@nfdi4plants/arctrl 3.0.0-beta.9 → 3.0.1

package/dist/ts/ts/Core/ArcTypes.js

@@ -25,7 +25,7 @@ class ArcAssay extends ArcTables {
     this["measurementType@136"] = measurementType;
     this["technologyType@137"] = technologyType;
     this["technologyPlatform@138"] = technologyPlatform;
-    this.dataMap = datamap;
+    this["datamap@139"] = datamap;
     this["performers@140-1"] = performers_1;
     this["comments@141-1"] = comments_1;
     this.staticHash = 0;
@@ -86,13 +86,13 @@ class ArcAssay extends ArcTables {
     const this$ = this;
     this$["technologyPlatform@138"] = n;
   }
-  get DataMap() {
+  get Datamap() {
     const this$ = this;
-    return unwrap(this$.dataMap);
+    return unwrap(this$["datamap@139"]);
   }
-  set DataMap(n) {
+  set Datamap(n) {
     const this$ = this;
-    this$.dataMap = n;
+    this$["datamap@139"] = n;
   }
   get Performers() {
     const this$ = this;
@@ -371,7 +371,7 @@ class ArcAssay extends ArcTables {
     const this$ = this;
     const nextTables = ResizeArray_map((c) => c.Copy(), this$.Tables);
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
-    const nextDataMap = map((d) => d.Copy(), this$.DataMap);
+    const nextDatamap = map((d) => d.Copy(), this$.Datamap);
     const nextPerformers = ResizeArray_map((c_2) => c_2.Copy(), this$.Performers);
     const identifier = this$.Identifier;
     const title = this$.Title;
@@ -379,7 +379,7 @@ class ArcAssay extends ArcTables {
     const measurementType = this$.MeasurementType;
     const technologyType = this$.TechnologyType;
     const technologyPlatform = this$.TechnologyPlatform;
-    return ArcAssay.make(identifier, title, description, measurementType, technologyType, technologyPlatform, nextTables, nextDataMap, nextPerformers, nextComments);
+    return ArcAssay.make(identifier, title, description, measurementType, technologyType, technologyPlatform, nextTables, nextDatamap, nextPerformers, nextComments);
   }
   UpdateBy(assay, onlyReplaceExisting, appendSequences) {
     const this$ = this;
@@ -567,7 +567,7 @@ class ArcAssay extends ArcTables {
     if (assay.Comments.length !== 0 ? true : updateAlways) {
       this$.Comments = assay.Comments;
     }
-    this$.DataMap = assay.DataMap;
+    this$.Datamap = assay.Datamap;
     if (assay.Performers.length !== 0 ? true : updateAlways) {
       this$.Performers = assay.Performers;
     }
@@ -575,7 +575,7 @@ class ArcAssay extends ArcTables {
   StructurallyEquals(other) {
     let a, b, a_1, b_1, a_2, b_2;
     const this$ = this;
-    return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.MeasurementType, other.MeasurementType), equals(this$.TechnologyType, other.TechnologyType), equals(this$.TechnologyPlatform, other.TechnologyPlatform), equals(this$.DataMap, other.DataMap), (a = this$.Tables, b = other.Tables, length(a) === length(b) && fold((acc, e) => {
+    return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.MeasurementType, other.MeasurementType), equals(this$.TechnologyType, other.TechnologyType), equals(this$.TechnologyPlatform, other.TechnologyPlatform), equals(this$.Datamap, other.Datamap), (a = this$.Tables, b = other.Tables, length(a) === length(b) && fold((acc, e) => {
       if (acc) {
         return e;
       } else {
@@ -610,13 +610,13 @@ class ArcAssay extends ArcTables {
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashOption(this$.DataMap), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashOption(this$.Datamap), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
   }
 }
 function ArcAssay_$reflection() {
   return class_type("ARCtrl.ArcAssay", void 0, ArcAssay, ArcTables_$reflection());
 }
-function ArcAssay_$ctor_11E1F34(identifier, title, description, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
+function ArcAssay_$ctor_Z69B192EC(identifier, title, description, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
   return new ArcAssay(identifier, title, description, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments);
 }
 class ArcStudy extends ArcTables {
@@ -714,11 +714,11 @@ class ArcStudy extends ArcTables {
     const this$ = this;
     this$["studyDesignDescriptors@590-1"] = n;
   }
-  get DataMap() {
+  get Datamap() {
     const this$ = this;
     return unwrap(this$["datamap@591"]);
   }
-  set DataMap(n) {
+  set Datamap(n) {
     const this$ = this;
     this$["datamap@591"] = n;
   }
@@ -1152,14 +1152,14 @@ class ArcStudy extends ArcTables {
     const nextContacts = ResizeArray_map((c_1) => c_1.Copy(), this$.Contacts);
     const nextPublications = ResizeArray_map((c_2) => c_2.Copy(), this$.Publications);
     const nextStudyDesignDescriptors = ResizeArray_map((c_3) => c_3.Copy(), this$.StudyDesignDescriptors);
