFile.js +55 -61
  167. package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
  168. package/dist/ts/ts/Core/Datamap.js +2 -3
  169. package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -1
  170. package/dist/ts/ts/Core/Helper/Collections.js +2 -4
  171. package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -1
  172. package/dist/ts/ts/Core/Helper/Identifier.js +12 -15
  173. package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -1
  174. package/dist/ts/ts/Core/Helper/ORCID.js +2 -3
  175. package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -1
  176. package/dist/ts/ts/Core/Helper/Regex.js +52 -53
  177. package/dist/ts/ts/Core/Helper/SemVer.d.ts +13 -3
  178. package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -1
  179. package/dist/ts/ts/Core/Helper/SemVer.js +96 -6
  180. package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -1
  181. package/dist/ts/ts/Core/Helper/Url.js +1 -1
  182. package/dist/ts/ts/Core/OntologyAnnotation.js +22 -22
  183. package/dist/ts/ts/Core/Person.d.ts.map +1 -1
  184. package/dist/ts/ts/Core/Person.js +2 -2
  185. package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -1
  186. package/dist/ts/ts/Core/Process/ColumnIndex.js +10 -12
  187. package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -1
  188. package/dist/ts/ts/Core/Process/Component.js +22 -22
  189. package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -1
  190. package/dist/ts/ts/Core/Process/Factor.js +7 -7
  191. package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -1
  192. package/dist/ts/ts/Core/Process/FactorValue.js +15 -15
  193. package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -1
  194. package/dist/ts/ts/Core/Process/Material.js +2 -2
  195. package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -1
  196. package/dist/ts/ts/Core/Process/MaterialAttribute.js +6 -6
  197. package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -1
  198. package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +16 -16
  199. package/dist/ts/ts/Core/Process/Process.js +21 -21
  200. package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -1
  201. package/dist/ts/ts/Core/Process/ProcessInput.js +2 -2
  202. package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -1
  203. package/dist/ts/ts/Core/Process/ProcessOutput.js +2 -2
  204. package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -1
  205. package/dist/ts/ts/Core/Process/ProcessParameterValue.js +17 -17
  206. package/dist/ts/ts/Core/Process/ProcessSequence.js +4 -4
  207. package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -1
  208. package/dist/ts/ts/Core/Process/Protocol.js +9 -9
  209. package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -1
  210. package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -6
  211. package/dist/ts/ts/Core/Publication.d.ts.map +1 -1
  212. package/dist/ts/ts/Core/Publication.js +3 -3
  213. package/dist/ts/ts/Core/ScalarValue.d.ts.map +1 -1
  214. package/dist/ts/ts/Core/ScalarValue.js +9 -13
  215. package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -1
  216. package/dist/ts/ts/Core/Table/ArcTable.js +18 -18
  217. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +1 -1
  218. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
  219. package/dist/ts/ts/Core/Table/ArcTableAux.js +59 -70
  220. package/dist/ts/ts/Core/Table/ArcTables.js +16 -16
