@nfdi4plants/arctrl 3.0.0-beta.9 → 3.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (297) hide show
  1. package/README.md +30 -3
  2. package/dist/ts/index.d.ts +54 -16
  3. package/dist/ts/index.d.ts.map +1 -1
  4. package/dist/ts/index.js +56 -18
  5. package/dist/ts/ts/ARC.d.ts +26 -9
  6. package/dist/ts/ts/ARC.d.ts.map +1 -1
  7. package/dist/ts/ts/ARC.js +148 -63
  8. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts +62 -0
  9. package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map +1 -0
  10. package/dist/ts/ts/CWL/CWLProcessingUnit.js +250 -0
  11. package/dist/ts/ts/CWL/CWLTypes.d.ts +148 -0
  12. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -0
  13. package/dist/ts/ts/CWL/CWLTypes.js +384 -0
  14. package/dist/ts/ts/CWL/Decode.d.ts +214 -0
  15. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -0
  16. package/dist/ts/ts/CWL/Decode.js +2667 -0
  17. package/dist/ts/ts/CWL/Encode.d.ts +103 -0
  18. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -0
  19. package/dist/ts/ts/CWL/Encode.js +1513 -0
  20. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +50 -0
  21. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -0
  22. package/dist/ts/ts/CWL/ExpressionToolDescription.js +152 -0
  23. package/dist/ts/ts/CWL/HashHelpers.d.ts +9 -0
  24. package/dist/ts/ts/CWL/HashHelpers.d.ts.map +1 -0
  25. package/dist/ts/ts/CWL/HashHelpers.js +35 -0
  26. package/dist/ts/ts/CWL/Inputs.d.ts +31 -0
  27. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -0
  28. package/dist/ts/ts/CWL/Inputs.js +86 -0
  29. package/dist/ts/ts/CWL/OperationDescription.d.ts +46 -0
  30. package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -0
  31. package/dist/ts/ts/CWL/OperationDescription.js +133 -0
  32. package/dist/ts/ts/CWL/Outputs.d.ts +44 -0
  33. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -0
  34. package/dist/ts/ts/CWL/Outputs.js +143 -0
  35. package/dist/ts/ts/CWL/ParameterReference.d.ts +23 -0
  36. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -0
  37. package/dist/ts/ts/CWL/ParameterReference.js +60 -0
  38. package/dist/ts/ts/CWL/Requirements.d.ts +206 -0
  39. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -0
  40. package/dist/ts/ts/CWL/Requirements.js +384 -0
  41. package/dist/ts/ts/CWL/ToolDescription.d.ts +50 -0
  42. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -0
  43. package/dist/ts/ts/CWL/ToolDescription.js +152 -0
  44. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +50 -0
  45. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -0
  46. package/dist/ts/ts/CWL/WorkflowDescription.js +142 -0
  47. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +160 -0
  48. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -0
  49. package/dist/ts/ts/CWL/WorkflowSteps.js +317 -0
  50. package/dist/ts/ts/CWLRunResolver.d.ts +45 -0
  51. package/dist/ts/ts/CWLRunResolver.d.ts.map +1 -0
  52. package/dist/ts/ts/CWLRunResolver.js +181 -0
  53. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  54. package/dist/ts/ts/Contract/ARC.js +27 -9
  55. package/dist/ts/ts/Contract/ArcRun.d.ts +6 -0
  56. package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -1
  57. package/dist/ts/ts/Contract/ArcRun.js +131 -4
  58. package/dist/ts/ts/Contract/ArcWorkflow.d.ts +3 -0
  59. package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -1
  60. package/dist/ts/ts/Contract/ArcWorkflow.js +70 -4
  61. package/dist/ts/ts/Contract/Datamap.d.ts +25 -25
  62. package/dist/ts/ts/Contract/Datamap.js +34 -34
  63. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  64. package/dist/ts/ts/ContractIO/ContractIO.js +3 -1
  65. package/dist/ts/ts/Conversion/Assay.d.ts +13 -0
  66. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -0
  67. package/dist/ts/ts/Conversion/Assay.js +69 -0
  68. package/dist/ts/ts/Conversion/Basic.d.ts +105 -0
  69. package/dist/ts/ts/Conversion/Basic.d.ts.map +1 -0
  70. package/dist/ts/ts/Conversion/Basic.js +452 -0
  71. package/dist/ts/ts/Conversion/ColumnIndex.d.ts +11 -0
  72. package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -0
  73. package/dist/ts/ts/Conversion/ColumnIndex.js +71 -0
  74. package/dist/ts/ts/Conversion/Datamap.d.ts +11 -0
  75. package/dist/ts/ts/Conversion/Datamap.d.ts.map +1 -0
  76. package/dist/ts/ts/Conversion/Datamap.js +21 -0
