@nfdi4plants/arctrl 3.2.2 → 3.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +0 -64
- package/dist/ts/index.d.ts +44 -7
- package/dist/ts/index.d.ts.map +1 -1
- package/dist/ts/index.js +45 -8
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Array.js +195 -92
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Async.js +251 -30
- package/dist/ts/node_modules/@fable-org/fable-library-ts/AsyncBuilder.js +61 -11
- package/dist/ts/node_modules/@fable-org/fable-library-ts/BigInt.js +15 -5
- package/dist/ts/node_modules/@fable-org/fable-library-ts/BitConverter.js +139 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Date.js +1 -1
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Decimal.js +68 -12
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Double.js +24 -10
- package/dist/ts/node_modules/@fable-org/fable-library-ts/FSharp.Core.js +8 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Global.js +1 -1
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Int32.js +11 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/List.js +220 -155
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Long.js +7 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Map.js +46 -39
- package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableMap.js +75 -92
- package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableSet.js +56 -76
- package/dist/ts/node_modules/@fable-org/fable-library-ts/NumberStyles.js +54 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Numeric.js +10 -5
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Random.js +3 -4
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Range.js +4 -3
- package/dist/ts/node_modules/@fable-org/fable-library-ts/RegExp.js +2 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq.js +128 -64
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq2.js +4 -8
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Set.js +64 -57
- package/dist/ts/node_modules/@fable-org/fable-library-ts/String.js +68 -21
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Collections.Generic.js +3 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Text.js +2 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.js +5 -5
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Types.js +23 -12
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Util.js +88 -49
- package/dist/ts/node_modules/@fable-org/fable-library-ts/lib/big.js +121 -74
- package/dist/ts/ts/ARC.d.ts +22 -5
- package/dist/ts/ts/ARC.d.ts.map +1 -1
- package/dist/ts/ts/ARC.js +282 -185
- package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts +0 -2
- package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLKnownFieldNames.js +1 -7
- package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts +46 -27
- package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLProcessingUnit.js +312 -123
- package/dist/ts/ts/CWL/CWLTypes.d.ts +481 -148
- package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLTypes.js +887 -201
- package/dist/ts/ts/CWL/Decode.d.ts +480 -211
- package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Decode.js +3614 -2462
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +9 -0
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -1
- package/dist/ts/ts/CWL/DynamicObjHelpers.js +55 -5
- package/dist/ts/ts/CWL/Encode.d.ts +225 -85
- package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Encode.js +1858 -970
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +42 -28
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ExpressionToolDescription.js +34 -13
- package/dist/ts/ts/CWL/HashHelpers.d.ts +38 -0
- package/dist/ts/ts/CWL/HashHelpers.d.ts.map +1 -1
- package/dist/ts/ts/CWL/HashHelpers.js +255 -6
- package/dist/ts/ts/CWL/Inputs.d.ts +127 -56
- package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Inputs.js +107 -16
- package/dist/ts/ts/CWL/OperationDescription.d.ts +41 -21
- package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/OperationDescription.js +35 -9
- package/dist/ts/ts/CWL/Outputs.d.ts +93 -42
- package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Outputs.js +101 -19
- package/dist/ts/ts/CWL/ParameterReference.d.ts +11 -8
- package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ParameterReference.js +18 -25
- package/dist/ts/ts/CWL/ParameterValue.d.ts +15 -1
- package/dist/ts/ts/CWL/ParameterValue.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ParameterValue.js +59 -35
- package/dist/ts/ts/CWL/Requirements.d.ts +240 -98
- package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Requirements.js +462 -89
- package/dist/ts/ts/CWL/ScalarQuoting.d.ts +51 -0
- package/dist/ts/ts/CWL/ScalarQuoting.d.ts.map +1 -0
- package/dist/ts/ts/CWL/ScalarQuoting.js +250 -0
- package/dist/ts/ts/CWL/ToolDescription.d.ts +63 -50
- package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ToolDescription.js +34 -13
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts +45 -26
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowDescription.js +38 -11
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts +248 -65
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowSteps.js +413 -43
- package/dist/ts/ts/CWLRunResolver.d.ts +30 -12
- package/dist/ts/ts/CWLRunResolver.d.ts.map +1 -1
- package/dist/ts/ts/CWLRunResolver.js +221 -86
- package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ARC.js +13 -14
- package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcAssay.js +4 -4
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcInvestigation.js +3 -4
- package/dist/ts/ts/Contract/ArcRun.d.ts +12 -2
- package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcRun.js +47 -20
- package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcStudy.js +4 -4
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts +18 -4
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcWorkflow.js +55 -17
- package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Datamap.js +16 -17
- package/dist/ts/ts/Contract/Git.js +1 -1
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +4 -5
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +7 -0
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.js +95 -18
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +1 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +12 -5
- package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Assay.js +26 -18
- package/dist/ts/ts/Conversion/Basic.d.ts +4 -0
- package/dist/ts/ts/Conversion/Basic.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Basic.js +55 -31