-    const nextDataMap = map((d) => d.Copy(), this$.DataMap);
+    const nextDatamap = map((d) => d.Copy(), this$.Datamap);
     let study;
     const identifier = this$.Identifier;
     const title = this$.Title;
     const description = this$.Description;
     const submissionDate = this$.SubmissionDate;
     const publicReleaseDate = this$.PublicReleaseDate;
-    study = ArcStudy.make(identifier, title, description, submissionDate, publicReleaseDate, nextPublications, nextContacts, nextStudyDesignDescriptors, nextTables, nextDataMap, nextAssayIdentifiers, nextComments);
+    study = ArcStudy.make(identifier, title, description, submissionDate, publicReleaseDate, nextPublications, nextContacts, nextStudyDesignDescriptors, nextTables, nextDatamap, nextAssayIdentifiers, nextComments);
     if (copyInvestigationRef_1) {
       study.Investigation = this$.Investigation;
     }
@@ -1193,7 +1193,7 @@ class ArcStudy extends ArcTables {
       const tables = ArcTables.updateReferenceTablesBySheets(new ArcTables(this$.Tables), new ArcTables(study.Tables), unwrap(keepUnusedRefTables));
       this$.Tables = tables.Tables;
     }
-    this$.DataMap = study.DataMap;
+    this$.Datamap = study.Datamap;
     if (study.RegisteredAssayIdentifiers.length !== 0 ? true : updateAlways) {
       this$.RegisteredAssayIdentifiers = study.RegisteredAssayIdentifiers;
     }
@@ -1204,7 +1204,7 @@ class ArcStudy extends ArcTables {
   StructurallyEquals(other) {
     let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4, a_5, b_5;
     const this$ = this;
-    return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.SubmissionDate, other.SubmissionDate), equals(this$.PublicReleaseDate, other.PublicReleaseDate), equals(this$.DataMap, other.DataMap), (a = this$.Publications, b = other.Publications, length(a) === length(b) && fold((acc, e) => {
+    return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.SubmissionDate, other.SubmissionDate), equals(this$.PublicReleaseDate, other.PublicReleaseDate), equals(this$.Datamap, other.Datamap), (a = this$.Publications, b = other.Publications, length(a) === length(b) && fold((acc, e) => {
       if (acc) {
         return e;
       } else {
@@ -1268,7 +1268,7 @@ class ArcStudy extends ArcTables {
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashOption(this$.DataMap), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.StudyDesignDescriptors), boxHashSeq(this$.Tables), boxHashSeq(this$.RegisteredAssayIdentifiers), boxHashSeq(this$.Comments)]) | 0;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashOption(this$.Datamap), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.StudyDesignDescriptors), boxHashSeq(this$.Tables), boxHashSeq(this$.RegisteredAssayIdentifiers), boxHashSeq(this$.Comments)]) | 0;
   }
   GetLightHashCode() {
     const this$ = this;
@@ -1278,11 +1278,11 @@ class ArcStudy extends ArcTables {
 function ArcStudy_$reflection() {
   return class_type("ARCtrl.ArcStudy", void 0, ArcStudy, ArcTables_$reflection());
 }
-function ArcStudy_$ctor_64321D5B(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
+function ArcStudy_$ctor_Z273F64C5(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
   return new ArcStudy(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments);
 }
 class ArcWorkflow {
-  constructor(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
+  constructor(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, cwlDescription, comments) {
     let identifier_1;
     this["identifier@1151"] = (identifier_1 = identifier.trim(), checkValidCharacters(identifier_1), identifier_1);
     this.investigation = void 0;
@@ -1294,9 +1294,10 @@ class ArcWorkflow {
     this["version@1161"] = version;
     this["parameters@1162"] = defaultArg(parameters, []);
     this["components@1163"] = defaultArg(components, []);
-    this.dataMap = datamap;
+    this["datamap@1164"] = datamap;
     this["contacts@1165"] = defaultArg(contacts, []);
-    this["comments@1166"] = defaultArg(comments, []);
+    this["cwlDescription@1166"] = cwlDescription;
+    this["comments@1167"] = defaultArg(comments, []);
     this.staticHash = 0;
   }
   get Identifier() {
@@ -1379,13 +1380,13 @@ class ArcWorkflow {
     const this$ = this;
     this$["components@1163"] = c;
   }
-  get DataMap() {
+  get Datamap() {
     const this$ = this;
-    return unwrap(this$.dataMap);
+    return unwrap(this$["datamap@1164"]);
   }
-  set DataMap(dm) {
+  set Datamap(dm) {
     const this$ = this;
-    this$.dataMap = dm;
+    this$["datamap@1164"] = dm;
   }
   get Contacts() {
     const this$ = this;
@@ -1395,13 +1396,21 @@ class ArcWorkflow {
     const this$ = this;
     this$["contacts@1165"] = c;
   }
+  get CWLDescription() {