  77. package/dist/ts/ts/Conversion/DateTime.d.ts +4 -0
  78. package/dist/ts/ts/Conversion/DateTime.d.ts.map +1 -0
  79. package/dist/ts/ts/Conversion/DateTime.js +23 -0
  80. package/dist/ts/ts/Conversion/Investigation.d.ts +12 -0
  81. package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -0
  82. package/dist/ts/ts/Conversion/Investigation.js +79 -0
  83. package/dist/ts/ts/Conversion/Person.d.ts +16 -0
  84. package/dist/ts/ts/Conversion/Person.d.ts.map +1 -0
  85. package/dist/ts/ts/Conversion/Person.js +100 -0
  86. package/dist/ts/ts/Conversion/Process.d.ts +84 -0
  87. package/dist/ts/ts/Conversion/Process.d.ts.map +1 -0
  88. package/dist/ts/ts/Conversion/Process.js +455 -0
  89. package/dist/ts/ts/Conversion/Run.d.ts +35 -0
  90. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -0
  91. package/dist/ts/ts/Conversion/Run.js +254 -0
  92. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts +16 -0
  93. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -0
  94. package/dist/ts/ts/Conversion/ScholarlyArticle.js +116 -0
  95. package/dist/ts/ts/Conversion/Study.d.ts +12 -0
  96. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -0
  97. package/dist/ts/ts/Conversion/Study.js +51 -0
  98. package/dist/ts/ts/Conversion/Table.d.ts +45 -0
  99. package/dist/ts/ts/Conversion/Table.d.ts.map +1 -0
  100. package/dist/ts/ts/Conversion/Table.js +203 -0
  101. package/dist/ts/ts/Conversion/Workflow.d.ts +91 -0
  102. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -0
  103. package/dist/ts/ts/Conversion/Workflow.js +455 -0
  104. package/dist/ts/ts/Conversion.d.ts +25 -276
  105. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  106. package/dist/ts/ts/Conversion.js +64 -1477
  107. package/dist/ts/ts/Core/ArcTypes.d.ts +69 -59
  108. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  109. package/dist/ts/ts/Core/ArcTypes.js +222 -142
  110. package/dist/ts/ts/Core/{DataMap.d.ts → Datamap.d.ts} +24 -24
  111. package/dist/ts/ts/Core/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  112. package/dist/ts/ts/Core/{DataMap.js → Datamap.js} +36 -36
  113. package/dist/ts/ts/Core/Helper/Identifier.d.ts +24 -0
  114. package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -1
  115. package/dist/ts/ts/Core/Helper/Identifier.js +35 -2
  116. package/dist/ts/ts/Core/Table/ArcTable.d.ts +8 -8
  117. package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -1
  118. package/dist/ts/ts/Core/Table/ArcTable.js +20 -20
  119. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +4 -4
  120. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
  121. package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -27
  122. package/dist/ts/ts/FileSystem/Path.d.ts +22 -0
  123. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
  124. package/dist/ts/ts/FileSystem/Path.js +173 -3
  125. package/dist/ts/ts/Json/Assay.js +5 -5
  126. package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts.map +1 -1
  127. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts → Datamap/Datamap.d.ts} +6 -6
  128. package/dist/ts/ts/Json/{DataMap/DataMap.d.ts.map → Datamap/Datamap.d.ts.map} +1 -1
  129. package/dist/ts/ts/Json/{DataMap/DataMap.js → Datamap/Datamap.js} +2 -2
  130. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts.map +1 -1
  131. package/dist/ts/ts/Json/ROCrate/LDContext.js +21 -11
  132. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +1 -0
  133. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts.map +1 -1
  134. package/dist/ts/ts/Json/ROCrate/LDNode.js +18 -7
  135. package/dist/ts/ts/Json/Run.js +5 -5
  136. package/dist/ts/ts/Json/Study.js +5 -5
  137. package/dist/ts/ts/Json/Workflow.d.ts.map +1 -1
  138. package/dist/ts/ts/Json/Workflow.js +10 -11
  139. package/dist/ts/ts/Json.d.ts +3 -5
  140. package/dist/ts/ts/Json.d.ts.map +1 -1
  141. package/dist/ts/ts/Json.js +4 -10
  142. package/dist/ts/ts/JsonIO/Datamap.d.ts +4 -4
  143. package/dist/ts/ts/JsonIO/Datamap.js +6 -6
  144. package/dist/ts/ts/JsonIO/Investigation.d.ts +0 -6
  145. package/dist/ts/ts/JsonIO/Investigation.d.ts.map +1 -1
  146. package/dist/ts/ts/JsonIO/Investigation.js +2 -21
  147. package/dist/ts/ts/License.js +1 -1
  148. package/dist/ts/ts/ROCrate/LDContext.d.ts.map +1 -1
  149. package/dist/ts/ts/ROCrate/LDContext.js +35 -31
  150. package/dist/ts/ts/ROCrate/LDObject.d.ts +2 -2