- package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ColumnIndex.js +2 -4
- package/dist/ts/ts/Conversion/DateTime.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/DateTime.js +1 -2
- package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Investigation.js +15 -14
- package/dist/ts/ts/Conversion/Person.js +11 -11
- package/dist/ts/ts/Conversion/Process.d.ts +4 -2
- package/dist/ts/ts/Conversion/Process.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Process.js +134 -97
- package/dist/ts/ts/Conversion/Run.d.ts +36 -6
- package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Run.js +320 -136
- package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ScholarlyArticle.js +75 -9
- package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Study.js +23 -12
- package/dist/ts/ts/Conversion/Table.d.ts +3 -2
- package/dist/ts/ts/Conversion/Table.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Table.js +8 -8
- package/dist/ts/ts/Conversion/Workflow.d.ts +48 -9
- package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Workflow.js +655 -163
- package/dist/ts/ts/Conversion.js +6 -6
- package/dist/ts/ts/Core/ArcTypes.d.ts +73 -28
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
- package/dist/ts/ts/Core/ArcTypes.js +219 -129
- package/dist/ts/ts/Core/Comment.d.ts.map +1 -1
- package/dist/ts/ts/Core/Comment.js +2 -2
- package/dist/ts/ts/Core/CommentList.js +7 -7
- package/dist/ts/ts/Core/Conversion.d.ts.map +1 -1
- package/dist/ts/ts/Core/Conversion.js +68 -59
- package/dist/ts/ts/Core/Data.d.ts +6 -0
- package/dist/ts/ts/Core/Data.d.ts.map +1 -1
- package/dist/ts/ts/Core/Data.js +32 -12
- package/dist/ts/ts/Core/DataContext.d.ts +1 -1
- package/dist/ts/ts/Core/DataContext.d.ts.map +1 -1
- package/dist/ts/ts/Core/DataContext.js +4 -4
- package/dist/ts/ts/Core/DataFile.d.ts +11 -8
- package/dist/ts/ts/Core/DataFile.d.ts.map +1 -1
- package/dist/ts/ts/Core/DataFile.js +55 -61
- package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Core/Datamap.js +2 -3
- package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Collections.js +2 -4
- package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Identifier.js +12 -15
- package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/ORCID.js +2 -3
- package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Regex.js +52 -53
- package/dist/ts/ts/Core/Helper/SemVer.d.ts +13 -3
- package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/SemVer.js +96 -6
- package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Url.js +1 -1
- package/dist/ts/ts/Core/OntologyAnnotation.js +22 -22
- package/dist/ts/ts/Core/Person.d.ts.map +1 -1
- package/dist/ts/ts/Core/Person.js +2 -2
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ColumnIndex.js +10 -12
- package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Component.js +22 -22
- package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Factor.js +7 -7
- package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/FactorValue.js +15 -15
- package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Material.js +2 -2
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +6 -6
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +16 -16
- package/dist/ts/ts/Core/Process/Process.js +21 -21
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessInput.js +2 -2
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessOutput.js +2 -2
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +17 -17
- package/dist/ts/ts/Core/Process/ProcessSequence.js +4 -4
- package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Protocol.js +9 -9
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -6
- package/dist/ts/ts/Core/Publication.d.ts.map +1 -1
- package/dist/ts/ts/Core/Publication.js +3 -3
- package/dist/ts/ts/Core/ScalarValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/ScalarValue.js +9 -13
- package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTable.js +18 -18
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +1 -1
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTableAux.js +59 -70
- package/dist/ts/ts/Core/Table/ArcTables.js +16 -16
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts +4 -0
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/CompositeCell.js +39 -2
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/CompositeHeader.js +5 -6
- package/dist/ts/ts/Core/Templates.d.ts.map +1 -1
- package/dist/ts/ts/Core/Templates.js +2 -2
- package/dist/ts/ts/FileSystem/Path.d.ts +13 -2
- package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
- package/dist/ts/ts/FileSystem/Path.js +37 -19
- package/dist/ts/ts/Json/Assay.js +22 -22
- package/dist/ts/ts/Json/Comment.js +9 -9
- package/dist/ts/ts/Json/Data.d.ts.map +1 -1
- package/dist/ts/ts/Json/Data.js +11 -11
- package/dist/ts/ts/Json/Datamap/DataContext.js +2 -2
- package/dist/ts/ts/Json/Decode.d.ts.map +1 -1
- package/dist/ts/ts/Json/Decode.js +3 -5
- package/dist/ts/ts/Json/Encode.js +2 -2
- package/dist/ts/ts/Json/Investigation.d.ts.map +1 -1
- package/dist/ts/ts/Json/Investigation.js +20 -20
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/ts/Json/OntologyAnnotation.js +18 -18
- package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -1
- package/dist/ts/ts/Json/OntologySourceReference.js +9 -9
- package/dist/ts/ts/Json/Person.d.ts.map +1 -1
- package/dist/ts/ts/Json/Person.js +20 -20
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/AssayMaterials.js +1 -2
- package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Component.js +5 -6
- package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Factor.js +7 -7
- package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/FactorValue.js +2 -3
- package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Material.js +9 -10
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttribute.js +5 -6
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +2 -3
- package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Process.js +8 -9
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/ProcessParameterValue.js +1 -2
- package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Protocol.js +17 -17
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/ProtocolParameter.js +6 -6
- package/dist/ts/ts/Json/Process/Sample.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Sample.js +9 -9
- package/dist/ts/ts/Json/Process/Source.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/Source.js +10 -11
- package/dist/ts/ts/Json/Process/StudyMaterials.d.ts.map +1 -1
- package/dist/ts/ts/Json/Process/StudyMaterials.js +1 -2
