@nfdi4plants/arctrl 3.0.0-beta.9 → 3.0.1

package/dist/ts/ts/ROCrateIO.d.ts

@@ -1,9 +1,9 @@
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { LDNode } from './ROCrate/LDObject.js';
+import { LDGraph, LDNode } from './ROCrate/LDObject.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
 import { LDContext } from './ROCrate/LDContext.js';
-import { ArcInvestigation } from './Core/ArcTypes.js';
+import { ArcWorkflow, ArcRun, ArcInvestigation } from './Core/ArcTypes.js';
 import { FileSystem } from './FileSystem/FileSystem.js';
 import { Decoder$1, IEncodable } from './fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 export declare class ROCrate {
@@ -11,12 +11,16 @@ export declare class ROCrate {
 }
 export declare function ROCrate_$reflection(): TypeInfo;
 export declare function ROCrate_get_metadataFileDescriptor(): LDNode;
+export declare function ROCrate_get_metadataFileDescriptorWfRun(): LDNode;
 export declare function ROCrate_createLicenseNode_29619109(license: Option<License>): LDNode;
 export declare function ROCrate_getLicense_Z2F770004(license: LDNode, context?: LDContext): Option<License>;
-export declare function ROCrate_encoder_1E8A3F74(isa: ArcInvestigation, license?: License, fs?: FileSystem): IEncodable;
+export declare function ROCrate_encoder_Z7FE34C43(isa: ArcInvestigation, license?: License, fs?: FileSystem, ignoreBrokenWR?: boolean): IEncodable;
 /**
  * Returns ArcInvestigation, list of file Ids, and optional License
  */
 export declare function ROCrate_get_decoder(): Decoder$1<[ArcInvestigation, string[], Option<License>]>;
+export declare function ROCrate_packDatasetAsCrate_Z2DB026F7(dataset: LDNode, datasetName: string, datasetDescription: string, metadataFileDescriptor: Option<LDNode>, license: License): LDGraph;
+export declare function ROCrate_writeRunAsCrate_5E53831D(arcRun: ArcRun, fileSystem: FileSystem, license: License): string;
+export declare function ROCrate_writeWorkflowAsCrate_Z4A0538D9(arcWorkflow: ArcWorkflow, fileSystem: FileSystem, license: License): string;
 export declare function ROCrate_get_decoderDeprecated(): Decoder$1<ArcInvestigation>;
 //# sourceMappingURL=ROCrateIO.d.ts.map

package/dist/ts/ts/ROCrateIO.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ROCrateIO.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/ROCrateIO.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAkB,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAE/D,OAAO,EAAgB,MAAM,EAAoB,MAAM,uCAAuC,CAAC;AAC/F,OAAO,EAAsB,OAAO,EAAE,MAAM,cAAc,CAAC;AAE3D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAMnD,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAC;AAO1F,qBAAa,OAAO;;CAGnB;AAED,wBAAgB,mBAAmB,IAAI,QAAQ,CAE9C;AAED,wBAAgB,kCAAkC,IAAI,MAAM,CAK3D;AAED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAWnF;AAED,wBAAgB,4BAA4B,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,OAAO,CAAC,CAqClG;AAED,wBAAgB,wBAAwB,CAAC,GAAG,EAAE,gBAAgB,EAAE,OAAO,CAAC,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,UAAU,CAW9G;AAED;;GAEG;AACH,wBAAgB,mBAAmB,IAAI,SAAS,CAAC,CAAC,gBAAgB,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAoB9F;AAED,wBAAgB,6BAA6B,IAAI,SAAS,CAAC,gBAAgB,CAAC,CAE3E"}
+{"version":3,"file":"ROCrateIO.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/ROCrateIO.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAA2D,OAAO,EAAS,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAGxH,OAAO,EAA4B,MAAM,EAAoB,MAAM,uCAAuC,CAAC;AAC3G,OAAO,EAAsB,OAAO,EAAE,MAAM,cAAc,CAAC;AAE3D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAMnD,OAAO,EAAE,WAAW,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAC3E,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAC;AAW1F,qBAAa,OAAO;;CAGnB;AAED,wBAAgB,mBAAmB,IAAI,QAAQ,CAE9C;AAED,wBAAgB,kCAAkC,IAAI,MAAM,CAK3D;AAED,wBAAgB,uCAAuC,IAAI,MAAM,CAKhE;AAED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAWnF;AAED,wBAAgB,4BAA4B,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,OAAO,CAAC,CAqClG;AAED,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,gBAAgB,EAAE,OAAO,CAAC,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,cAAc,CAAC,EAAE,OAAO,GAAG,UAAU,CAWzI;AAED;;GAEG;AACH,wBAAgB,mBAAmB,IAAI,SAAS,CAAC,CAAC,gBAAgB,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAoB9F;AAED,wBAAgB,oCAAoC,CAAC,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,sBAAsB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAexL;AAED,wBAAgB,gCAAgC,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,CAqBjH;AAED,wBAAgB,sCAAsC,CAAC,WAAW,EAAE,WAAW,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,CAqBjI;AAED,wBAAgB,6BAA6B,IAAI,SAAS,CAAC,gBAAgB,CAAC,CAE3E"}