  151. package/dist/ts/ts/ROCrate/LDObject.js +2 -2
  152. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.d.ts.map +1 -1
  153. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts +63 -0
  154. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts.map +1 -0
  155. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js +361 -0
  156. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.d.ts +39 -0
  157. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.d.ts.map +1 -0
  158. package/dist/ts/ts/ROCrate/LDTypes/ComputerLanguage.js +219 -0
  159. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.d.ts +43 -0
  160. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.d.ts.map +1 -0
  161. package/dist/ts/ts/ROCrate/LDTypes/CreateAction.js +224 -0
  162. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.d.ts.map +1 -1
  163. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.js +1 -1
  164. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Dataset.d.ts +34 -22
  165. package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts.map +1 -0
  166. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Dataset.js +59 -2
  167. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.d.ts.map +1 -1
  168. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/File.d.ts +10 -4
  169. package/dist/ts/ts/ROCrate/LDTypes/File.d.ts.map +1 -0
  170. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/File.js +34 -1
  171. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.d.ts +59 -0
  172. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.d.ts.map +1 -0
  173. package/dist/ts/ts/ROCrate/LDTypes/FormalParameter.js +344 -0
  174. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProcess.d.ts +2 -0
  175. package/dist/ts/ts/ROCrate/LDTypes/LabProcess.d.ts.map +1 -0
  176. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProcess.js +31 -5
  177. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProtocol.d.ts +6 -2
  178. package/dist/ts/ts/ROCrate/LDTypes/LabProtocol.d.ts.map +1 -0
  179. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/LabProtocol.js +66 -15
  180. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.d.ts.map +1 -1
  181. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.d.ts.map +1 -1
  182. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.d.ts.map +1 -1
  183. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PropertyValue.d.ts +35 -11
  184. package/dist/ts/ts/ROCrate/LDTypes/PropertyValue.d.ts.map +1 -0
  185. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PropertyValue.js +191 -1
  186. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.d.ts.map +1 -1
  187. package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.d.ts.map +1 -1
  188. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.d.ts +46 -0
  189. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.d.ts.map +1 -0
  190. package/dist/ts/ts/ROCrate/LDTypes/SoftwareSourceCode.js +247 -0
  191. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.d.ts +12 -0
  192. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.d.ts.map +1 -0
  193. package/dist/ts/ts/ROCrate/LDTypes/WorkflowInvocation.js +40 -0
  194. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.d.ts +11 -0
  195. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.d.ts.map +1 -0
  196. package/dist/ts/ts/ROCrate/LDTypes/WorkflowProtocol.js +46 -0
  197. package/dist/ts/ts/ROCrate/ROCrateContext.d.ts +2 -2
  198. package/dist/ts/ts/ROCrate/ROCrateContext.d.ts.map +1 -1
  199. package/dist/ts/ts/ROCrate/ROCrateContext.js +6 -6
  200. package/dist/ts/ts/ROCrateIO.d.ts +7 -3
  201. package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
  202. package/dist/ts/ts/ROCrateIO.js +82 -13
  203. package/dist/ts/ts/Spreadsheet/ArcAssay.js +3 -3
  204. package/dist/ts/ts/Spreadsheet/ArcRun.js +2 -2
  205. package/dist/ts/ts/Spreadsheet/ArcStudy.js +3 -3
  206. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +2 -2
  207. package/dist/ts/ts/Spreadsheet/Datamap.d.ts +8 -0
  208. package/dist/ts/ts/Spreadsheet/{DataMap.d.ts.map → Datamap.d.ts.map} +1 -1
  209. package/dist/ts/ts/Spreadsheet/{DataMap.js → Datamap.js} +9 -9
  210. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts → DatamapTable/DatamapColumn.d.ts} +1 -1
  211. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts.map → DatamapTable/DatamapColumn.d.ts.map} +1 -1