- package/dist/ts/ts/Json/PropertyValue.d.ts.map +1 -1
- package/dist/ts/ts/Json/PropertyValue.js +24 -24
- package/dist/ts/ts/Json/Publication.d.ts.map +1 -1
- package/dist/ts/ts/Json/Publication.js +10 -10
- package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -2
- package/dist/ts/ts/Json/ROCrate/LDGraph.js +2 -2
- package/dist/ts/ts/Json/ROCrate/LDNode.js +5 -5
- package/dist/ts/ts/Json/Run.js +9 -9
- package/dist/ts/ts/Json/StringTable.d.ts.map +1 -1
- package/dist/ts/ts/Json/StringTable.js +4 -7
- package/dist/ts/ts/Json/Study.js +20 -20
- package/dist/ts/ts/Json/Table/CellTable.js +1 -2
- package/dist/ts/ts/Json/Table/OATable.js +1 -2
- package/dist/ts/ts/Json/Workflow.js +9 -9
- package/dist/ts/ts/Json.d.ts +121 -1
- package/dist/ts/ts/Json.d.ts.map +1 -1
- package/dist/ts/ts/Json.js +310 -2
- package/dist/ts/ts/JsonIO/Comment.d.ts +15 -0
- package/dist/ts/ts/JsonIO/Comment.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Comment.js +67 -0
- package/dist/ts/ts/JsonIO/Data.d.ts +9 -0
- package/dist/ts/ts/JsonIO/Data.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Data.js +49 -0
- package/dist/ts/ts/JsonIO/DataFile.d.ts +9 -0
- package/dist/ts/ts/JsonIO/DataFile.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/DataFile.js +48 -0
- package/dist/ts/ts/JsonIO/LDObject.d.ts +6 -0
- package/dist/ts/ts/JsonIO/LDObject.d.ts.map +1 -1
- package/dist/ts/ts/JsonIO/LDObject.js +173 -17
- package/dist/ts/ts/JsonIO/OntologySourceReference.d.ts +15 -0
- package/dist/ts/ts/JsonIO/OntologySourceReference.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/OntologySourceReference.js +67 -0
- package/dist/ts/ts/JsonIO/Publication.d.ts +15 -0
- package/dist/ts/ts/JsonIO/Publication.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Publication.js +68 -0
- package/dist/ts/ts/JsonIO/Table/ArcTable.d.ts +9 -0
- package/dist/ts/ts/JsonIO/Table/ArcTable.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/ArcTable.js +74 -0
- package/dist/ts/ts/JsonIO/Table/CompositeCell.d.ts +6 -0
- package/dist/ts/ts/JsonIO/Table/CompositeCell.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/CompositeCell.js +29 -0
- package/dist/ts/ts/JsonIO/Table/CompositeHeader.d.ts +6 -0
- package/dist/ts/ts/JsonIO/Table/CompositeHeader.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/CompositeHeader.js +29 -0
- package/dist/ts/ts/JsonIO/Table/IOType.d.ts +6 -0
- package/dist/ts/ts/JsonIO/Table/IOType.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/IOType.js +29 -0
- package/dist/ts/ts/License.d.ts.map +1 -1
- package/dist/ts/ts/License.js +6 -6
- package/dist/ts/ts/ROCrate/LDContext.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/LDContext.js +31 -39
- package/dist/ts/ts/ROCrate/LDObject.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/LDObject.js +56 -49
- package/dist/ts/ts/ROCrate/LDTypes/Comment.js +2 -2
- package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js +3 -3
- package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.js +2 -2
- package/dist/ts/ts/ROCrate/LDTypes/CreateAction.js +5 -5
- package/dist/ts/ts/ROCrate/LDTypes/CreativeWork.d.ts +1 -0
- package/dist/ts/ts/ROCrate/LDTypes/CreativeWork.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/LDTypes/CreativeWork.js +3 -0
- package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/LDTypes/Dataset.js +22 -17
- package/dist/ts/ts/ROCrate/LDTypes/DefinedTerm.js +2 -2
- package/dist/ts/ts/ROCrate/LDTypes/File.js +5 -5
- package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.js +2 -2
- package/dist/ts/ts/ROCrate/LDTypes/LabProcess.js +9 -9
- package/dist/ts/ts/ROCrate/LDTypes/LabProtocol.js +4 -4
- package/dist/ts/ts/ROCrate/LDTypes/Organization.js +1 -1
- package/dist/ts/ts/ROCrate/LDTypes/Person.js +7 -7
- package/dist/ts/ts/ROCrate/LDTypes/PostalAddress.js +1 -1
- package/dist/ts/ts/ROCrate/LDTypes/PropertyValue.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/LDTypes/PropertyValue.js +45 -48
- package/dist/ts/ts/ROCrate/LDTypes/Sample.js +3 -3
- package/dist/ts/ts/ROCrate/LDTypes/ScholarlyArticle.js +4 -4
- package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.js +3 -3
- package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.js +3 -3
- package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.js +2 -2
- package/dist/ts/ts/ROCrateIO.d.ts +18 -4
- package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
- package/dist/ts/ts/ROCrateIO.js +49 -38
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +9 -10
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +7 -7
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +6 -8
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +20 -20
- package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcAssay.js +7 -7
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +10 -12
- package/dist/ts/ts/Spreadsheet/ArcRun.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcRun.js +5 -6
- package/dist/ts/ts/Spreadsheet/ArcStudy.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcStudy.js +3 -3
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +5 -6
- package/dist/ts/ts/Spreadsheet/CollectionAux.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/CollectionAux.js +10 -14
- package/dist/ts/ts/Spreadsheet/Datamap.js +1 -2
- package/dist/ts/ts/Spreadsheet/DatamapTable/DatamapColumn.js +3 -3
- package/dist/ts/ts/Spreadsheet/DatamapTable/DatamapHeader.js +10 -10
- package/dist/ts/ts/Spreadsheet/DatamapTable/DatamapTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DatamapTable/DatamapTable.js +9 -10
- package/dist/ts/ts/Spreadsheet/Metadata/Assays.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +8 -10
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.d.ts +8 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +18 -7
- package/dist/ts/ts/Spreadsheet/Metadata/Contacts.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +4 -6
- package/dist/ts/ts/Spreadsheet/Metadata/Factors.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +6 -8
- package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +5 -7
- package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +2 -4
- package/dist/ts/ts/Spreadsheet/Metadata/Protocols.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +7 -9
- package/dist/ts/ts/Spreadsheet/Metadata/Publication.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +6 -8
- package/dist/ts/ts/Spreadsheet/Metadata/Run.d.ts +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Run.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Run.js +9 -11
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +17 -17