package/dist/ts/ts/ROCrateIO.js

@@ -1,18 +1,23 @@
 import { class_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { LDNode, LDRef } from './ROCrate/LDObject.js';
-import { LDCreativeWork } from './ROCrate/Generic/CreativeWork.js';
-import { value, unwrap, bind } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { LDNode, LDRef, DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5 } from './ROCrate/LDObject.js';
+import { ofArray, filter, isEmpty, map as map$1 } from '../node_modules/@fable-org/fable-library-js/List.js';
+import { LDCreativeWork } from './ROCrate/LDTypes/CreativeWork.js';
+import { value, unwrap, bind, defaultArg } from '../node_modules/@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
 import { LDContext } from './ROCrate/LDContext.js';
-import { ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8 } from './Conversion.js';
-import { LDDataset } from './ROCrate/Generic/Dataset.js';
+import { ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C } from './Conversion.js';
+import { LDDataset } from './ROCrate/LDTypes/Dataset.js';
 import { now } from '../node_modules/@fable-org/fable-library-js/Date.js';
-import { initV1_1, initBioschemasContext } from './ROCrate/ROCrateContext.js';
+import { initV1_2, initBioschemasContext, initV1_1 } from './ROCrate/ROCrateContext.js';
 import { encoder, decoder } from './Json/ROCrate/LDGraph.js';
 import { map } from './fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
 import { ResizeArray_choose } from './Core/Helper/Collections.js';
-import { LDFile } from './ROCrate/Generic/File.js';
-import { exactlyOne } from '../node_modules/@fable-org/fable-library-js/Seq.js';
+import { LDFile } from './ROCrate/LDTypes/File.js';
+import { iterate, tryHead, exactlyOne } from '../node_modules/@fable-org/fable-library-js/Seq.js';
+import { join, replace, toFail, printf } from '../node_modules/@fable-org/fable-library-js/String.js';
+import { LDCreateAction } from './ROCrate/LDTypes/CreateAction.js';
+import { ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F } from './JsonIO/LDObject.js';
+import { LDComputationalWorkflow } from './ROCrate/LDTypes/ComputationalWorkflow.js';
 import { decoder as decoder$1 } from './Json/ROCrate/LDNode.js';
 