+    const this$ = this;
+    return unwrap(this$["cwlDescription@1166"]);
+  }
+  set CWLDescription(c) {
+    const this$ = this;
+    this$["cwlDescription@1166"] = c;
+  }
   get Comments() {
     const this$ = this;
-    return this$["comments@1166"];
+    return this$["comments@1167"];
   }
   set Comments(c) {
     const this$ = this;
-    this$["comments@1166"] = c;
+    this$["comments@1167"] = c;
   }
   get StaticHash() {
     const this$ = this;
@@ -1414,11 +1423,11 @@ class ArcWorkflow {
   static init(identifier) {
     return new ArcWorkflow(identifier);
   }
-  static create(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
-    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), unwrap(subWorkflowIdentifiers), unwrap(parameters), unwrap(components), unwrap(datamap), unwrap(contacts), unwrap(comments));
+  static create(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, cwlDescription, comments) {
+    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), unwrap(subWorkflowIdentifiers), unwrap(parameters), unwrap(components), unwrap(datamap), unwrap(contacts), unwrap(cwlDescription), unwrap(comments));
   }
-  static make(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
-    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), subWorkflowIdentifiers, parameters, components, unwrap(datamap), contacts, comments);
+  static make(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, cwlDescription, comments) {
+    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), subWorkflowIdentifiers, parameters, components, unwrap(datamap), contacts, unwrap(cwlDescription), comments);
   }
   static get FileName() {
     return "isa.run.xlsx";
@@ -1575,7 +1584,7 @@ class ArcWorkflow {
     const nextSubWorkflowIdentifiers = Array.from(this$.SubWorkflowIdentifiers);
     const nextParameters = ResizeArray_map((x) => x, this$.Parameters);
     const nextComponents = ResizeArray_map((x_1) => x_1, this$.Components);
-    const nextDataMap = map((d) => d.Copy(), this$.DataMap);
+    const nextDatamap = map((d) => d.Copy(), this$.Datamap);
     const nextContacts = ResizeArray_map((c) => c.Copy(), this$.Contacts);
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
     let workflow;
@@ -1584,7 +1593,8 @@ class ArcWorkflow {
     const description = this$.Description;
     const uri = this$.URI;
     const version = this$.Version;
-    workflow = ArcWorkflow.make(identifier, title, description, nextWorkFlowType, uri, version, nextSubWorkflowIdentifiers, nextParameters, nextComponents, nextDataMap, nextContacts, nextComments);
+    const cwlDescription = this$.CWLDescription;
+    workflow = ArcWorkflow.make(identifier, title, description, nextWorkFlowType, uri, version, nextSubWorkflowIdentifiers, nextParameters, nextComponents, nextDatamap, nextContacts, cwlDescription, nextComments);
     if (copyInvestigationRef_1) {
       workflow.Investigation = this$.Investigation;
     }
@@ -1611,13 +1621,13 @@ class ArcWorkflow {
       } else {
         return false;
       }
-    }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), equals(this$.DataMap, other.DataMap), (a_3 = this$.Contacts, b_3 = other.Contacts, length(a_3) === length(b_3) && fold((acc_3, e_3) => {
+    }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), equals(this$.Datamap, other.Datamap), (a_3 = this$.Contacts, b_3 = other.Contacts, length(a_3) === length(b_3) && fold((acc_3, e_3) => {
       if (acc_3) {
         return e_3;
       } else {
         return false;
       }
-    }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1)))))), (a_4 = this$.Comments, b_4 = other.Comments, length(a_4) === length(b_4) && fold((acc_4, e_4) => {
+    }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1)))))), equals(this$.CWLDescription, other.CWLDescription), (a_4 = this$.Comments, b_4 = other.Comments, length(a_4) === length(b_4) && fold((acc_4, e_4) => {
       if (acc_4) {
         return e_4;
       } else {
@@ -1640,10 +1650,10 @@ class ArcWorkflow {
     const arg_6 = this$.SubWorkflowIdentifiers;
     const arg_7 = this$.Parameters;
     const arg_8 = this$.Components;
-    const arg_9 = this$.DataMap;
+    const arg_9 = this$.Datamap;
     const arg_10 = this$.Contacts;
     const arg_11 = this$.Comments;
-    return toText(printf("ArcWorkflow {\r\n    Identifier = %A,\r\n    Title = %A,\r\n    Description = %A,\r\n    WorkflowType = %A,\r\n    URI = %A,\r\n    Version = %A,\r\n    SubWorkflowIdentifiers = %A,\r\n    Parameters = %A,\r\n    Components = %A,\r\n    DataMap = %A,\r\n    Contacts = %A,\r\n    Comments = %A}"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10)(arg_11);