- package/dist/ts/ts/Spreadsheet/Metadata/Study.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Study.js +10 -12
- package/dist/ts/ts/Spreadsheet/Metadata/Workflow.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +7 -9
- package/dist/ts/ts/WorkflowGraph/Adapters.d.ts +1 -1
- package/dist/ts/ts/WorkflowGraph/Adapters.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/Adapters.js +5 -6
- package/dist/ts/ts/WorkflowGraph/Builder.d.ts +25 -6
- package/dist/ts/ts/WorkflowGraph/Builder.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/Builder.js +264 -138
- package/dist/ts/ts/WorkflowGraph/GraphTypes.d.ts +6 -0
- package/dist/ts/ts/WorkflowGraph/GraphTypes.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/GraphTypes.js +4 -1
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts +8 -5
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
- package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +27 -10
- package/dist/ts/ts/Xlsx.js +3 -3
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts +3 -3
- package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackage.js +11 -23
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +3 -3
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +11 -23
- package/dist/ts/ts/fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js +16 -20
- package/dist/ts/ts/fable_modules/DynamicObj.8.0.0/FableJS.fs.js +1 -1
- package/dist/ts/ts/fable_modules/DynamicObj.8.0.0/ReflectionUtils.fs.js +8 -8
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/Promise.fs.js +1 -2
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.6.0/Http.fs.js +4 -4
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Cells/FsCell.fs.js +8 -8
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Cells/FsCellsCollection.fs.js +18 -18
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/FsAddress.fs.js +3 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js +1 -1
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/FsWorksheet.fs.js +7 -7
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Json/Value.fs.js +3 -5
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Json/Worksheet.fs.js +7 -7
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Ranges/FsRangeBase.fs.js +1 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.1/Tables/FsTable.fs.js +7 -7
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.1/Cell.fs.js +2 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.1/Table.fs.js +1 -2
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.9.1/Decode.fs.js +49 -71
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.9.1/Encode.fs.js +1 -1
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.5.0/Decode.fs.js +1 -2
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Compare.fs.js +857 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/CoreSchema.fs.js +725 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Decode.fs.js +1175 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Encode.fs.js +123 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Layout.fs.js +282 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Lexeme.fs.js +203 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Lexer.fs.js +1502 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Model.fs.js +564 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Node.fs.js +453 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Parser.fs.js +2622 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Reader.fs.js +108 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Source.fs.js +649 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Tag.fs.js +32 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Validate.fs.js +1084 -0
- package/dist/ts/ts/fable_modules/YAMLicious.2.0.0/Writer.fs.js +2927 -0
- package/package.json +5 -4
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Decode.fs.js +0 -1669
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Encode.fs.js +0 -57
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Escapes.fs.js +0 -320
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Interop/JsInterop.fs.js +0 -10
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Persil.fs.js +0 -414
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Preprocessing.fs.js +0 -319
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Reader.fs.js +0 -1884
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Regex.fs.js +0 -23
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/RegexActivePatterns.fs.js +0 -313
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Syntax.fs.js +0 -840
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/Writer.fs.js +0 -689
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0/YAMLiciousTypes.fs.js +0 -359
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import { ListEntry$1_$union, SourceNodes, SchemaSaladBool_$union, DocText_$union, SchemaSaladString_$union, RawYaml } from './CWLTypes.ts';
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export type LinkMergeMethod_$union = LinkMergeMethod<0> | LinkMergeMethod<1>;
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export type LinkMergeMethod_$union = LinkMergeMethod<0> | LinkMergeMethod<1> | LinkMergeMethod<2> | LinkMergeMethod<3> | LinkMergeMethod<4>;
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export type PickValueMethod_$union = PickValueMethod<0> | PickValueMethod<1> | PickValueMethod<2>;
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export type PickValueMethod_$union = PickValueMethod<0> | PickValueMethod<1> | PickValueMethod<2> | PickValueMethod<3> | PickValueMethod<4> | PickValueMethod<5>;
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export type ScatterMethod_$union = ScatterMethod<0> | ScatterMethod<1> | ScatterMethod<2>;
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static nestedCrossProduct(): ScatterMethod_$union;
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static flatCrossProduct(): ScatterMethod_$union;
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static importedScatterMethod(value: string): ScatterMethod_$union;
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static mixedScatterMethod(value: RawYaml): ScatterMethod_$union;
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/**
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* The name of the symbol as a document spells it, and for a directive the text with the directive in front of the
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* path. The text of a directive serves for display, because the encoder writes the directive as a mapping.