 class ROCrate {
@@ -24,7 +29,13 @@ function ROCrate_$reflection() {
 }
 function ROCrate_get_metadataFileDescriptor() {
   const node = new LDNode("ro-crate-metadata.json", ["http://schema.org/CreativeWork"]);
-  node.SetProperty("http://purl.org/dc/terms/conformsTo", new LDRef("https://w3id.org/ro/crate/1.1"));
+  node.SetProperty("http://purl.org/dc/terms/conformsTo", new LDRef("https://w3id.org/ro/crate/1.2"));
+  node.SetProperty("http://schema.org/about", new LDRef("./"));
+  return node;
+}
+function ROCrate_get_metadataFileDescriptorWfRun() {
+  const node = new LDNode("ro-crate-metadata.json", ["http://schema.org/CreativeWork"]);
+  node.SetProperty("http://purl.org/dc/terms/conformsTo", ofArray([new LDRef("https://w3id.org/ro/crate/1.1"), new LDRef("https://w3id.org/workflowhub/workflow-ro-crate/1.0")]));
   node.SetProperty("http://schema.org/about", new LDRef("./"));
   return node;
 }
@@ -73,13 +84,13 @@ function ROCrate_getLicense_Z2F770004(license, context) {
       return new License("fulltext", "", path_1);
   }
 }
-function ROCrate_encoder_1E8A3F74(isa, license, fs) {
+function ROCrate_encoder_Z7FE34C43(isa, license, fs, ignoreBrokenWR) {
   const license_1 = ROCrate_createLicenseNode_29619109(license);
-  const isa_1 = ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C(isa, unwrap(fs));
+  const isa_1 = ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(isa, unwrap(fs), unwrap(ignoreBrokenWR));
   LDDataset.setSDDatePublishedAsDateTime(isa_1, now());
   LDDataset.setLicenseAsCreativeWork(isa_1, license_1);
   const graph = isa_1.Flatten();
-  const context = new LDContext(void 0, [initV1_1(), initBioschemasContext()]);
+  const context = new LDContext(void 0, [initV1_2(), initBioschemasContext()]);
   graph.SetContext(context);
   graph.AddNode(ROCrate_get_metadataFileDescriptor());
   graph.Compact_InPlace();
@@ -104,8 +115,66 @@ function ROCrate_get_decoder() {
     }
   }, decoder);
 }
+function ROCrate_packDatasetAsCrate_Z2DB026F7(dataset, datasetName, datasetDescription, metadataFileDescriptor, license) {
+  const metadataFileDescriptor_1 = defaultArg(metadataFileDescriptor, ROCrate_get_metadataFileDescriptor());
+  const license_1 = ROCrate_createLicenseNode_29619109(license);
+  const mainEntity = LDDataset.create("./", void 0, void 0, void 0, void 0, void 0, datasetDescription, void 0, datasetName);
+  iterate((kv) => {
+    mainEntity.SetProperty(kv[0], kv[1]);
+  }, dataset.GetProperties(false));
+  LDDataset.setDateCreatedAsDateTime(mainEntity, now());
+  LDDataset.setLicenseAsCreativeWork(mainEntity, license_1);
+  const graph = mainEntity.Flatten();
+  const context = new LDContext(void 0, [initV1_2(), initBioschemasContext()]);
+  graph.SetContext(context);
+  graph.AddNode(metadataFileDescriptor_1);
+  graph.Compact_InPlace();
+  return graph;
+}
+function ROCrate_writeRunAsCrate_5E53831D(arcRun, fileSystem, license) {
+  const runDataset = ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(arcRun, fileSystem);
+  const missingDatasetProps = filter((prop) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(runDataset, prop), ofArray([LDDataset.identifier, LDDataset.name, LDDataset.description, LDDataset.about, LDDataset.mentions, LDDataset.creator, LDDataset.hasPart]));
+  if (!isEmpty(missingDatasetProps)) {
+    const missingPropsStr = join(", ", map$1((p) => replace(p, "http://schema.org/", ""), missingDatasetProps));
+    toFail(printf("Run dataset is missing required properties: %s"))(missingPropsStr);
+  }
+  let workflowInvocation;
+  const matchValue = tryHead(LDDataset.getAboutsAsWorkflowInvocation(runDataset));
+  if (matchValue == null) {
+    throw new Error("Run dataset 'about' property must contain a workflowInvocation");
+  } else {
+    workflowInvocation = value(matchValue);
+  }
+  const missingWfInvocationProps = filter((prop_1) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowInvocation, prop_1), ofArray([LDCreateAction.name, LDCreateAction.instrument, LDCreateAction.result, LDCreateAction.object_]));
+  if (!isEmpty(missingWfInvocationProps)) {
+    const missingPropsStr_1 = join(", ", map$1((p_1) => replace(p_1, "http://schema.org/", ""), missingWfInvocationProps));
+    toFail(printf("WorkflowInvocation is missing required properties: %s"))(missingPropsStr_1);
+  }
+  return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(2)(ROCrate_packDatasetAsCrate_Z2DB026F7(runDataset, value(arcRun.Title), value(arcRun.Description), ROCrate_get_metadataFileDescriptorWfRun(), license));
+}
+function ROCrate_writeWorkflowAsCrate_Z4A0538D9(arcWorkflow, fileSystem, license) {
+  const workflowDataset = ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C(arcWorkflow, fileSystem);
+  const missingDatasetProps = filter((prop) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowDataset, prop), ofArray([LDDataset.identifier, LDDataset.name, LDDataset.description, LDDataset.mainEntity, LDDataset.hasPart, LDDataset.creator]));
+  if (!isEmpty(missingDatasetProps)) {
+    const missingPropsStr = join(", ", map$1((p) => replace(p, "http://schema.org/", ""), missingDatasetProps));
+    toFail(printf("Workflow dataset is missing required properties: %s"))(missingPropsStr);
+  }
+  let workflowProtocol;
+  const matchValue = LDDataset.tryGetMainEntityAsWorkflowProtocol(workflowDataset);
+  if (matchValue == null) {
+    throw new Error("Workflow dataset 'mainEntity' property must contain a workflow protocol");
+  } else {
+    workflowProtocol = value(matchValue);
+  }
+  const missingProtocolProps = filter((prop_1) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowProtocol, prop_1), ofArray([LDComputationalWorkflow.creator, LDComputationalWorkflow.name, LDComputationalWorkflow.input, LDComputationalWorkflow.output, LDComputationalWorkflow.programmingLanguage, LDComputationalWorkflow.url, LDComputationalWorkflow.version, LDComputationalWorkflow.dateCreated]));
+  if (!isEmpty(missingProtocolProps)) {
+    const missingPropsStr_1 = join(", ", map$1((p_1) => replace(p_1, "http://schema.org/", ""), missingProtocolProps));
+    toFail(printf("Workflow protocol is missing required properties: %s"))(missingPropsStr_1);
+  }
+  return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(2)(ROCrate_packDatasetAsCrate_Z2DB026F7(workflowDataset, value(arcWorkflow.Title), value(arcWorkflow.Description), ROCrate_get_metadataFileDescriptorWfRun(), license));
+}
 function ROCrate_get_decoderDeprecated() {
   return map((ldnode) => ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(exactlyOne(LDDataset.getAbouts(ldnode)), void 0, initV1_1()), decoder$1);
 }
 