+    return toText(printf("ArcWorkflow {\r\n    Identifier = %A,\r\n    Title = %A,\r\n    Description = %A,\r\n    WorkflowType = %A,\r\n    URI = %A,\r\n    Version = %A,\r\n    SubWorkflowIdentifiers = %A,\r\n    Parameters = %A,\r\n    Components = %A,\r\n    Datamap = %A,\r\n    Contacts = %A,\r\n    Comments = %A}"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10)(arg_11);
   }
   Equals(other) {
     let s;
@@ -1652,7 +1662,7 @@ class ArcWorkflow {
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashOption(this$.DataMap), boxHashSeq(this$.Contacts), boxHashSeq(this$.Comments)]) | 0;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashOption(this$.Datamap), boxHashSeq(this$.Contacts), boxHashOption(this$.CWLDescription), boxHashSeq(this$.Comments)]) | 0;
   }
   GetLightHashCode() {
     const this$ = this;
@@ -1662,36 +1672,39 @@ class ArcWorkflow {
 function ArcWorkflow_$reflection() {
   return class_type("ARCtrl.ArcWorkflow", void 0, ArcWorkflow);
 }
-function ArcWorkflow_$ctor_Z3BB02240(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
-  return new ArcWorkflow(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments);
+function ArcWorkflow_$ctor_Z5FF2D3D5(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, cwlDescription, comments) {
+  return new ArcWorkflow(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, cwlDescription, comments);
 }
 class ArcRun extends ArcTables {
-  constructor(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, comments) {
+  constructor(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, cwlDescription, cwlInput, comments) {
     super(defaultArg(tables, []));
     let identifier_1;
     const performers_1 = defaultArg(performers, []);
     const comments_1 = defaultArg(comments, []);
     const workflowIdentifiers_1 = defaultArg(workflowIdentifiers, []);
-    this["identifier@1447"] = (identifier_1 = identifier.trim(), checkValidCharacters(identifier_1), identifier_1);
-    this["title@1451"] = title;
-    this["description@1452"] = description;
+    const cwlInput_1 = defaultArg(cwlInput, []);
+    this["identifier@1453"] = (identifier_1 = identifier.trim(), checkValidCharacters(identifier_1), identifier_1);
+    this["title@1457"] = title;
+    this["description@1458"] = description;
     this.investigation = void 0;
-    this["measurementType@1454"] = measurementType;
-    this["technologyType@1455"] = technologyType;
-    this["technologyPlatform@1456"] = technologyPlatform;
-    this["workflowIdentifiers@1457-1"] = workflowIdentifiers_1;
-    this.dataMap = datamap;
-    this["performers@1459-1"] = performers_1;
-    this["comments@1460-1"] = comments_1;
+    this["measurementType@1460"] = measurementType;
+    this["technologyType@1461"] = technologyType;
+    this["technologyPlatform@1462"] = technologyPlatform;
+    this["workflowIdentifiers@1463-1"] = workflowIdentifiers_1;
+    this["datamap@1464"] = datamap;
+    this["performers@1465-1"] = performers_1;
+    this["cwlDescription@1466"] = cwlDescription;
+    this["cwlInput@1467-1"] = cwlInput_1;
+    this["comments@1468-1"] = comments_1;
     this.staticHash = 0;
   }
   get Identifier() {
     const this$ = this;
-    return this$["identifier@1447"];
+    return this$["identifier@1453"];
   }
   set Identifier(i) {
     const this$ = this;
-    this$["identifier@1447"] = i;
+    this$["identifier@1453"] = i;
   }
   get Investigation() {
     const this$ = this;
@@ -1703,75 +1716,91 @@ class ArcRun extends ArcTables {
   }
   get Title() {
     const this$ = this;
-    return unwrap(this$["title@1451"]);
+    return unwrap(this$["title@1457"]);
   }
   set Title(t) {
     const this$ = this;
-    this$["title@1451"] = t;
+    this$["title@1457"] = t;
   }
   get Description() {
     const this$ = this;
-    return unwrap(this$["description@1452"]);
+    return unwrap(this$["description@1458"]);
   }
   set Description(d) {
     const this$ = this;
-    this$["description@1452"] = d;
+    this$["description@1458"] = d;
   }
   get MeasurementType() {
     const this$ = this;
-    return unwrap(this$["measurementType@1454"]);
+    return unwrap(this$["measurementType@1460"]);
   }
   set MeasurementType(n) {
     const this$ = this;
-    this$["measurementType@1454"] = n;
+    this$["measurementType@1460"] = n;
   }
   get TechnologyType() {
     const this$ = this;
-    return unwrap(this$["technologyType@1455"]);
+    return unwrap(this$["technologyType@1461"]);
   }
   set TechnologyType(n) {
     const this$ = this;
-    this$["technologyType@1455"] = n;
+    this$["technologyType@1461"] = n;
   }
   get TechnologyPlatform() {
     const this$ = this;
-    return unwrap(this$["technologyPlatform@1456"]);
+    return unwrap(this$["technologyPlatform@1462"]);
   }
   set TechnologyPlatform(n) {