  212. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.js → DatamapTable/DatamapColumn.js} +1 -1
  213. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts → DatamapTable/DatamapHeader.d.ts} +1 -1
  214. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts.map → DatamapTable/DatamapHeader.d.ts.map} +1 -1
  215. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts → DatamapTable/DatamapTable.d.ts} +5 -5
  216. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts.map → DatamapTable/DatamapTable.d.ts.map} +1 -1
  217. package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.js → DatamapTable/DatamapTable.js} +6 -6
  218. package/dist/ts/ts/Spreadsheet/Metadata/Run.js +1 -1
  219. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.d.ts.map +1 -1
  220. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +4 -4
  221. package/dist/ts/ts/WorkflowGraph/Adapters.d.ts +36 -0
  222. package/dist/ts/ts/WorkflowGraph/Adapters.d.ts.map +1 -0
  223. package/dist/ts/ts/WorkflowGraph/Adapters.js +94 -0
  224. package/dist/ts/ts/WorkflowGraph/BuildOptions.d.ts +37 -0
  225. package/dist/ts/ts/WorkflowGraph/BuildOptions.d.ts.map +1 -0
  226. package/dist/ts/ts/WorkflowGraph/BuildOptions.js +35 -0
  227. package/dist/ts/ts/WorkflowGraph/Builder.d.ts +160 -0
  228. package/dist/ts/ts/WorkflowGraph/Builder.d.ts.map +1 -0
  229. package/dist/ts/ts/WorkflowGraph/Builder.js +556 -0
  230. package/dist/ts/ts/WorkflowGraph/GraphTypes.d.ts +182 -0
  231. package/dist/ts/ts/WorkflowGraph/GraphTypes.d.ts.map +1 -0
  232. package/dist/ts/ts/WorkflowGraph/GraphTypes.js +281 -0
  233. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts +27 -0
  234. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -0
  235. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +49 -0
  236. package/dist/ts/ts/Xlsx.d.ts +5 -5
  237. package/dist/ts/ts/Xlsx.js +1 -1
  238. package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
  239. package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
  240. package/dist/ts/ts/Yaml/ValidationPackage.js +6 -6
  241. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
  242. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
  243. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +6 -6
  244. package/dist/ts/ts/Yaml.d.ts +24 -0
  245. package/dist/ts/ts/Yaml.d.ts.map +1 -0
  246. package/dist/ts/ts/Yaml.js +56 -0
  247. package/dist/ts/ts/fable_modules/DynamicObj.7.1.0/DynObj.fs.js +109 -0
  248. package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.4}/Encode.fs.js +9 -9
  249. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Escapes.fs.js +313 -0
  250. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/FlowToBlock.fs.js +956 -0
  251. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Interop/JsInterop.fs.js +10 -0
  252. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Persil.fs.js +562 -0
  253. package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.4}/Preprocessing.fs.js +52 -12
  254. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Reader.fs.js +1314 -0
  255. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Regex.fs.js +21 -0
  256. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/RegexActivePatterns.fs.js +313 -0
  257. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/StringBuffer.fs.js +60 -0
  258. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/Writer.fs.js +391 -0
  259. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.4/YAMLiciousTypes.fs.js +317 -0
  260. package/package.json +1 -1
  261. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +0 -1
  262. package/dist/ts/ts/ROCrate/Generic/File.d.ts.map +0 -1
  263. package/dist/ts/ts/ROCrate/Generic/LabProcess.d.ts.map +0 -1
  264. package/dist/ts/ts/ROCrate/Generic/LabProtocol.d.ts.map +0 -1
  265. package/dist/ts/ts/ROCrate/Generic/PropertyValue.d.ts.map +0 -1
  266. package/dist/ts/ts/Spreadsheet/DataMap.d.ts +0 -8
  267. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.js +0 -10
  268. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +0 -45
  269. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +0 -483
  270. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.js +0 -11
  271. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +0 -212
  272. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +0 -164