-export { ROCrate, ROCrate_$reflection, ROCrate_createLicenseNode_29619109, ROCrate_encoder_1E8A3F74, ROCrate_getLicense_Z2F770004, ROCrate_get_decoder, ROCrate_get_decoderDeprecated, ROCrate_get_metadataFileDescriptor };
+export { ROCrate, ROCrate_$reflection, ROCrate_createLicenseNode_29619109, ROCrate_encoder_Z7FE34C43, ROCrate_getLicense_Z2F770004, ROCrate_get_decoder, ROCrate_get_decoderDeprecated, ROCrate_get_metadataFileDescriptor, ROCrate_get_metadataFileDescriptorWfRun, ROCrate_packDatasetAsCrate_Z2DB026F7, ROCrate_writeRunAsCrate_5E53831D, ROCrate_writeWorkflowAsCrate_Z4A0538D9 };

package/dist/ts/ts/Spreadsheet/ArcAssay.js

@@ -11,7 +11,7 @@ import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWork
 import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
-import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DatamapTable/DatamapTable.js';
 
 function ArcAssay_fromRows(rows) {
   const patternInput = exists((row) => {
@@ -153,7 +153,7 @@ function ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(doc) {
     if (!isEmpty$1(annotationTables)) {
       assayMetadata.Tables = Array.from(annotationTables);
     }
-    assayMetadata.DataMap = datamapSheet;
+    assayMetadata.Datamap = datamapSheet;
     return assayMetadata;
   } catch (err) {
     const arg_2 = err.message;
@@ -169,7 +169,7 @@ function ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay, datamapS
     iterate((arg) => {
       const sheet = toFsWorksheet(arg);
       doc.AddWorksheet(sheet);
-    }, toArray(assay.DataMap));
+    }, toArray(assay.Datamap));
   }
   iterateIndexed((i, arg_1) => {
     const sheet_1 = toFsWorksheet$1(i, arg_1);

package/dist/ts/ts/Spreadsheet/ArcRun.js

@@ -11,7 +11,7 @@ import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWork
 import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { tryFromFsWorksheet, toFsWorksheet } from './AnnotationTable/ArcTable.js';
-import { tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DatamapTable/DatamapTable.js';
 
 function ArcRun_fromRows(rows) {
   const en = getEnumerator(rows);
@@ -124,7 +124,7 @@ function ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D(doc) {
     const sheets = doc.GetWorksheets();
     const annotationTables = choose(tryFromFsWorksheet, sheets);
     const datamapSheet = tryPick(tryFromFsWorksheet$1, sheets);
-    runMetadata.DataMap = datamapSheet;
+    runMetadata.Datamap = datamapSheet;
     if (!isEmpty(annotationTables)) {
       runMetadata.Tables = Array.from(annotationTables);
     }

package/dist/ts/ts/Spreadsheet/ArcStudy.js

@@ -11,7 +11,7 @@ import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { ResizeArray_choose, ResizeArray_isEmpty } from '../Core/Helper/Collections.js';
 import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
-import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DatamapTable/DatamapTable.js';
 
 function ArcStudy_toMetadataSheet(study, assays) {
   let source_1;
@@ -76,7 +76,7 @@ function ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(doc) {
     if (!ResizeArray_isEmpty(annotationTables)) {
       studyMetadata.Tables = annotationTables;
     }
-    studyMetadata.DataMap = datamapSheet;
+    studyMetadata.Datamap = datamapSheet;
     return [studyMetadata, patternInput[1]];
   } catch (err) {
     const arg_2 = err.message;
@@ -92,7 +92,7 @@ function ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, assays,
     iterate((arg) => {
       const sheet = toFsWorksheet(arg);
       doc.AddWorksheet(sheet);
-    }, toArray(study.DataMap));
+    }, toArray(study.Datamap));
   }
   iterateIndexed((i, arg_1) => {
     const sheet_1 = toFsWorksheet$1(i, arg_1);