     const this$ = this;
-    this$["technologyPlatform@1456"] = n;
+    this$["technologyPlatform@1462"] = n;
   }
   get WorkflowIdentifiers() {
     const this$ = this;
-    return this$["workflowIdentifiers@1457-1"];
+    return this$["workflowIdentifiers@1463-1"];
   }
   set WorkflowIdentifiers(w) {
     const this$ = this;
-    this$["workflowIdentifiers@1457-1"] = w;
+    this$["workflowIdentifiers@1463-1"] = w;
   }
-  get DataMap() {
+  get Datamap() {
     const this$ = this;
-    return unwrap(this$.dataMap);
+    return unwrap(this$["datamap@1464"]);
   }
-  set DataMap(n) {
+  set Datamap(n) {
     const this$ = this;
-    this$.dataMap = n;
+    this$["datamap@1464"] = n;
   }
   get Performers() {
     const this$ = this;
-    return this$["performers@1459-1"];
+    return this$["performers@1465-1"];
   }
   set Performers(n) {
     const this$ = this;
-    this$["performers@1459-1"] = n;
+    this$["performers@1465-1"] = n;
+  }
+  get CWLDescription() {
+    const this$ = this;
+    return unwrap(this$["cwlDescription@1466"]);
+  }
+  set CWLDescription(n) {
+    const this$ = this;
+    this$["cwlDescription@1466"] = n;
+  }
+  get CWLInput() {
+    const this$ = this;
+    return this$["cwlInput@1467-1"];
+  }
+  set CWLInput(n) {
+    const this$ = this;
+    this$["cwlInput@1467-1"] = n;
   }
   get Comments() {
     const this$ = this;
-    return this$["comments@1460-1"];
+    return this$["comments@1468-1"];
   }
   set Comments(n) {
     const this$ = this;
-    this$["comments@1460-1"] = n;
+    this$["comments@1468-1"] = n;
   }
   get StaticHash() {
     const this$ = this;
@@ -1784,11 +1813,11 @@ class ArcRun extends ArcTables {
   static init(identifier) {
     return new ArcRun(identifier);
   }
-  static create(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, comments) {
-    return new ArcRun(identifier, unwrap(title), unwrap(description), unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), unwrap(workflowIdentifiers), unwrap(tables), unwrap(datamap), unwrap(performers), unwrap(comments));
+  static create(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, cwlDescription, cwlInput, comments) {
+    return new ArcRun(identifier, unwrap(title), unwrap(description), unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), unwrap(workflowIdentifiers), unwrap(tables), unwrap(datamap), unwrap(performers), unwrap(cwlDescription), unwrap(cwlInput), unwrap(comments));
   }
-  static make(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, comments) {
-    return new ArcRun(identifier, unwrap(title), unwrap(description), unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), workflowIdentifiers, tables, unwrap(datamap), performers, comments);
+  static make(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, cwlDescription, cwlInput, comments) {
+    return new ArcRun(identifier, unwrap(title), unwrap(description), unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), workflowIdentifiers, tables, unwrap(datamap), performers, unwrap(cwlDescription), cwlInput, comments);
   }
   static get FileName() {
     return "isa.run.xlsx";
@@ -2050,7 +2079,7 @@ class ArcRun extends ArcTables {
     const this$ = this;
     const nextTables = ResizeArray_map((c) => c.Copy(), this$.Tables);
     const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
-    const nextDataMap = map((d) => d.Copy(), this$.DataMap);
+    const nextDatamap = map((d) => d.Copy(), this$.Datamap);
     const nextPerformers = ResizeArray_map((c_2) => c_2.Copy(), this$.Performers);
     const nextWorkflowIdentifiers = ResizeArray_map((c_3) => c_3, this$.WorkflowIdentifiers);
     const identifier = this$.Identifier;
@@ -2059,7 +2088,9 @@ class ArcRun extends ArcTables {
     const measurementType = this$.MeasurementType;
     const technologyType = this$.TechnologyType;
     const technologyPlatform = this$.TechnologyPlatform;
-    return ArcRun.make(identifier, title, description, measurementType, technologyType, technologyPlatform, nextWorkflowIdentifiers, nextTables, nextDataMap, nextPerformers, nextComments);
+    const cwlDescription = this$.CWLDescription;
+    const cwlInput = this$.CWLInput;
+    return ArcRun.make(identifier, title, description, measurementType, technologyType, technologyPlatform, nextWorkflowIdentifiers, nextTables, nextDatamap, nextPerformers, cwlDescription, cwlInput, nextComments);
   }
   UpdateBy(run, onlyReplaceExisting, appendSequences) {
     const this$ = this;
@@ -2121,8 +2152,8 @@ class ArcRun extends ArcTables {
       }
       this$.WorkflowIdentifiers = s;
     }
-    if (run.DataMap != null ? true : updateAlways) {
-      this$.DataMap = run.DataMap;
+    if (run.Datamap != null ? true : updateAlways) {