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*/
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get AsCwlString(): string;
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static tryParse(value: string): Option<ScatterMethod_$union>;
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}
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export declare function ScatterMethod_$reflection(): TypeInfo;
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export declare class StepInput extends DynamicObj {
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constructor(id: string, source?: OutputSource_$union, defaultValue?: RawYaml, valueFrom?: SchemaSaladString_$union, linkMerge?: LinkMergeMethod_$union, pickValue?: PickValueMethod_$union, doc?: DocText_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, label?: SchemaSaladString_$union);
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get Source():
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get DefaultValue():
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set DefaultValue(value: Option<
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get ValueFrom():
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set ValueFrom(value: Option<
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set Source(value: Option<OutputSource_$union>);
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get DefaultValue(): RawYaml | undefined;
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set DefaultValue(value: Option<RawYaml>);
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get ValueFrom(): SchemaSaladString_$union | undefined;
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set ValueFrom(value: Option<SchemaSaladString_$union>);
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get LinkMerge(): LinkMergeMethod_$union | undefined;
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set LinkMerge(value: Option<LinkMergeMethod_$union>);
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get PickValue(): PickValueMethod_$union | undefined;
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get Doc():
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set Doc(value: Option<
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get LoadContents():
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set LoadContents(value: Option<
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get LoadListing():
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set LoadListing(value: Option<
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get Label():
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set Label(value: Option<
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get Doc(): DocText_$union | undefined;
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set Doc(value: Option<DocText_$union>);
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get LoadContents(): SchemaSaladBool_$union | undefined;
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set LoadContents(value: Option<SchemaSaladBool_$union>);
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get LoadListing(): LoadListingEnum_$union | undefined;
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set LoadListing(value: Option<LoadListingEnum_$union>);
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get Label(): SchemaSaladString_$union | undefined;
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set Label(value: Option<SchemaSaladString_$union>);
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/**
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* The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
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* They stay out of the equality and the hash of the object.
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*/
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get SourceNodes(): SourceNodes;
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/**
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* The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
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* They stay out of the equality and the hash of the object.
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*/
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set SourceNodes(value: SourceNodes);
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Equals(o: any): boolean;
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GetHashCode(): int32;
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static create(id: string, source?:
|
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static create(id: string, source?: OutputSource_$union, defaultValue?: RawYaml, valueFrom?: SchemaSaladString_$union, linkMerge?: LinkMergeMethod_$union, pickValue?: PickValueMethod_$union, doc?: DocText_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, label?: SchemaSaladString_$union): StepInput;
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static get KnownFieldNames(): FSharpSet<string>;
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/**
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* Updates
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* Updates the StepInput at the given index of the entries. An import and a mixin have no StepInput to update.
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*/
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|
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static updateAt(index: int32, f: ((arg0: StepInput) => StepInput), inputs: StepInput[]): void;
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static updateAt(index: int32, f: ((arg0: StepInput) => StepInput), inputs: ListEntry$1_$union<StepInput>[]): void;
|
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|
}
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export declare function StepInput_$reflection(): TypeInfo;
|
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|
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export declare function StepInput_$
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export declare function StepInput_$ctor_4AFD3CA4(id: string, source?: OutputSource_$union, defaultValue?: RawYaml, valueFrom?: SchemaSaladString_$union, linkMerge?: LinkMergeMethod_$union, pickValue?: PickValueMethod_$union, doc?: DocText_$union, loadContents?: SchemaSaladBool_$union, loadListing?: LoadListingEnum_$union, label?: SchemaSaladString_$union): StepInput;
|
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export declare class StepOutputParameter extends DynamicObj {
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_id: string;
|
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constructor(id: string);
|
|
@@ -121,79 +192,191 @@ export declare class StepOutputParameter extends DynamicObj {
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}
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|
export declare function StepOutputParameter_$reflection(): TypeInfo;
|
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|
export declare function StepOutputParameter_$ctor_Z721C83C5(id: string): StepOutputParameter;
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|
-
export type StepOutput_$union = StepOutput<0> | StepOutput<1>;
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|
+
export type StepOutput_$union = StepOutput<0> | StepOutput<1> | StepOutput<2> | StepOutput<3> | StepOutput<4>;
|
|
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|
export type StepOutput_$cases = {
|
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|
0: ["StepOutputString", [string]];
|
|
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|
1: ["StepOutputRecord", [StepOutputParameter]];
|
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|
+
2: ["StepOutputInclude", [string]];
|
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3: ["StepOutputImport", [string]];
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|
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4: ["StepOutputMixed", [RawYaml]];
|
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|
};
|
|
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203
|
export declare function StepOutput_StepOutputString(Item: string): StepOutput<0>;
|
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|
export declare function StepOutput_StepOutputRecord(Item: StepOutputParameter): StepOutput<1>;
|
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|
+
export declare function StepOutput_StepOutputInclude(Item: string): StepOutput<2>;
|
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|
+
export declare function StepOutput_StepOutputImport(Item: string): StepOutput<3>;
|
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|
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export declare function StepOutput_StepOutputMixed(Item: RawYaml): StepOutput<4>;
|
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|
+
/**
|
|
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* An entry of the out field of a step. An entry is the id of an output or an object with the id. A document can write
|
|
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|
+
* a directive in its place, and Schema Salad replaces the directive with the file. An $include yields the text of the
|
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|
+
* file, which is an id. An $import yields the data of the file, which is an output or a list of outputs. The decoder
|
|
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|
+
* reads no file, so a directive stays an entry of its own, in its place.