package/dist/ts/ts/Spreadsheet/ArcWorkflow.js

@@ -10,7 +10,7 @@ import { delay, append, singleton, iterateIndexed, map, tryFind, tryPick } from
 import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
 import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
-import { tryFromFsWorksheet } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet } from './DatamapTable/DatamapTable.js';
 
 function ArcWorkflow_fromRows(rows) {
   const en = getEnumerator(rows);
@@ -121,7 +121,7 @@ function ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D(doc) {
       workflowMetadata = ArcWorkflow_fromMetadataSheet(value(matchValue));
     }
     const datamapSheet = tryPick(tryFromFsWorksheet, doc.GetWorksheets());
-    workflowMetadata.DataMap = datamapSheet;
+    workflowMetadata.Datamap = datamapSheet;
     return workflowMetadata;
   } catch (err) {
     const arg_1 = err.message;

package/dist/ts/ts/Spreadsheet/Datamap.d.ts

@@ -0,0 +1,8 @@
+import { Datamap } from '../Core/Datamap.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
+/**
+ * Reads an datamap from a spreadsheet
+ */
+export declare function fromFsWorkbook(doc: FsWorkbook): Datamap;
+export declare function toFsWorkbook(datamap: Datamap): FsWorkbook;
+//# sourceMappingURL=Datamap.d.ts.map

package/dist/ts/ts/Spreadsheet/{DataMap.d.ts.map → Datamap.d.ts.map}

@@ -1 +1 @@
-{"version":3,"file":"DataMap.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Spreadsheet/DataMap.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,+DAA+D,CAAC;AAE3F;;GAEG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,UAAU,GAAG,OAAO,CAoBvD;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU,CAKzD"}
+{"version":3,"file":"Datamap.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Spreadsheet/Datamap.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,+DAA+D,CAAC;AAE3F;;GAEG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,UAAU,GAAG,OAAO,CAoBvD;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU,CAKzD"}

package/dist/ts/ts/Spreadsheet/{DataMap.js → Datamap.js}

@@ -1,31 +1,31 @@
 import { toFail, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { tryPick, forAll } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { tryFromFsWorksheet, toFsWorksheet } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet, toFsWorksheet } from './DatamapTable/DatamapTable.js';
 import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { DataMap } from '../Core/DataMap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 
 function fromFsWorkbook(doc) {
   try {
     const worksheets = doc.GetWorksheets();
-    const dataMapTable = tryPick(tryFromFsWorksheet, worksheets);
-    if (dataMapTable == null) {
+    const datamapTable = tryPick(tryFromFsWorksheet, worksheets);
+    if (datamapTable == null) {
       if (forAll((sheet) => sheet.CellCollection.Count === 0, worksheets)) {
-        return DataMap.init();
+        return Datamap.init();
       } else {
-        throw new Error("No DataMapTable was found in any of the sheets of the workbook");
+        throw new Error("No DatamapTable was found in any of the sheets of the workbook");
       }
     } else {
-      return value(dataMapTable);
+      return value(datamapTable);
     }
   } catch (err) {
     const arg = err.message;
     return toFail(printf("Could not parse datamap: \n%s"))(arg);
   }
 }
-function toFsWorkbook(dataMap) {
+function toFsWorkbook(datamap) {
   const doc = new FsWorkbook();
-  const sheet = toFsWorksheet(dataMap);
+  const sheet = toFsWorksheet(datamap);
   doc.AddWorksheet(sheet);
   return doc;
 }

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts → DatamapTable/DatamapColumn.d.ts}

@@ -4,4 +4,4 @@ import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/Fs
 import { DataContext } from '../../Core/DataContext.js';
 export declare function setFromFsColumns(dc: DataContext[], columns: FSharpList<FsColumn>): DataContext[];
 export declare function toFsColumns(dc: DataContext[]): FSharpList<FSharpList<FsCell>>;
-//# sourceMappingURL=DataMapColumn.d.ts.map
+//# sourceMappingURL=DatamapColumn.d.ts.map

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.d.ts.map → DatamapTable/DatamapColumn.d.ts.map}

@@ -1 +1 @@
-{"version":3,"file":"DataMapColumn.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DataMapTable/DataMapColumn.ts"],"names":[],"mappings":"AACA,OAAO,EAAiC,UAAU,EAAO,MAAM,qCAAqC,CAAC;AACrG,OAAO,EAAE,QAAQ,EAAE,MAAM,gEAAgE,CAAC;AAC1F,OAAO,EAAE,MAAM,EAAE,MAAM,oEAAoE,CAAC;AAC5F,OAAO,EAAwK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AAS9N,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,WAAW,EAAE,EAAE,OAAO,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,WAAW,EAAE,CAMhG;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,WAAW,EAAE,GAAG,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAuB7E"}
+{"version":3,"file":"DatamapColumn.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DatamapTable/DatamapColumn.ts"],"names":[],"mappings":"AACA,OAAO,EAAiC,UAAU,EAAO,MAAM,qCAAqC,CAAC;AACrG,OAAO,EAAE,QAAQ,EAAE,MAAM,gEAAgE,CAAC;AAC1F,OAAO,EAAE,MAAM,EAAE,MAAM,oEAAoE,CAAC;AAC5F,OAAO,EAAwK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AAS9N,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,WAAW,EAAE,EAAE,OAAO,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,WAAW,EAAE,CAMhG;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,WAAW,EAAE,GAAG,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAuB7E"}