+      this$.Datamap = run.Datamap;
     }
     if (run.Tables.length !== 0 ? true : updateAlways) {
       let s_1;
@@ -2204,10 +2235,13 @@ class ArcRun extends ArcTables {
       }
       this$.Performers = s_2;
     }
-    if (run.Comments.length !== 0 ? true : updateAlways) {
+    if (run.CWLDescription != null ? true : updateAlways) {
+      this$.CWLDescription = run.CWLDescription;
+    }
+    if (run.CWLInput.length !== 0 ? true : updateAlways) {
       let s_3;
-      const origin_3 = this$.Comments;
-      const next_3 = run.Comments;
+      const origin_3 = this$.CWLInput;
+      const next_3 = run.CWLInput;
       if (!appendSequences_1) {
         s_3 = ResizeArray_map((x_9) => x_9, next_3);
       } else {
@@ -2242,7 +2276,47 @@ class ArcRun extends ArcTables {
         }
         s_3 = combined_3;
       }
-      this$.Comments = s_3;
+      this$.CWLInput = s_3;
+    }
+    if (run.Comments.length !== 0 ? true : updateAlways) {
+      let s_4;
+      const origin_4 = this$.Comments;
+      const next_4 = run.Comments;
+      if (!appendSequences_1) {
+        s_4 = ResizeArray_map((x_12) => x_12, next_4);
+      } else {
+        const combined_4 = [];
+        let enumerator_5 = getEnumerator(origin_4);
+        try {
+          while (enumerator_5["System.Collections.IEnumerator.MoveNext"]()) {
+            const e_5 = enumerator_5["System.Collections.Generic.IEnumerator`1.get_Current"]();
+            if (!contains$1(e_5, combined_4, {
+              Equals: equals,
+              GetHashCode: safeHash
+            })) {
+              void combined_4.push(e_5);
+            }
+          }
+        } finally {
+          disposeSafe(enumerator_5);
+        }
+        let enumerator_1_4 = getEnumerator(next_4);
+        try {
+          while (enumerator_1_4["System.Collections.IEnumerator.MoveNext"]()) {
+            const e_1_4 = enumerator_1_4["System.Collections.Generic.IEnumerator`1.get_Current"]();
+            if (!contains$1(e_1_4, combined_4, {
+              Equals: equals,
+              GetHashCode: safeHash
+            })) {
+              void combined_4.push(e_1_4);
+            }
+          }
+        } finally {
+          disposeSafe(enumerator_1_4);
+        }
+        s_4 = combined_4;
+      }
+      this$.Comments = s_4;
     }
   }
   toString() {
@@ -2254,11 +2328,11 @@ class ArcRun extends ArcTables {
     const arg_4 = this$.TechnologyType;
     const arg_5 = this$.TechnologyPlatform;
     const arg_6 = this$.WorkflowIdentifiers;
-    const arg_7 = this$.DataMap;
+    const arg_7 = this$.Datamap;
     const arg_8 = this$.Tables;
     const arg_9 = this$.Performers;
     const arg_10 = this$.Comments;
-    return toText(printf('ArcRun({\r\n    Identifier = "%s",\r\n    Title = %A,\r\n    Description = %A,\r\n    MeasurementType = %A,\r\n    TechnologyType = %A,\r\n    TechnologyPlatform = %A,\r\n    WorkflowIdentifiers = %A,\r\n    DataMap = %A,\r\n    Tables = %A,\r\n    Performers = %A,\r\n    Comments = %A\r\n})'))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10);
+    return toText(printf('ArcRun({\r\n    Identifier = "%s",\r\n    Title = %A,\r\n    Description = %A,\r\n    MeasurementType = %A,\r\n    TechnologyType = %A,\r\n    TechnologyPlatform = %A,\r\n    WorkflowIdentifiers = %A,\r\n    Datamap = %A,\r\n    Tables = %A,\r\n    Performers = %A,\r\n    Comments = %A\r\n})'))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10);
   }
   AddToInvestigation(investigation) {
     const this$ = this;
@@ -2269,7 +2343,7 @@ class ArcRun extends ArcTables {
     this$.Investigation = void 0;
   }
   StructurallyEquals(other) {
-    let a, b, a_1, b_1, a_2, b_2, a_3, b_3;
+    let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4;
     const this$ = this;
     return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.MeasurementType, other.MeasurementType), equals(this$.TechnologyType, other.TechnologyType), equals(this$.TechnologyPlatform, other.TechnologyPlatform), (a = this$.WorkflowIdentifiers, b = other.WorkflowIdentifiers, length(a) === length(b) && fold((acc, e) => {
       if (acc) {
@@ -2277,7 +2351,7 @@ class ArcRun extends ArcTables {
       } else {
         return false;
       }
-    }, true, toList(delay(() => map$1((i_1) => item(i_1, a) === item(i_1, b), rangeDouble(0, 1, length(a) - 1)))))), equals(this$.DataMap, other.DataMap), (a_1 = this$.Tables, b_1 = other.Tables, length(a_1) === length(b_1) && fold((acc_1, e_1) => {
+    }, true, toList(delay(() => map$1((i_1) => item(i_1, a) === item(i_1, b), rangeDouble(0, 1, length(a) - 1)))))), equals(this$.Datamap, other.Datamap), (a_1 = this$.Tables, b_1 = other.Tables, length(a_1) === length(b_1) && fold((acc_1, e_1) => {
       if (acc_1) {