|
|
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|
+
*/
|
|
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|
export declare class StepOutput<Tag extends keyof StepOutput_$cases> extends Union<Tag, StepOutput_$cases[Tag][0]> {
|
|
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215
|
constructor(tag: Tag, fields: StepOutput_$cases[Tag][1]);
|
|
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|
readonly tag: Tag;
|
|
134
217
|
readonly fields: StepOutput_$cases[Tag][1];
|
|
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218
|
cases(): string[];
|
|
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|
+
/**
|
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|
+
* The id of an output that the document writes out, and none for an entry that names a file, because the id is in
|
|
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|
+
* the file.
|
|
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|
+
*/
|
|
223
|
+
static tryId(output: StepOutput_$union): Option<string>;
|
|
224
|
+
static stepOutputString(value: string): StepOutput_$union;
|
|
225
|
+
static stepOutputRecord(value: StepOutputParameter): StepOutput_$union;
|
|
226
|
+
static stepOutputInclude(value: string): StepOutput_$union;
|
|
227
|
+
static stepOutputImport(value: string): StepOutput_$union;
|
|
228
|
+
static stepOutputMixed(value: RawYaml): StepOutput_$union;
|
|
136
229
|
}
|
|
137
230
|
export declare function StepOutput_$reflection(): TypeInfo;
|
|
138
|
-
export type WorkflowStepRun_$union = WorkflowStepRun<0> | WorkflowStepRun<1> | WorkflowStepRun<2> | WorkflowStepRun<3> | WorkflowStepRun<4>;
|
|
231
|
+
export type WorkflowStepRun_$union = WorkflowStepRun<0> | WorkflowStepRun<1> | WorkflowStepRun<2> | WorkflowStepRun<3> | WorkflowStepRun<4> | WorkflowStepRun<5> | WorkflowStepRun<6> | WorkflowStepRun<7>;
|
|
139
232
|
export type WorkflowStepRun_$cases = {
|
|
140
233
|
0: ["RunString", [string]];
|
|
141
|
-
1: ["
|
|
142
|
-
2: ["
|
|
143
|
-
3: ["
|
|
144
|
-
4: ["
|
|
234
|
+
1: ["RunImport", [string]];
|
|
235
|
+
2: ["RunMixed", [RawYaml]];
|
|
236
|
+
3: ["RunRaw", [RawYaml]];
|
|
237
|
+
4: ["RunCommandLineTool", [any]];
|
|
238
|
+
5: ["RunWorkflow", [any]];
|
|
239
|
+
6: ["RunExpressionTool", [any]];
|
|
240
|
+
7: ["RunOperation", [any]];
|
|
145
241
|
};
|
|
146
242
|
export declare function WorkflowStepRun_RunString(Item: string): WorkflowStepRun<0>;
|
|
147
|
-
export declare function
|
|
148
|
-
export declare function
|
|
149
|
-
export declare function
|
|
150
|
-
export declare function
|
|
243
|
+
export declare function WorkflowStepRun_RunImport(Item: string): WorkflowStepRun<1>;
|
|
244
|
+
export declare function WorkflowStepRun_RunMixed(Item: RawYaml): WorkflowStepRun<2>;
|
|
245
|
+
export declare function WorkflowStepRun_RunRaw(Item: RawYaml): WorkflowStepRun<3>;
|
|
246
|
+
export declare function WorkflowStepRun_RunCommandLineTool(Item: any): WorkflowStepRun<4>;
|
|
247
|
+
export declare function WorkflowStepRun_RunWorkflow(Item: any): WorkflowStepRun<5>;
|
|
248
|
+
export declare function WorkflowStepRun_RunExpressionTool(Item: any): WorkflowStepRun<6>;
|
|
249
|
+
export declare function WorkflowStepRun_RunOperation(Item: any): WorkflowStepRun<7>;
|
|
151
250
|
export declare class WorkflowStepRun<Tag extends keyof WorkflowStepRun_$cases> extends Union<Tag, WorkflowStepRun_$cases[Tag][0]> {
|
|
152
251
|
constructor(tag: Tag, fields: WorkflowStepRun_$cases[Tag][1]);
|
|
153
252
|
readonly tag: Tag;
|
|
154
253
|
readonly fields: WorkflowStepRun_$cases[Tag][1];
|
|
155
254
|
cases(): string[];
|
|
255
|
+
static runString(value: string): WorkflowStepRun_$union;
|
|
256
|
+
static runImport(value: string): WorkflowStepRun_$union;
|
|
257
|
+
static runMixed(value: RawYaml): WorkflowStepRun_$union;
|
|
258
|
+
static runRaw(value: RawYaml): WorkflowStepRun_$union;
|
|
259
|
+
static runCommandLineTool(value: any): WorkflowStepRun_$union;
|
|
260
|
+
static runWorkflow(value: any): WorkflowStepRun_$union;
|
|
261
|
+
static runExpressionTool(value: any): WorkflowStepRun_$union;
|
|
262
|
+
static runOperation(value: any): WorkflowStepRun_$union;
|
|
156
263
|
}
|
|
157
264
|
export declare function WorkflowStepRun_$reflection(): TypeInfo;
|
|
265
|
+
/**
|
|
266
|
+
* The process that the run reference of a step resolved to. The run holds the reference as it is written, and this
|
|
267
|
+
* holds what it stands for, one of the four cases of a run that carry a process. The reader of an ARC sets it from the
|
|
268
|
+
* other files of the ARC, and a step that was not read from an ARC has none.