  221. package/dist/ts/ts/Core/Table/CompositeCell.d.ts +4 -0
  222. package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -1
  223. package/dist/ts/ts/Core/Table/CompositeCell.js +39 -2
  224. package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -1
  225. package/dist/ts/ts/Core/Table/CompositeHeader.js +5 -6
  226. package/dist/ts/ts/Core/Templates.d.ts.map +1 -1
  227. package/dist/ts/ts/Core/Templates.js +2 -2
  228. package/dist/ts/ts/FileSystem/Path.d.ts +13 -2
  229. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
  230. package/dist/ts/ts/FileSystem/Path.js +37 -19
  231. package/dist/ts/ts/Json/Assay.js +22 -22
  232. package/dist/ts/ts/Json/Comment.js +9 -9
  233. package/dist/ts/ts/Json/Data.d.ts.map +1 -1
  234. package/dist/ts/ts/Json/Data.js +11 -11
  235. package/dist/ts/ts/Json/Datamap/DataContext.js +2 -2
  236. package/dist/ts/ts/Json/Decode.d.ts.map +1 -1
  237. package/dist/ts/ts/Json/Decode.js +3 -5
  238. package/dist/ts/ts/Json/Encode.js +2 -2
  239. package/dist/ts/ts/Json/Investigation.d.ts.map +1 -1
  240. package/dist/ts/ts/Json/Investigation.js +20 -20
  241. package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -1
  242. package/dist/ts/ts/Json/OntologyAnnotation.js +18 -18
  243. package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -1
  244. package/dist/ts/ts/Json/OntologySourceReference.js +9 -9
  245. package/dist/ts/ts/Json/Person.d.ts.map +1 -1
  246. package/dist/ts/ts/Json/Person.js +20 -20
  247. package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -1
  248. package/dist/ts/ts/Json/Process/AssayMaterials.js +1 -2
  249. package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -1
  250. package/dist/ts/ts/Json/Process/Component.js +5 -6
  251. package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -1
  252. package/dist/ts/ts/Json/Process/Factor.js +7 -7
  253. package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -1
  254. package/dist/ts/ts/Json/Process/FactorValue.js +2 -3
  255. package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -1
  256. package/dist/ts/ts/Json/Process/Material.js +9 -10
  257. package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -1
  258. package/dist/ts/ts/Json/Process/MaterialAttribute.js +5 -6
  259. package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -1
  260. package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +2 -3
  261. package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -1
  262. package/dist/ts/ts/Json/Process/Process.js +8 -9
  263. package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -1
  264. package/dist/ts/ts/Json/Process/ProcessParameterValue.js +1 -2
  265. package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -1
  266. package/dist/ts/ts/Json/Process/Protocol.js +17 -17
  267. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -1
  268. package/dist/ts/ts/Json/Process/ProtocolParameter.js +6 -6
  269. package/dist/ts/ts/Json/Process/Sample.d.ts.map +1 -1
  270. package/dist/ts/ts/Json/Process/Sample.js +9 -9
  271. package/dist/ts/ts/Json/Process/Source.d.ts.map +1 -1
  272. package/dist/ts/ts/Json/Process/Source.js +10 -11
  273. package/dist/ts/ts/Json/Process/StudyMaterials.d.ts.map +1 -1
  274. package/dist/ts/ts/Json/Process/StudyMaterials.js +1 -2
  275. package/dist/ts/ts/Json/PropertyValue.d.ts.map +1 -1
  276. package/dist/ts/ts/Json/PropertyValue.js +24 -24
  277. package/dist/ts/ts/Json/Publication.d.ts.map +1 -1