         return e_1;
       } else {
@@ -2289,13 +2363,19 @@ class ArcRun extends ArcTables {
       } else {
         return false;
       }
-    }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), (a_3 = this$.Comments, b_3 = other.Comments, length(a_3) === length(b_3) && fold((acc_3, e_3) => {
+    }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), equals(this$.CWLDescription, other.CWLDescription), (a_3 = this$.CWLInput, b_3 = other.CWLInput, length(a_3) === length(b_3) && fold((acc_3, e_3) => {
       if (acc_3) {
         return e_3;
       } else {
         return false;
       }
-    }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1))))))]);
+    }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1)))))), (a_4 = this$.Comments, b_4 = other.Comments, length(a_4) === length(b_4) && fold((acc_4, e_4) => {
+      if (acc_4) {
+        return e_4;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_5) => equals(item(i_5, a_4), item(i_5, b_4)), rangeDouble(0, 1, length(a_4) - 1))))))]);
   }
   ReferenceEquals(other) {
     const this$ = this;
@@ -2312,14 +2392,14 @@ class ArcRun extends ArcTables {
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashOption(this$.DataMap), boxHashSeq(this$.WorkflowIdentifiers), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashOption(this$.Datamap), boxHashSeq(this$.WorkflowIdentifiers), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashOption(this$.CWLDescription), boxHashSeq(this$.CWLInput), boxHashSeq(this$.Comments)]) | 0;
   }
 }
 function ArcRun_$reflection() {
   return class_type("ARCtrl.ArcRun", void 0, ArcRun, ArcTables_$reflection());
 }
-function ArcRun_$ctor_Z38E7054B(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, comments) {
-  return new ArcRun(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, comments);
+function ArcRun_$ctor_287C1303(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, cwlDescription, cwlInput, comments) {
+  return new ArcRun(identifier, title, description, measurementType, technologyType, technologyPlatform, workflowIdentifiers, tables, datamap, performers, cwlDescription, cwlInput, comments);
 }
 class ArcInvestigation {
   constructor(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, workflows, runs, registeredStudyIdentifiers, comments, remarks) {
@@ -2379,143 +2459,143 @@ class ArcInvestigation {
     const registeredStudyIdentifiers_1 = defaultArg(registeredStudyIdentifiers, []);
     const comments_1 = defaultArg(comments, []);
     const remarks_1 = defaultArg(remarks, []);
-    this["identifier@1928"] = identifier;
-    this["title@1929"] = title;
-    this["description@1930"] = description;
-    this["submissionDate@1931"] = submissionDate;
-    this["publicReleaseDate@1932"] = publicReleaseDate;
-    this["ontologySourceReferences@1933-1"] = ontologySourceReferences_1;
-    this["publications@1934-1"] = publications_1;
-    this["contacts@1935-1"] = contacts_1;
-    this["assays@1936-1"] = assays_1;
-    this["studies@1937-1"] = studies_1;
-    this["workflows@1938-1"] = workflows_1;
-    this["runs@1939-1"] = runs_1;
-    this["registeredStudyIdentifiers@1940-1"] = registeredStudyIdentifiers_1;
-    this["comments@1941-1"] = comments_1;
-    this["remarks@1942-1"] = remarks_1;
+    this["identifier@1951"] = identifier;
+    this["title@1952"] = title;
+    this["description@1953"] = description;
+    this["submissionDate@1954"] = submissionDate;
+    this["publicReleaseDate@1955"] = publicReleaseDate;
+    this["ontologySourceReferences@1956-1"] = ontologySourceReferences_1;
+    this["publications@1957-1"] = publications_1;
+    this["contacts@1958-1"] = contacts_1;
+    this["assays@1959-1"] = assays_1;
+    this["studies@1960-1"] = studies_1;
+    this["workflows@1961-1"] = workflows_1;
+    this["runs@1962-1"] = runs_1;
+    this["registeredStudyIdentifiers@1963-1"] = registeredStudyIdentifiers_1;
+    this["comments@1964-1"] = comments_1;
+    this["remarks@1965-1"] = remarks_1;
     this.staticHash = 0;
-    this["init@1899"] = 1;
+    this["init@1922"] = 1;
   }
   get Identifier() {
     const this$ = this;
-    return this$["identifier@1928"];
+    return this$["identifier@1951"];
   }
   set Identifier(i) {
     const this$ = this;
-    this$["identifier@1928"] = i;
+    this$["identifier@1951"] = i;
   }
   get Title() {
     const this$ = this;
-    return unwrap(this$["title@1929"]);
+    return unwrap(this$["title@1952"]);
   }
   set Title(n) {
     const this$ = this;
-    this$["title@1929"] = n;
+    this$["title@1952"] = n;
   }
   get Description() {
     const this$ = this;
-    return unwrap(this$["description@1930"]);
+    return unwrap(this$["description@1953"]);
   }
   set Description(n) {