|
|
269
|
+
*
|
|
270
|
+
* The resolved process is no part of the value of the step, so every ResolvedRun is equal to every other one and hashes
|
|
271
|
+
* to 0. DynamicObj compares and hashes all properties of an object, and the resolved process is a whole workflow with
|
|
272
|
+
* resolved steps of its own.
|
|
273
|
+
*/
|
|
274
|
+
export declare class ResolvedRun extends Record {
|
|
275
|
+
readonly Run: Option<WorkflowStepRun_$union>;
|
|
276
|
+
constructor(Run: Option<WorkflowStepRun_$union>);
|
|
277
|
+
Equals(o: any): boolean;
|
|
278
|
+
GetHashCode(): int32;
|
|
279
|
+
}
|
|
280
|
+
export declare function ResolvedRun_$reflection(): TypeInfo;
|
|
281
|
+
export declare function ResolvedRun_get_Empty(): ResolvedRun;
|
|
158
282
|
export declare class WorkflowStep extends DynamicObj {
|
|
159
|
-
_id: string
|
|
160
|
-
_in: StepInput[];
|
|
283
|
+
_id: Option<string>;
|
|
284
|
+
_in: ListEntry$1_$union<StepInput>[];
|
|
161
285
|
_out: StepOutput_$union[];
|
|
162
286
|
_run: WorkflowStepRun_$union;
|
|
163
|
-
_label: Option<
|
|
164
|
-
_doc: Option<
|
|
165
|
-
_scatter: Option<
|
|
287
|
+
_label: Option<SchemaSaladString_$union>;
|
|
288
|
+
_doc: Option<DocText_$union>;
|
|
289
|
+
_scatter: Option<SchemaSaladString_$union[]>;
|
|
166
290
|
_scatterMethod: Option<ScatterMethod_$union>;
|
|
167
|
-
_when: Option<
|
|
291
|
+
_when: Option<SchemaSaladString_$union>;
|
|
168
292
|
_requirements: Option<Requirement_$union[]>;
|
|
169
293
|
_hints: Option<HintEntry_$union[]>;
|
|
170
|
-
|
|
171
|
-
|
|
172
|
-
|
|
173
|
-
|
|
174
|
-
|
|
294
|
+
_sourceNodes: SourceNodes;
|
|
295
|
+
_resolvedRun: ResolvedRun;
|
|
296
|
+
constructor(id: Option<string>, in_: ListEntry$1_$union<StepInput>[], out_: StepOutput_$union[], run: WorkflowStepRun_$union, label?: SchemaSaladString_$union, doc?: DocText_$union, scatter?: SchemaSaladString_$union[], scatterMethod?: ScatterMethod_$union, when_?: SchemaSaladString_$union, requirements?: Requirement_$union[], hints?: HintEntry_$union[]);
|
|
297
|
+
/**
|
|
298
|
+
* The id of the step. CWL makes the id of a step optional, so a step without an id key has none, and a step with
|
|
299
|
+
* id: "" has the empty text. The decoder and the model never make up an id.
|
|
300
|
+
*/
|
|
301
|
+
get Id(): string | undefined;
|
|
302
|
+
/**
|
|
303
|
+
* The id of the step. CWL makes the id of a step optional, so a step without an id key has none, and a step with
|
|
304
|
+
* id: "" has the empty text. The decoder and the model never make up an id.
|
|
305
|
+
*/
|
|
306
|
+
set Id(id: Option<string>);
|
|
307
|
+
get In(): ListEntry$1_$union<StepInput>[];
|
|
308
|
+
set In(in_: ListEntry$1_$union<StepInput>[]);
|
|
175
309
|
get Out(): StepOutput_$union[];
|
|
176
310
|
set Out(out_: StepOutput_$union[]);
|
|
311
|
+
/**
|
|
312
|
+
* The run as it is written: a reference to a file, or an inline process. Setting it drops the resolved process,
|
|
313
|
+
* which belonged to the previous reference.
|
|
314
|
+
*/
|
|
177
315
|
get Run(): WorkflowStepRun_$union;
|
|
316
|
+
/**
|
|
317
|
+
* The run as it is written: a reference to a file, or an inline process. Setting it drops the resolved process,
|
|
318
|
+
* which belonged to the previous reference.
|
|
319
|
+
*/
|
|
178
320
|
set Run(run: WorkflowStepRun_$union);
|
|
179
|
-
|
|
180
|
-
|
|
181
|
-
|
|
182
|
-
|
|
183
|
-
get
|
|
184
|
-
|
|
321
|
+
/**
|
|
322
|
+
* The process that a run reference resolved to. The encoder writes only Run, so resolving a reference never changes
|
|
323
|
+
* the text of the file.
|
|
324
|
+
*/
|
|
325
|
+
get ResolvedRun(): ResolvedRun;
|
|
326
|
+
/**
|
|
327
|
+
* The process that a run reference resolved to. The encoder writes only Run, so resolving a reference never changes
|
|
328
|
+
* the text of the file.
|
|
329
|
+
*/
|
|
330
|
+
set ResolvedRun(value: ResolvedRun);
|
|
331
|
+
get Label(): SchemaSaladString_$union | undefined;
|
|
332
|
+
set Label(label: Option<SchemaSaladString_$union>);
|
|
333
|
+
get Doc(): DocText_$union | undefined;
|
|
334
|
+
set Doc(doc: Option<DocText_$union>);
|
|
335
|
+
/**
|
|
336
|
+
* The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
|
|
337
|
+
* They stay out of the equality and the hash of the object.