  278. package/dist/ts/ts/Json/Publication.js +10 -10
  279. package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -2
  280. package/dist/ts/ts/Json/ROCrate/LDGraph.js +2 -2
  281. package/dist/ts/ts/Json/ROCrate/LDNode.js +5 -5
  282. package/dist/ts/ts/Json/Run.js +9 -9
  283. package/dist/ts/ts/Json/StringTable.d.ts.map +1 -1
  284. package/dist/ts/ts/Json/StringTable.js +4 -7
  285. package/dist/ts/ts/Json/Study.js +20 -20
  286. package/dist/ts/ts/Json/Table/CellTable.js +1 -2
  287. package/dist/ts/ts/Json/Table/OATable.js +1 -2
  288. package/dist/ts/ts/Json/Workflow.js +9 -9
  289. package/dist/ts/ts/Json.d.ts +121 -1
  290. package/dist/ts/ts/Json.d.ts.map +1 -1
  291. package/dist/ts/ts/Json.js +310 -2
  292. package/dist/ts/ts/JsonIO/Comment.d.ts +15 -0
  293. package/dist/ts/ts/JsonIO/Comment.d.ts.map +1 -0
  294. package/dist/ts/ts/JsonIO/Comment.js +67 -0
  295. package/dist/ts/ts/JsonIO/Data.d.ts +9 -0
  296. package/dist/ts/ts/JsonIO/Data.d.ts.map +1 -0
  297. package/dist/ts/ts/JsonIO/Data.js +49 -0
  298. package/dist/ts/ts/JsonIO/DataFile.d.ts +9 -0
  299. package/dist/ts/ts/JsonIO/DataFile.d.ts.map +1 -0
  300. package/dist/ts/ts/JsonIO/DataFile.js +48 -0
  301. package/dist/ts/ts/JsonIO/LDObject.d.ts +6 -0
  302. package/dist/ts/ts/JsonIO/LDObject.d.ts.map +1 -1
  303. package/dist/ts/ts/JsonIO/LDObject.js +173 -17
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  306. package/dist/ts/ts/JsonIO/OntologySourceReference.js +67 -0
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  323. package/dist/ts/ts/License.js +6 -6
  324. package/dist/ts/ts/ROCrate/LDContext.d.ts.map +1 -1
  325. package/dist/ts/ts/ROCrate/LDContext.js +31 -39
  326. package/dist/ts/ts/ROCrate/LDObject.d.ts.map +1 -1
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  329. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js +3 -3
  330. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.js +2 -2
  331. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.js +5 -5
  332. package/dist/ts/ts/ROCrate/LDTypes/CreativeWork.d.ts +1 -0
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  334. package/dist/ts/ts/ROCrate/LDTypes/CreativeWork.js +3 -0
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  336. package/dist/ts/ts/ROCrate/LDTypes/Dataset.js +22 -17
  337. package/dist/ts/ts/ROCrate/LDTypes/DefinedTerm.js +2 -2
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  339. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.js +2 -2
  340. package/dist/ts/ts/ROCrate/LDTypes/LabProcess.js +9 -9
  341. package/dist/ts/ts/ROCrate/LDTypes/LabProtocol.js +4 -4
  342. package/dist/ts/ts/ROCrate/LDTypes/Organization.js +1 -1
  343. package/dist/ts/ts/ROCrate/LDTypes/Person.js +7 -7
  344. package/dist/ts/ts/ROCrate/LDTypes/PostalAddress.js +1 -1
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  346. package/dist/ts/ts/ROCrate/LDTypes/PropertyValue.js +45 -48
  347. package/dist/ts/ts/ROCrate/LDTypes/Sample.js +3 -3
  348. package/dist/ts/ts/ROCrate/LDTypes/ScholarlyArticle.js +4 -4
  349. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.js +3 -3
  350. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.js +3 -3
  351. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.js +2 -2
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  354. package/dist/ts/ts/ROCrateIO.js +49 -38