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapColumn.js → DatamapTable/DatamapColumn.js}

@@ -1,4 +1,4 @@
-import { fromFsCells, toFsCells } from './DataMapHeader.js';
+import { fromFsCells, toFsCells } from './DatamapHeader.js';
 import { map, ofArray, singleton, transpose } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
 import { DataContext__get_Explication, DataContext__get_Unit, DataContext__get_ObjectType, DataContext__get_Description, DataContext__get_GeneratedBy, DataContext__get_Label } from '../../Core/DataContext.js';

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts → DatamapTable/DatamapHeader.d.ts}

@@ -20,4 +20,4 @@ export declare function ActivePattern_$007CComment$007C_$007C(cells: FSharpList<
 export declare function ActivePattern_$007CFreetext$007C_$007C(cells: FSharpList<FsCell>): Option<((arg0: DataContext) => ((arg0: FSharpList<FsCell>) => DataContext))>;
 export declare function fromFsCells(cells: FSharpList<FsCell>): ((arg0: DataContext) => ((arg0: FSharpList<FsCell>) => DataContext));
 export declare function toFsCells(commentKeys: FSharpList<string>): FSharpList<FsCell>;
-//# sourceMappingURL=DataMapHeader.d.ts.map
+//# sourceMappingURL=DatamapHeader.d.ts.map

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapHeader.d.ts.map → DatamapTable/DatamapHeader.d.ts.map}

@@ -1 +1 @@
-{"version":3,"file":"DataMapHeader.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DataMapTable/DataMapHeader.ts"],"names":[],"mappings":"AAAA,OAAO,EAA2C,UAAU,EAAO,MAAM,qCAAqC,CAAC;AAC/G,OAAO,EAAE,MAAM,EAAE,MAAM,oEAAoE,CAAC;AAC5F,OAAO,EAAiB,MAAM,EAAgB,MAAM,uCAAuC,CAAC;AAC5F,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,IAAI,EAAE,MAAM,oBAAoB,CAAC;AAC1C,OAAO,EAAuL,WAAW,EAAyC,MAAM,2BAA2B,CAAC;AAOpR,wBAAgB,2CAA2C,CAAC,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,kBAAkB,CAKvJ;AAED,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAEnF;AAED,wBAAgB,6BAA6B,CAAC,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,IAAI,CAKnI;AAED,wBAAgB,kCAAkC,CAAC,cAAc,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,kBAAkB,CAAC,CAAC,CA6IhK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAYjK;AAED,wBAAgB,kCAAkC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAY1J;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAYhK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4BjK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4BjK;AAED,wBAAgB,mCAAmC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4B3J;AAED,wBAAgB,kCAAkC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4B1J;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA+B7J;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAyB9J;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CA8E3H;AAED,wBAAgB,SAAS,CAAC,WAAW,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,UAAU,CAAC,MAAM,CAAC,CAE7E"}
+{"version":3,"file":"DatamapHeader.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DatamapTable/DatamapHeader.ts"],"names":[],"mappings":"AAAA,OAAO,EAA2C,UAAU,EAAO,MAAM,qCAAqC,CAAC;AAC/G,OAAO,EAAE,MAAM,EAAE,MAAM,oEAAoE,CAAC;AAC5F,OAAO,EAAiB,MAAM,EAAgB,MAAM,uCAAuC,CAAC;AAC5F,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtE,OAAO,EAAE,IAAI,EAAE,MAAM,oBAAoB,CAAC;AAC1C,OAAO,EAAuL,WAAW,EAAyC,MAAM,2BAA2B,CAAC;AAOpR,wBAAgB,2CAA2C,CAAC,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,kBAAkB,CAKvJ;AAED,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAEnF;AAED,wBAAgB,6BAA6B,CAAC,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,IAAI,CAKnI;AAED,wBAAgB,kCAAkC,CAAC,cAAc,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,kBAAkB,CAAC,CAAC,CA6IhK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAYjK;AAED,wBAAgB,kCAAkC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAY1J;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAYhK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4BjK;AAED,wBAAgB,yCAAyC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4BjK;AAED,wBAAgB,mCAAmC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4B3J;AAED,wBAAgB,kCAAkC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA4B1J;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CA+B7J;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,CAyB9J;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,MAAM,CAAC,KAAK,WAAW,CAAC,CAAC,CA8E3H;AAED,wBAAgB,SAAS,CAAC,WAAW,EAAE,UAAU,CAAC,MAAM,CAAC,GAAG,UAAU,CAAC,MAAM,CAAC,CAE7E"}