|
|
338
|
+
*/
|
|
339
|
+
get SourceNodes(): SourceNodes;
|
|
340
|
+
/**
|
|
341
|
+
* The nodes that the doc and the label were read from. The encoder writes the layout of the author from them.
|
|
342
|
+
* They stay out of the equality and the hash of the object.
|
|
343
|
+
*/
|
|
344
|
+
set SourceNodes(value: SourceNodes);
|
|
345
|
+
get Scatter(): SchemaSaladString_$union[] | undefined;
|
|
346
|
+
set Scatter(scatter: Option<SchemaSaladString_$union[]>);
|
|
185
347
|
get ScatterMethod(): ScatterMethod_$union | undefined;
|
|
186
348
|
set ScatterMethod(scatterMethod: Option<ScatterMethod_$union>);
|
|
187
|
-
get When_():
|
|
188
|
-
set When_(when_: Option<
|
|
349
|
+
get When_(): SchemaSaladString_$union | undefined;
|
|
350
|
+
set When_(when_: Option<SchemaSaladString_$union>);
|
|
189
351
|
get Requirements(): Requirement_$union[] | undefined;
|
|
190
352
|
set Requirements(requirements: Option<Requirement_$union[]>);
|
|
191
353
|
get Hints(): HintEntry_$union[] | undefined;
|
|
192
354
|
set Hints(hints: Option<HintEntry_$union[]>);
|
|
193
|
-
|
|
355
|
+
/**
|
|
356
|
+
* A step without an id and a step with the empty id hash alike under the hash of the properties on Python, so the id
|
|
357
|
+
* is part of the equality and of the hash on its own.
|
|
358
|
+
*/
|
|
359
|
+
Equals(o: any): boolean;
|
|
360
|
+
GetHashCode(): int32;
|
|
361
|
+
static fromRunPath(id: string, in_: ListEntry$1_$union<StepInput>[], out_: StepOutput_$union[], runPath: string, label?: SchemaSaladString_$union, doc?: DocText_$union, scatter?: SchemaSaladString_$union[], scatterMethod?: ScatterMethod_$union, when_?: SchemaSaladString_$union, requirements?: Requirement_$union[], hints?: HintEntry_$union[]): WorkflowStep;
|
|
194
362
|
static get KnownFieldNames(): FSharpSet<string>;
|
|
195
363
|
/**
|
|
196
|
-
*
|
|
364
|
+
* The run that holds the process of the step: the process that the reference resolved to, or the run itself when
|
|
365
|
+
* it is an inline process or a reference that did not resolve.
|
|
366
|
+
*/
|
|
367
|
+
static getResolvedRun(step: WorkflowStep): WorkflowStepRun_$union;
|
|
368
|
+
/**
|
|
369
|
+
* Returns a new list of the inputs of the step that are objects. The imports and the mixins are left out, so a change
|
|
370
|
+
* of the list changes nothing in the step. The entries of the step are in In.
|
|
371
|
+
*/
|
|
372
|
+
static getInputValues(step: WorkflowStep): StepInput[];
|
|
373
|
+
/**
|
|
374
|
+
* Returns a new list of the outputs of the step that the document writes out as an id or an object. The directives
|
|
375
|
+
* are left out, so a change of the list changes nothing in the step. The entries of the step are in Out.
|
|
376
|
+
*/
|
|
377
|
+
static getOutputValues(step: WorkflowStep): StepOutput_$union[];
|
|
378
|
+
/**
|
|
379
|
+
* Updates a workflow step input by the index of its entry. An import and a mixin have no input to update.
|
|
197
380
|
*/
|
|
198
381
|
static updateInputAt(index: int32, f: ((arg0: StepInput) => StepInput), step: WorkflowStep): void;
|
|
199
382
|
/**
|
|
@@ -201,7 +384,7 @@ export declare class WorkflowStep extends DynamicObj {
|
|
|
201
384
|
*/
|
|
202
385
|
static addInput(input: StepInput, step: WorkflowStep): void;
|
|
203
386
|
/**
|
|
204
|
-
* Removes all StepInputs matching the provided id.
|
|
387
|
+
* Removes all StepInputs matching the provided id. The imports and the mixins stay.
|
|
205
388
|
* Reassigns step.In to a new filtered ResizeArray.
|
|
206
389
|
*/
|
|
207
390
|
static removeInputsById(id: string, step: WorkflowStep): void;
|
|
@@ -211,5 +394,5 @@ export declare class WorkflowStep extends DynamicObj {
|
|
|
211
394
|
static updateInputById(id: string, f: ((arg0: StepInput) => StepInput), step: WorkflowStep): void;
|
|
212
395
|
}
|
|
213
396
|
export declare function WorkflowStep_$reflection(): TypeInfo;
|
|
214
|
-
export declare function WorkflowStep_$
|
|
397
|
+
export declare function WorkflowStep_$ctor_10F244C3(id: Option<string>, in_: ListEntry$1_$union<StepInput>[], out_: StepOutput_$union[], run: WorkflowStepRun_$union, label?: SchemaSaladString_$union, doc?: DocText_$union, scatter?: SchemaSaladString_$union[], scatterMethod?: ScatterMethod_$union, when_?: SchemaSaladString_$union, requirements?: Requirement_$union[], hints?: HintEntry_$union[]): WorkflowStep;
|
|
215
398
|
//# sourceMappingURL=WorkflowSteps.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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