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  356. package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +9 -10
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  358. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +7 -7
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  367. package/dist/ts/ts/Spreadsheet/ArcRun.js +5 -6
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  391. package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +2 -4
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@@ -1,11 +1,20 @@
1
1
  import { Big } from './lib/big.js';
2
2
  import { symbol } from './Numeric.js';
3
- import { FSharpRef } from './Types.js';
4
3
  import { combineHashCodes, Exception } from './Util.js';
4
+ import { splitNumber, NumberStyles } from './NumberStyles.js';
5
+ import { OverflowException_$ctor_Z721C83C5, ArgumentNullException_$ctor_Z721C83C5, FormatException_$ctor_Z721C83C5 } from './System.js';
5
6
  import { toInt8 as toInt8$1, fromDecimal, toUInt8 as toUInt8$1, toInt16 as toInt16$1, toUInt16 as toUInt16$1, toInt32 as toInt32$1, toUInt32 as toUInt32$1, toInt64 as toInt64$1, toUInt64 as toUInt64$1, toInt128 as toInt128$1, toUInt128 as toUInt128$1, toNativeInt as toNativeInt$1, toUNativeInt as toUNativeInt$1 } from './BigInt.js';
6
7
 
7
8
  Big.prototype.GetHashCode = function() {
8
- return combineHashCodes([this.s, this.e].concat(this.c));
9
+ const digits = this.c;
10
+ if (digits[0] === 0) {
11
+ return combineHashCodes([1, 0, 0]);
12
+ }
13
+ let end = digits.length;
14
+ while (digits[end - 1] === 0) {
15
+ end--;
16
+ }
17
+ return combineHashCodes([this.s, this.e].concat(digits.slice(0, end)));
9
18
  };
10
19
  Big.prototype.Equals = function(x) {
11
20
  return !this.cmp(x);
@@ -41,7 +50,7 @@ function sign(x) {
41
50
  return x.lt(get_Zero) ? -1 : x.gt(get_Zero) ? 1 : 0;
42
51
  }
43
52
  function max(x, y) {
44
- return x.gt(y) ? x : y;
53
+ return x.lt(y) ? y : x;
45
54
  }
46
55
  function min(x, y) {
47
56
  return x.lt(y) ? x : y;
@@ -121,21 +130,43 @@ const negate = op_UnaryNegation;
121
130
  function toString(x) {
122
131
  return x.toString();
123
132
  }
124
- function tryParse(str, defValue) {
133
+ function parseWithStyle(str, style) {
134
+ const parts = splitNumber(str, style);
135
+ if (parts === void 0) {
136
+ return void 0;
137
+ }
138
+ let d;
139
+ try {
140
+ d = new Big(parts.digits);
141
+ } catch {
142
+ throw OverflowException_$ctor_Z721C83C5(OVERFLOW);
143
+ }
144
+ if (parts.negative) {
145
+ d.s = -1;
146
+ }
147
+ return d;
148
+ }
149
+ function tryParse(str, style, defValue) {
125
150
  try {
126
- defValue.contents = new Big(str.trim());
151
+ const d = parseWithStyle(str, style);
152
+ if (d === void 0) {
153
+ return false;
154
+ }
155
+ defValue.contents = d;
127
156
  return true;
128
157
  } catch {
129
158
  return false;
130
159
  }
131
160
  }
132
- function parse(str) {
133
- const defValue = new FSharpRef(get_Zero);
134
- if (tryParse(str, defValue)) {
135
- return defValue.contents;
136
- } else {
137
- throw new Exception(`The input string ${str} was not in a correct format.`);
161
+ function parse(str, style = NumberStyles.Number) {
162
+ if (str == null) {
163
+ throw ArgumentNullException_$ctor_Z721C83C5("s");
138
164
  }
165
+ const d = parseWithStyle(str, style);
166
+ if (d === void 0) {
167
+ throw FormatException_$ctor_Z721C83C5(`The input string '${str}' was not in a correct format.`);
168
+ }
169