  273. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +0 -152
  274. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.d.ts +0 -0
  275. /package/dist/ts/ts/Json/{DataMap → Datamap}/DataContext.js +0 -0
  276. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.d.ts +0 -0
  277. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Comment.js +0 -0
  278. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/CreativeWork.d.ts +0 -0
  279. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.d.ts +0 -0
  280. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/DefinedTerm.js +0 -0
  281. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.d.ts +0 -0
  282. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Organization.js +0 -0
  283. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.d.ts +0 -0
  284. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Person.js +0 -0
  285. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.d.ts +0 -0
  286. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/PostalAddress.js +0 -0
  287. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.d.ts +0 -0
  288. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/Sample.js +0 -0
  289. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.d.ts +0 -0
  290. /package/dist/ts/ts/ROCrate/{Generic → LDTypes}/ScholarlyArticle.js +0 -0
  291. /package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.js → DatamapTable/DatamapHeader.js} +0 -0
  292. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/DynamicObj.fs.js +0 -0
  293. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/FableJS.fs.js +0 -0
  294. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/HashCodes.fs.js +0 -0
  295. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/PropertyHelper.fs.js +0 -0
  296. /package/dist/ts/ts/fable_modules/{DynamicObj.7.0.1 → DynamicObj.7.1.0}/ReflectionUtils.fs.js +0 -0
  297. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.4}/Decode.fs.js +0 -0
@@ -0,0 +1,103 @@
1
+ import { FSharpChoice$2_$union } from '@fable-org/fable-library-js/Choice.js';
2
+ import { SchemaDefRequirementType, InputEnumSchema, InputRecordSchema, InputRecordField, SoftwarePackage, SchemaSaladString_$union, CWLType_$union, InputArraySchema } from './CWLTypes.js';
3
+ import { Option } from '@fable-org/fable-library-js/Option.js';
4
+ import { FSharpList } from '@fable-org/fable-library-js/List.js';
5
+ import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.4/YAMLiciousTypes.fs.js';
6
+ import { HintEntry_$union, Requirement_$union, EnvironmentDef } from './Requirements.js';
7
+ import { CWLOutput, OutputBinding } from './Outputs.js';
8
+ import { CWLInput, InputBinding } from './Inputs.js';
9
+ import { WorkflowStep, WorkflowStepRun_$union, StepOutput_$union, StepOutputParameter, StepInput, ScatterMethod_$union, PickValueMethod_$union, LinkMergeMethod_$union } from './WorkflowSteps.js';
10
+ import { CWLProcessingUnit_$union } from './CWLProcessingUnit.js';
11
+ import { CWLToolDescription } from './ToolDescription.js';
12
+ import { CWLWorkflowDescription } from './WorkflowDescription.js';
13
+ import { CWLExpressionToolDescription } from './ExpressionToolDescription.js';
14
+ import { CWLOperationDescription } from './OperationDescription.js';
15
+ /**
16
+ * Active pattern to classify CWL types as primitive (with shorthand) or complex (requiring full YAML)
17
+ */
18
+ export declare function $007CPrimitiveType$007CComplexType$007C(t: CWLType_$union): FSharpChoice$2_$union<string, void>;
19
+ /**
20
+ * Try to get shorthand notation for a CWL type (e.g., "File", "string[]", "int[][]")
21
+ * Returns None for complex types that require full YAML serialization
22
+ */
23
+ export declare function tryGetArrayShorthand(cwlType: CWLType_$union): Option<string>;
24
+ /**
25
+ * Determine if a type requires full YAML serialization (complex type)
26
+ */
27
+ export declare function isComplexType(t_mut: CWLType_$union): boolean;
28
+ export declare function yBool(b: boolean): YAMLElement_$union;
29
+ export declare function yMap(pairs: FSharpList<[string, YAMLElement_$union]>): YAMLElement_$union;
30
+ export declare function normalizeDocString(doc: string): string;
31
+ /**
32
+ * Encode expression payloads with style-aware scalars.
33
+ * Single-line expressions are double-quoted to protect JS token syntax.