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts → DatamapTable/DatamapTable.d.ts}

@@ -4,13 +4,13 @@ import { FsTable } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/
 import { FsWorksheet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { DataContext } from '../../Core/DataContext.js';
-import { DataMap } from '../../Core/DataMap.js';
+import { Datamap } from '../../Core/Datamap.js';
 export declare const helperColumnStrings: FSharpList<string>;
 export declare function groupColumnsByHeader(columns: FSharpList<FsColumn>): FSharpList<FSharpList<FsColumn>>;
 /**
  * Returns the annotation table of the worksheet if it exists, else returns None
  */
-export declare function tryDataMapTable(sheet: FsWorksheet): Option<FsTable>;
+export declare function tryDatamapTable(sheet: FsWorksheet): Option<FsTable>;
 /**
  * Groups and parses a collection of single columns into the according ISA composite columns
  */
@@ -18,6 +18,6 @@ export declare function composeColumns(columns: Iterable<FsColumn>): DataContext
 /**
  * Returns the protocol described by the headers and a function for parsing the values of the matrix to the processes of this protocol
  */
-export declare function tryFromFsWorksheet(sheet: FsWorksheet): Option<DataMap>;
-export declare function toFsWorksheet(table: DataMap): FsWorksheet;
-//# sourceMappingURL=DataMapTable.d.ts.map
+export declare function tryFromFsWorksheet(sheet: FsWorksheet): Option<Datamap>;
+export declare function toFsWorksheet(table: Datamap): FsWorksheet;
+//# sourceMappingURL=DatamapTable.d.ts.map

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.d.ts.map → DatamapTable/DatamapTable.d.ts.map}

@@ -1 +1 @@
-{"version":3,"file":"DataMapTable.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DataMapTable/DataMapTable.ts"],"names":[],"mappings":"AAAA,OAAO,EAAiD,UAAU,EAAW,MAAM,qCAAqC,CAAC;AAEzH,OAAO,EAAE,QAAQ,EAAE,MAAM,gEAAgE,CAAC;AAE1F,OAAO,EAAE,OAAO,EAAE,MAAM,sEAAsE,CAAC;AAC/F,OAAO,EAAE,WAAW,EAAE,MAAM,mEAAmE,CAAC;AAChG,OAAO,EAAoB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEjF,OAAO,EAAE,WAAW,EAA+B,MAAM,2BAA2B,CAAC;AAIrF,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAQhD,eAAO,MAAM,mBAAmB,EAAE,UAAU,CAAC,MAAM,CAAgG,CAAC;AAEpJ,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,UAAU,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAKpG;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,GAAG,MAAM,CAAC,OAAO,CAAC,CAEnE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,QAAQ,CAAC,QAAQ,CAAC,GAAG,WAAW,EAAE,CAOzE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,WAAW,GAAG,MAAM,CAAC,OAAO,CAAC,CAgBtE;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,OAAO,GAAG,WAAW,CAqCzD"}
+{"version":3,"file":"DatamapTable.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/DatamapTable/DatamapTable.ts"],"names":[],"mappings":"AAAA,OAAO,EAAiD,UAAU,EAAW,MAAM,qCAAqC,CAAC;AAEzH,OAAO,EAAE,QAAQ,EAAE,MAAM,gEAAgE,CAAC;AAE1F,OAAO,EAAE,OAAO,EAAE,MAAM,sEAAsE,CAAC;AAC/F,OAAO,EAAE,WAAW,EAAE,MAAM,mEAAmE,CAAC;AAChG,OAAO,EAAoB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEjF,OAAO,EAAE,WAAW,EAA+B,MAAM,2BAA2B,CAAC;AAIrF,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAQhD,eAAO,MAAM,mBAAmB,EAAE,UAAU,CAAC,MAAM,CAAgG,CAAC;AAEpJ,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,UAAU,CAAC,QAAQ,CAAC,GAAG,UAAU,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAKpG;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,GAAG,MAAM,CAAC,OAAO,CAAC,CAEnE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,QAAQ,CAAC,QAAQ,CAAC,GAAG,WAAW,EAAE,CAOzE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,WAAW,GAAG,MAAM,CAAC,OAAO,CAAC,CAgBtE;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,OAAO,GAAG,WAAW,CAqCzD"}

package/dist/ts/ts/Spreadsheet/{DataMapTable/DataMapTable.js → DatamapTable/DatamapTable.js}