+ return d;
139
170
  }
140
171
  function toNumber(x) {
141
172
  return +x;
@@ -237,6 +268,31 @@ function getInt32Bits(hexDigits, offset) {
237
268
  }
238
269
  return bits;
239
270
  }
271
+ const OVERFLOW = "Value was either too large or too small for a Decimal.";
272
+ const MAX_DOUBLE = 2 ** 96;
273
+ function fromFloat(n, significantDigits) {
274
+ if (!isFinite(n) || Math.abs(n) >= MAX_DOUBLE) {
275
+ throw new Exception(OVERFLOW);
276
+ }
277
+ const exact = Math.abs(n) >= 1e21 ? BigInt(n).toString() : n.toFixed(100);
278
+ const d = new Big(exact).prec(significantDigits, 2);
279
+ const digits = d.c;
280
+ let end = digits.length;
281
+ while (end > 1 && digits[end - 1] === 0) {
282
+ end--;
283
+ }
284
+ d.c = digits.slice(0, end);
285
+ if (d.c[0] === 0) {
286
+ d.e = 0;
287
+ }
288
+ return d;
289
+ }
290
+ function fromFloat64(n) {
291
+ return fromFloat(n, 15);
292
+ }
293
+ function fromFloat32(n) {
294
+ return fromFloat(n, 7);
295
+ }
240
296
  function fromIntArray(bits) {
241
297
  return fromInts(bits[0], bits[1], bits[2], bits[3]);
242
298
  }
@@ -276,4 +332,4 @@ function getBits(d) {
276
332
  return [low, mid, high, signExp];
277
333
  }
278
334
 
279
- export { abs, add, ceiling, clamp, compare, Big as default, divide, equals, floor, fromIntArray, fromInts, fromParts, getBits, get_MaxValue, get_MinValue, get_MinusOne, get_One, get_Zero, max, maxMagnitude, min, minMagnitude, multiply, negate, op_Addition, op_Division, op_Modulus, op_Multiply, op_Subtraction, op_UnaryNegation, op_UnaryPlus, parse, pow, remainder, round, sign, sqrt, subtract, toChar, toFloat16, toFloat32, toFloat64, toInt128, toInt16, toInt32, toInt64, toInt8, toNativeInt, toNumber, toString, toUInt128, toUInt16, toUInt32, toUInt64, toUInt8, toUNativeInt, truncate, tryParse };
335
+ export { abs, add, ceiling, clamp, compare, Big as default, divide, equals, floor, fromFloat32, fromFloat64, fromIntArray, fromInts, fromParts, getBits, get_MaxValue, get_MinValue, get_MinusOne, get_One, get_Zero, max, maxMagnitude, min, minMagnitude, multiply, negate, op_Addition, op_Division, op_Modulus, op_Multiply, op_Subtraction, op_UnaryNegation, op_UnaryPlus, parse, pow, remainder, round, sign, sqrt, subtract, toChar, toFloat16, toFloat32, toFloat64, toInt128, toInt16, toInt32, toInt64, toInt8, toNativeInt, toNumber, toString, toUInt128, toUInt16, toUInt32, toUInt64, toUInt8, toUNativeInt, truncate, tryParse };
@@ -1,24 +1,38 @@
1
1
  import { FSharpRef } from './Types.js';
2
- import { Exception } from './Util.js';
2
+ import { ArgumentNullException_$ctor_Z721C83C5, FormatException_$ctor_Z721C83C5 } from './System.js';
3
+ import { NumberStyles, splitNumber } from './NumberStyles.js';
3
4
 
4
- function tryParse(str, defValue) {
5
- if (str != null && /\S/.test(str)) {
6
- const v = +str.replace("_", "");
7
- if (!Number.isNaN(v)) {
8
- defValue.contents = v;
5
+ const symbolRegex = /^[\t-\r \u0085\u00a0\u1680\u2000-\u200a\u2028\u2029\u202f\u205f\u3000]*(?:[+-]?nan|([+-]?)infinity)[\t-\r \u0085\u00a0\u1680\u2000-\u200a\u2028\u2029\u202f\u205f\u3000]*$/i;
6
+ const defaultStyle = NumberStyles.Float | NumberStyles.AllowThousands;
7
+ function tryParse(str, style, defValue) {
8
+ if (str != null) {
9
+ const parts = splitNumber(str, style);
10
+ if (parts !== void 0) {
11
+ const value = Number.parseFloat(parts.digits);
12
+ defValue.contents = parts.negative ? -value : value;
13
+ return true;