34
+ * Multi-line expressions are emitted as literal block scalars with clip chomping
35
+ * so trailing newlines and blank lines survive decode/encode roundtrips.
36
+ */
37
+ export declare function encodeExpressionScalar(expression: string): YAMLElement_$union;
38
+ export declare function encodeSchemaSaladString(value: SchemaSaladString_$union): YAMLElement_$union;
39
+ export declare function normalizeEnvValueForEncode(envValue: string): string;
40
+ /**
41
+ * Encode EnvVarRequirement using compact map shorthand (envName -> envValue).
42
+ */
43
+ export declare function encodeEnvVarRequirementCompactMap(envs: EnvironmentDef[]): YAMLElement_$union;
44
+ /**
45
+ * Encode SoftwareRequirement using compact map shorthand.
46
+ */
47
+ export declare function encodeSoftwareRequirementCompactMap(packages: SoftwarePackage[]): YAMLElement_$union;
48
+ export declare function encodeLabel(label: string): [string, YAMLElement_$union];
49
+ export declare function encodeDoc(doc: string): [string, YAMLElement_$union];
50
+ export declare function encodeIntent(intent: string[]): [string, YAMLElement_$union];
51
+ export declare function encodeCWLType(t: CWLType_$union): YAMLElement_$union;
52
+ export declare function encodeInputRecordField(field: InputRecordField): [string, YAMLElement_$union];
53
+ export declare function encodeInputRecordSchema(schema: InputRecordSchema): YAMLElement_$union;
54
+ export declare function encodeInputEnumSchema(schema: InputEnumSchema): YAMLElement_$union;
55
+ export declare function encodeInputArraySchema(schema: InputArraySchema): YAMLElement_$union;
56
+ export declare function encodeOutputBinding(ob: OutputBinding): YAMLElement_$union;
57
+ export declare function encodeStringArrayOrScalar(values: string[]): YAMLElement_$union;
58
+ export declare function encodeCWLOutput(o: CWLOutput): [string, YAMLElement_$union];
59
+ export declare function encodeInputBinding(ib: InputBinding): YAMLElement_$union;
60
+ export declare function encodeCWLInput(i: CWLInput): [string, YAMLElement_$union];
61
+ export declare function encodeSchemaDefRequirementType(s: SchemaDefRequirementType): YAMLElement_$union;
62
+ export declare function encodeRequirement(r: Requirement_$union): YAMLElement_$union;
63
+ export declare function encodeHintEntry(hint: HintEntry_$union): YAMLElement_$union;
64
+ /**
65
+ * Encode a ResizeArray<string> as either a single string or a sequence
66
+ */
67
+ export declare function encodeSourceArray(sources: string[]): YAMLElement_$union;
68
+ export declare function encodeLinkMergeMethod(linkMerge: LinkMergeMethod_$union): YAMLElement_$union;
69
+ export declare function encodePickValueMethod(pickValue: PickValueMethod_$union): YAMLElement_$union;
70
+ export declare function encodeScatterMethod(scatterMethod: ScatterMethod_$union): YAMLElement_$union;
71
+ export declare function encodeStepInput(si: StepInput): [string, YAMLElement_$union];
72
+ export declare function encodeStepInputs(inputs: StepInput[]): YAMLElement_$union;
73
+ export declare function encodeStepOutputParameter(so: StepOutputParameter): YAMLElement_$union;
74
+ export declare function encodeStepOutputs(outputs: StepOutput_$union[]): YAMLElement_$union;
75
+ export declare function encodeScatter(scatter: string[]): YAMLElement_$union;
76
+ export declare function encodeWorkflowStepRun(run: WorkflowStepRun_$union): YAMLElement_$union;
77
+ export declare function encodeToolDescriptionElement(td: CWLToolDescription): YAMLElement_$union;
78