     const this$ = this;
-    this$["description@1930"] = n;
+    this$["description@1953"] = n;
   }
   get SubmissionDate() {
     const this$ = this;
-    return unwrap(this$["submissionDate@1931"]);
+    return unwrap(this$["submissionDate@1954"]);
   }
   set SubmissionDate(n) {
     const this$ = this;
-    this$["submissionDate@1931"] = n;
+    this$["submissionDate@1954"] = n;
   }
   get PublicReleaseDate() {
     const this$ = this;
-    return unwrap(this$["publicReleaseDate@1932"]);
+    return unwrap(this$["publicReleaseDate@1955"]);
   }
   set PublicReleaseDate(n) {
     const this$ = this;
-    this$["publicReleaseDate@1932"] = n;
+    this$["publicReleaseDate@1955"] = n;
   }
   get OntologySourceReferences() {
     const this$ = this;
-    return this$["ontologySourceReferences@1933-1"];
+    return this$["ontologySourceReferences@1956-1"];
   }
   set OntologySourceReferences(n) {
     const this$ = this;
-    this$["ontologySourceReferences@1933-1"] = n;
+    this$["ontologySourceReferences@1956-1"] = n;
   }
   get Publications() {
     const this$ = this;
-    return this$["publications@1934-1"];
+    return this$["publications@1957-1"];
   }
   set Publications(n) {
     const this$ = this;
-    this$["publications@1934-1"] = n;
+    this$["publications@1957-1"] = n;
   }
   get Contacts() {
     const this$ = this;
-    return this$["contacts@1935-1"];
+    return this$["contacts@1958-1"];
   }
   set Contacts(n) {
     const this$ = this;
-    this$["contacts@1935-1"] = n;
+    this$["contacts@1958-1"] = n;
   }
   get Assays() {
     const this$ = this;
-    return this$["assays@1936-1"];
+    return this$["assays@1959-1"];
   }
   set Assays(n) {
     const this$ = this;
-    this$["assays@1936-1"] = n;
+    this$["assays@1959-1"] = n;
   }
   get Studies() {
     const this$ = this;
-    return this$["studies@1937-1"];
+    return this$["studies@1960-1"];
   }
   set Studies(n) {
     const this$ = this;
-    this$["studies@1937-1"] = n;
+    this$["studies@1960-1"] = n;
   }
   get Workflows() {
     const this$ = this;
-    return this$["workflows@1938-1"];
+    return this$["workflows@1961-1"];
   }
   set Workflows(n) {
     const this$ = this;
-    this$["workflows@1938-1"] = n;
+    this$["workflows@1961-1"] = n;
   }
   get Runs() {
     const this$ = this;
-    return this$["runs@1939-1"];
+    return this$["runs@1962-1"];
   }
   set Runs(n) {
     const this$ = this;
-    this$["runs@1939-1"] = n;
+    this$["runs@1962-1"] = n;
   }
   get RegisteredStudyIdentifiers() {
     const this$ = this;
-    return this$["registeredStudyIdentifiers@1940-1"];
+    return this$["registeredStudyIdentifiers@1963-1"];
   }
   set RegisteredStudyIdentifiers(n) {
     const this$ = this;
-    this$["registeredStudyIdentifiers@1940-1"] = n;
+    this$["registeredStudyIdentifiers@1963-1"] = n;
   }
   get Comments() {
     const this$ = this;
-    return this$["comments@1941-1"];
+    return this$["comments@1964-1"];
   }
   set Comments(n) {
     const this$ = this;
-    this$["comments@1941-1"] = n;
+    this$["comments@1964-1"] = n;
   }
   get Remarks() {
     const this$ = this;
-    return this$["remarks@1942-1"];
+    return this$["remarks@1965-1"];
   }
   set Remarks(n) {
     const this$ = this;
-    this$["remarks@1942-1"] = n;
+    this$["remarks@1965-1"] = n;
   }
   get StaticHash() {
     const this$ = this;
@@ -3705,4 +3785,4 @@ function ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier(runIdentifier, investig
   return `Error. Unable to find run with identifier '${runIdentifier}' in investigation ${investigationIdentifier}.`;
 }
 
-export { ArcAssay, ArcAssay_$ctor_11E1F34, ArcAssay_$reflection, ArcInvestigation, ArcInvestigation_$ctor_Z67823F6C, ArcInvestigation_$reflection, ArcRun, ArcRun_$ctor_Z38E7054B, ArcRun_$reflection, ArcStudy, ArcStudy_$ctor_64321D5B, ArcStudy_$reflection, ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier, ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier, ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier, ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier, ArcWorkflow, ArcWorkflow_$ctor_Z3BB02240, ArcWorkflow_$reflection };
+export { ArcAssay, ArcAssay_$ctor_Z69B192EC, ArcAssay_$reflection, ArcInvestigation, ArcInvestigation_$ctor_Z67823F6C, ArcInvestigation_$reflection, ArcRun, ArcRun_$ctor_287C1303, ArcRun_$reflection, ArcStudy, ArcStudy_$ctor_Z273F64C5, ArcStudy_$reflection, ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier, ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier, ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier, ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier, ArcWorkflow, ArcWorkflow_$ctor_Z5FF2D3D5, ArcWorkflow_$reflection };