14
+ }
15
+ const symbol = symbolRegex.exec(str);
16
+ if (symbol != null) {
17
+ defValue.contents = symbol[1] == null ? NaN : symbol[1] === "-" ? -Infinity : Infinity;
9
18
  return true;
10
19
  }
11
20
  }
12
21
  return false;
13
22
  }
14
- function parse(str) {
23
+ function parse(str, style = defaultStyle) {
15
24
  const defValue = new FSharpRef(0);
16
- if (tryParse(str, defValue)) {
25
+ if (tryParse(str, style, defValue)) {
17
26
  return defValue.contents;
27
+ } else if (str == null) {
28
+ throw ArgumentNullException_$ctor_Z721C83C5("s");
18
29
  } else {
19
- throw new Exception(`The input string ${str} was not in a correct format.`);
30
+ throw FormatException_$ctor_Z721C83C5(`The input string '${str}' was not in a correct format.`);
20
31
  }
21
32
  }
33
+ function parseIgnoringUnderscores(str) {
34
+ return parse(str == null ? str : str.replace(/_/g, ""), NumberStyles.Float);
35
+ }
22
36
  function isPositiveInfinity(x) {
23
37
  return x === Number.POSITIVE_INFINITY;
24
38
  }
@@ -50,4 +64,4 @@ function clamp(x, min2, max2) {
50
64
  return x < min2 ? min2 : x > max2 ? max2 : x;
51
65
  }
52
66
 
53
- export { clamp, isInfinity, isNegativeInfinity, isPositiveInfinity, max, maxMagnitude, min, minMagnitude, parse, tryParse };
67
+ export { clamp, isInfinity, isNegativeInfinity, isPositiveInfinity, max, maxMagnitude, min, minMagnitude, parse, parseIgnoringUnderscores, tryParse };
@@ -1,7 +1,7 @@
1
1
  import { structuralHash, equals, Exception, defaultOf, disposeSafe } from './Util.js';
2
2
  import { ComparisonIdentity_Structural, HashIdentity_Structural } from './FSharp.Collections.js';
3
3
  import { nonNullValue } from './Option.js';
4
- import { ArgumentNullException_$ctor_Z721C83C5, NullReferenceException_$ctor } from './System.js';
4
+ import { ArgumentNullException_$ctor_Z721C83C5, ArgumentException_$ctor_Z384F8060, InvalidOperationException_$ctor_Z721C83C5, NullReferenceException_$ctor } from './System.js';
5
5
  import { FSharpChoice$2_Choice1Of2, FSharpChoice$2_Choice2Of2 } from './Choice.js';
6
6
  import { StringBuilder__Append_Z721C83C5 } from './System.Text.js';
7
7
 
@@ -42,6 +42,12 @@ function Operators_FailurePattern(exn) {
42
42
  function Operators_NullArg(argumentName) {
43
43
  throw ArgumentNullException_$ctor_Z721C83C5(argumentName);
44
44
  }
45
+ function Operators_InvalidArg(argumentName, message) {
46
+ throw ArgumentException_$ctor_Z384F8060(message, argumentName);
47
+ }
48
+ function Operators_InvalidOp(message) {
49
+ throw InvalidOperationException_$ctor_Z721C83C5(message);
50
+ }
45
51
  function Operators_Using(resource, action) {
46
52
  try {
47
53
  return action(resource);
@@ -145,4 +151,4 @@ function PrintfModule_PrintFormatToStringBuilder(builder, format) {
145
151
  }, builder, format);
146
152
  }
147
153
 
148
- export { ExtraTopLevelOperators_LazyPattern, LanguagePrimitives_FastGenericComparer, LanguagePrimitives_FastGenericComparerFromTable, LanguagePrimitives_FastGenericEqualityComparer, LanguagePrimitives_FastGenericEqualityComparerFromTable, LanguagePrimitives_GenericEqualityComparer, LanguagePrimitives_GenericEqualityERComparer, Operators_Failure, Operators_FailurePattern, Operators_IsNotNull, Operators_IsNull, Operators_IsNullV, Operators_Lock, Operators_NonNull, Operators_NonNullQuickPattern, Operators_NonNullQuickValuePattern, Operators_NonNullV, Operators_NullArg, Operators_NullArgCheck, Operators_NullMatchPattern, Operators_NullV, Operators_NullValueMatchPattern, Operators_Using, Operators_WithNull, Operators_WithNullV, PrintfModule_PrintFormatToStringBuilder, PrintfModule_PrintFormatToStringBuilderThen };