+ export declare function encodeExpressionToolDescriptionElement(et: CWLExpressionToolDescription): YAMLElement_$union;
79
+ export declare function encodeOperationDescriptionElement(op: CWLOperationDescription): YAMLElement_$union;
80
+ export declare function encodeWorkflowDescriptionElement(wd: CWLWorkflowDescription): YAMLElement_$union;
81
+ export declare function encodeWorkflowStep(ws: WorkflowStep): [string, YAMLElement_$union];
82
+ export declare function writeYaml(element: YAMLElement_$union): string;
83
+ export declare function getObjectPairs(element: YAMLElement_$union): FSharpList<[string, YAMLElement_$union]>;
84
+ export declare function renderTopLevelElement(baseKeys: FSharpList<string>, orderedSectionKeys: FSharpList<string>, element: YAMLElement_$union): string;
85
+ export declare function encodeToolDescription(td: CWLToolDescription): string;
86
+ export declare function encodeWorkflowDescription(wd: CWLWorkflowDescription): string;
87
+ export declare function encodeExpressionToolDescription(et: CWLExpressionToolDescription): string;
88
+ export declare function encodeOperationDescription(op: CWLOperationDescription): string;
89
+ export declare function encodeProcessingUnit(pu: CWLProcessingUnit_$union): string;
90
+ /**
91
+ * Encode a CWLType to a single-line YAML string using flow/inline style
92
+ * This produces YAML that doesn't contain newlines and can be embedded in JSON
93
+ */
94
+ export declare function encodeCWLTypeYaml(t: CWLType_$union): string;
95
+ export declare function encodeInputRecordFieldYaml(field: InputRecordField): string;
96
+ export declare function encodeInputRecordSchemaYaml(schema: InputRecordSchema): string;
97
+ export declare function encodeInputEnumSchemaYaml(schema: InputEnumSchema): string;
98
+ export declare function encodeInputArraySchemaYaml(schema: InputArraySchema): string;
99
+ /**
100
+ * Convert a CWLType to a YAML-formatted string for use in serialization
101
+ */
102
+ export declare function cwlTypeToYamlString(t: CWLType_$union): string;
103
+ //# sourceMappingURL=Encode.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Encode.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/Encode.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,qBAAqB,EAAwD,MAAM,uCAAuC,CAAC;AACpI,OAAO,EAAmC,wBAAwB,EAAE,eAAe,EAAE,iBAAiB,EAAE,gBAAgB,EAAkB,eAAe,EAAE,wBAAwB,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,eAAe,CAAC;AAC7O,OAAO,EAAmC,MAAM,EAAO,MAAM,uCAAuC,CAAC;AAGrG,OAAO,EAA6J,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC5N,OAAO,EAAgL,kBAAkB,EAAmD,MAAM,iEAAiE,CAAC;AAGpU,OAAO,EAAE,gBAAgB,EAAE,kBAAkB,EAAgQ,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvV,OAAO,EAAE,SAAS,EAAqC,aAAa,EAAE,MAAM,cAAc,CAAC;AAC3F,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAGrD,OAAO,EAAE,YAAY,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,SAAS,EAAE,oBAAoB,EAAE,sBAAsB,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AACnM,OAAO,EAAE,wBAAwB,EAAiJ,MAAM,wBAAwB,CAAC;AACjN,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAClE,OAAO,EAAE,4BAA4B,EAAE,MAAM,gCAAgC,CAAC;AAC9E,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAC;AAKpE;;GAEG;AACH,wBAAgB,uCAAuC,CAAC,CAAC,EAAE,cAAc,GAAG,qBAAqB,CAAC,MAAM,EAAE,IAAI,CAAC,CAsC9G;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,cAAc,GAAG,MAAM,CAAC,MAAM,CAAC,CA+B5E;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,cAAc,GAAG,OAAO,CA+D5D;AAED,wBAAgB,KAAK,CAAC,CAAC,EAAE,OAAO,GAAG,kBAAkB,CAEpD;AAED,wBAAgB,IAAI,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC,GAAG,kBAAkB,CAKxF;AAED,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED;;;;;GAKG;AACH,wBAAgB,sBAAsB,CAAC,UAAU,EAAE,MAAM,GAAG,kBAAkB,CAG7E;AAED,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,wBAAwB,GAAG,kBAAkB,CAS3F;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAOnE;AAED;;GAEG;AACH,wBAAgB,iCAAiC,CAAC,IAAI,EAAE,cAAc,EAAE,GAAG,kBAAkB,CAG5F;AAED;;GAEG;AACH,wBAAgB,mCAAmC,CAAC,QAAQ,EAAE,eAAe,EAAE,GAAG,kBAAkB,CAMnG;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAEvE;AAED,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAEnE;AAED,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAE3E;AAED,wBAAgB,aAAa,CAAC,CAAC,EAAE,cAAc,GAAG,kBAAkB,CAqHnE;AAED,wBAAgB,sBAAsB,CAAC,KAAK,EAAE,gBAAgB,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAE5F;AAED,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,iBAAiB,GAAG,kBAAkB,CAKrF;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,eAAe,GAAG,kBAAkB,CAEjF;AAED,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,gBAAgB,GAAG,kBAAkB,CAEnF;AAED,wBAAgB,mBAAmB,CAAC,EAAE,EAAE,aAAa,GAAG,kBAAkB,CAEzE;AAED,wBAAgB,yBAAyB,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,kBAAkB,CAO9E;AAED,wBAAgB,eAAe,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA2K1E;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,kBAAkB,CAGvE;AAED,wBAAgB,cAAc,CAAC,CAAC,EAAE,QAAQ,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA0IxE;AAED,wBAAgB,8BAA8B,CAAC,CAAC,EAAE,wBAAwB,GAAG,kBAAkB,CAE9F;AAED,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,kBAAkB,GAAG,kBAAkB,CA4J3E;AAED,wBAAgB,eAAe,CAAC,IAAI,EAAE,gBAAgB,GAAG,kBAAkB,CAO1E;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,kBAAkB,CAOvE;AAED,wBAAgB,qBAAqB,CAAC,SAAS,EAAE,sBAAsB,GAAG,kBAAkB,CAE3F;AAED,wBAAgB,qBAAqB,CAAC,SAAS,EAAE,sBAAsB,GAAG,kBAAkB,CAE3F;AAED,wBAAgB,mBAAmB,CAAC,aAAa,EAAE,oBAAoB,GAAG,kBAAkB,CAE3F;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA0D3E;AAED,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,GAAG,kBAAkB,CAExE;AAED,wBAAgB,yBAAyB,CAAC,EAAE,EAAE,mBAAmB,GAAG,kBAAkB,CAErF;AAED,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,iBAAiB,EAAE,GAAG,kBAAkB,CASlF;AAED,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,kBAAkB,CAOnE;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,sBAAsB,GAAG,kBAAkB,CA6CrF;AAED,wBAAgB,4BAA4B,CAAC,EAAE,EAAE,kBAAkB,GAAG,kBAAkB,CAyFvF;AAED,wBAAgB,sCAAsC,CAAC,EAAE,EAAE,4BAA4B,GAAG,kBAAkB,CAkE3G;AAED,wBAAgB,iCAAiC,CAAC,EAAE,EAAE,uBAAuB,GAAG,kBAAkB,CA2CjG;AAED,wBAAgB,gCAAgC,CAAC,EAAE,EAAE,sBAAsB,GAAG,kBAAkB,CA2C/F;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAsEjF;AAED,wBAAgB,SAAS,CAAC,OAAO,EAAE,kBAAkB,GAAG,MAAM,CAE7D;AAED,wBAAgB,cAAc,CAAC,OAAO,EAAE,kBAAkB,GAAG,UAAU,CAAC,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC,CAcpG;AAED,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,kBAAkB,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,kBAAkB,GAAG,MAAM,CAwD/I;AAED,wBAAgB,qBAAqB,CAAC,EAAE,EAAE,kBAAkB,GAAG,MAAM,CAEpE;AAED,wBAAgB,yBAAyB,CAAC,EAAE,EAAE,sBAAsB,GAAG,MAAM,CAE5E;AAED,wBAAgB,+BAA+B,CAAC,EAAE,EAAE,4BAA4B,GAAG,MAAM,CAExF;AAED,wBAAgB,0BAA0B,CAAC,EAAE,EAAE,uBAAuB,GAAG,MAAM,CAE9E;AAED,wBAAgB,oBAAoB,CAAC,EAAE,EAAE,wBAAwB,GAAG,MAAM,CAWzE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,cAAc,GAAG,MAAM,CAiB3D;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,gBAAgB,GAAG,MAAM,CAE1E;AAED,wBAAgB,2BAA2B,CAAC,MAAM,EAAE,iBAAiB,GAAG,MAAM,CA+B7E;AAED,wBAAgB,yBAAyB,CAAC,MAAM,EAAE,eAAe,GAAG,MAAM,CAEzE;AAED,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,gBAAgB,GAAG,MAAM,CAE3E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,CAAC,EAAE,cAAc,GAAG,MAAM,CAE7D"}