154
+ export { ExtraTopLevelOperators_LazyPattern, LanguagePrimitives_FastGenericComparer, LanguagePrimitives_FastGenericComparerFromTable, LanguagePrimitives_FastGenericEqualityComparer, LanguagePrimitives_FastGenericEqualityComparerFromTable, LanguagePrimitives_GenericEqualityComparer, LanguagePrimitives_GenericEqualityERComparer, Operators_Failure, Operators_FailurePattern, Operators_InvalidArg, Operators_InvalidOp, Operators_IsNotNull, Operators_IsNull, Operators_IsNullV, Operators_Lock, Operators_NonNull, Operators_NonNullQuickPattern, Operators_NonNullQuickValuePattern, Operators_NonNullV, Operators_NullArg, Operators_NullArgCheck, Operators_NullMatchPattern, Operators_NullV, Operators_NullValueMatchPattern, Operators_Using, Operators_WithNull, Operators_WithNullV, PrintfModule_PrintFormatToStringBuilder, PrintfModule_PrintFormatToStringBuilderThen };
@@ -1,5 +1,5 @@
1
1
  const SR_indexOutOfBounds = "The index was outside the range of elements in the collection.";
2
- const SR_inputWasEmpty = "Collection was empty.";
2
+ const SR_inputWasEmpty = "The input list was empty.";
3
3
  const SR_inputMustBeNonNegative = "The input must be non-negative.";
4
4
  const SR_inputSequenceEmpty = "The input sequence was empty.";
5
5
  const SR_inputSequenceTooLong = "The input sequence contains more than one element.";
@@ -1,4 +1,5 @@
1
1
  import { Exception } from './Util.js';
2
+ import { OverflowException_$ctor_Z721C83C5, ArgumentNullException_$ctor_Z721C83C5, FormatException_$ctor_Z721C83C5 } from './System.js';
2
3
 
3
4
  const NumberStyles = {
4
5
  // None: 0x00000000,
@@ -117,7 +118,14 @@ function isValid(str, style, radix) {
117
118
  }
118
119
  return null;
119
120
  }
121
+ function parseOverflow(unsigned, bitsize) {
122
+ const type = bitsize === 8 ? unsigned ? "an unsigned byte" : "a signed byte" : (unsigned ? "a UInt" : "an Int") + bitsize;
123
+ return OverflowException_$ctor_Z721C83C5(`Value was either too large or too small for ${type}.`);
124
+ }
120
125
  function parse(str, style, unsigned, bitsize, radix) {
126
+ if (str == null) {
127
+ throw ArgumentNullException_$ctor_Z721C83C5("s");
128
+ }
121
129
  const res = isValid(str, style, radix);
122
130
  if (res != null) {
123
131
  let v = Number.parseInt(res.sign + res.digits, res.radix);
@@ -130,9 +138,10 @@ function parse(str, style, unsigned, bitsize, radix) {
130
138
  if (v >= min && v <= max) {
131
139
  return v;
132
140
  }
141
+ throw parseOverflow(unsigned, bitsize);
133
142
  }
134
143
  }
135
- throw new Exception(`The input string ${str} was not in a correct format.`);
144
+ throw FormatException_$ctor_Z721C83C5(`The input string '${str}' was not in a correct format.`);
136
145
  }
137
146
  function tryParse(str, style, unsigned, bitsize, defValue) {
138
147
  try {
@@ -162,4 +171,4 @@ function divRem(x, y, out) {
162
171
  }
163
172
  }
164
173
 
165
- export { NumberStyles, divRem, getPrefix, getRadix, isValid, op_UnaryNegation_Int16, op_UnaryNegation_Int32, op_UnaryNegation_Int8, parse, tryParse };
174
+ export { NumberStyles, divRem, getPrefix, getRadix, isValid, op_UnaryNegation_Int16, op_UnaryNegation_Int32, op_UnaryNegation_Int8, parse, parseOverflow, tryParse };