@@ -5,9 +5,9 @@ import { FsWorksheet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsW
 import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { DataContext_$ctor_Z780A8A2A } from '../../Core/DataContext.js';
 import { rangeDouble } from '../../../node_modules/@fable-org/fable-library-js/Range.js';
-import { setFromFsColumns, toFsColumns } from './DataMapColumn.js';
+import { setFromFsColumns, toFsColumns } from './DatamapColumn.js';
 import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
-import { DataMap } from '../../Core/DataMap.js';
+import { Datamap } from '../../Core/Datamap.js';
 import { FsRangeAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js';
 import { FsAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js';
 import { Dictionary_tryGet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js';
@@ -20,7 +20,7 @@ function groupColumnsByHeader(columns) {
     return !exists((s) => v.startsWith(s), helperColumnStrings);
   }, columns);
 }
-function tryDataMapTable(sheet) {
+function tryDatamapTable(sheet) {
   return tryFind((t) => t.Name.startsWith("datamapTable"), sheet.Tables);
 }
 function composeColumns(columns) {
@@ -33,12 +33,12 @@ function composeColumns(columns) {
 }
 function tryFromFsWorksheet(sheet) {
   try {
-    const matchValue = tryDataMapTable(sheet);
+    const matchValue = tryDatamapTable(sheet);
     if (matchValue == null) {
       return void 0;
     } else {
       const t = value(matchValue);
-      return new DataMap(composeColumns(t.GetColumns(sheet.CellCollection)));
+      return new Datamap(composeColumns(t.GetColumns(sheet.CellCollection)));
     }
   } catch (err) {
     const arg = sheet.Name;
@@ -82,4 +82,4 @@ function toFsWorksheet(table) {
   }
 }
 
-export { composeColumns, groupColumnsByHeader, helperColumnStrings, toFsWorksheet, tryDataMapTable, tryFromFsWorksheet };
+export { composeColumns, groupColumnsByHeader, helperColumnStrings, toFsWorksheet, tryDatamapTable, tryFromFsWorksheet };

package/dist/ts/ts/Spreadsheet/Metadata/Run.js

@@ -38,7 +38,7 @@ function fromString(identifier, title, description, workflowIdentifiers, measure
   const measurementType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), measurementType_1);
   const technologyType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), technologyType_1);
   const technologyPlatform_1 = map(JsonTypes_decomposeTechnologyPlatform, technologyPlatform);
-  return ArcRun.make(identifier_4, title, description, measurementType_2, technologyType_2, technologyPlatform_1, workflowIdentifiers_1, [], void 0, [], comments);
+  return ArcRun.make(identifier_4, title, description, measurementType_2, technologyType_2, technologyPlatform_1, workflowIdentifiers_1, [], void 0, [], void 0, [], comments);
 }
 function fromSparseTable(matrix) {
   let comments;

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Spreadsheet/Metadata/Workflow.ts"],"names":[],"mappings":"AAAA,OAAO,EAA6C,UAAU,EAAW,MAAM,qCAAqC,CAAC;AACrH,OAAO,EAAsB,MAAM,EAAS,MAAM,uCAAuC,CAAC;AAO1F,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AAEzD,OAAO,EAA6F,WAAW,EAA+E,MAAM,kBAAkB,CAAC;AACvN,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAI7D,OAAO,EAAE,WAAW,EAAc,MAAM,qCAAqC,CAAC;AAE9E,eAAO,MAAM,eAAe,eAAe,CAAC;AAE5C,eAAO,MAAM,UAAU,UAAU,CAAC;AAElC,eAAO,MAAM,gBAAgB,gBAAgB,CAAC;AAE9C,eAAO,MAAM,iBAAiB,SAAS,CAAC;AAExC,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,sBAAsB,yBAAyB,CAAC;AAE7D,eAAO,MAAM,2BAA2B,6BAA6B,CAAC;AAEtE,eAAO,MAAM,QAAQ,QAAQ,CAAC;AAE9B,eAAO,MAAM,YAAY,YAAY,CAAC;AAEtC,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,kCAAkC,qCAAqC,CAAC;AAErF,eAAO,MAAM,4BAA4B,+BAA+B,CAAC;AAEzE,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD,eAAO,MAAM,sCAAsC,0CAA0C,CAAC;AAE9F,eAAO,MAAM,gCAAgC,oCAAoC,CAAC;AAElF,eAAO,MAAM,aAAa,cAAc,CAAC;AAEzC,eAAO,MAAM,MAAM,EAAE,UAAU,CAAC,MAAM,CAAoZ,CAAC;AAE3b,wBAAgB,UAAU,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,WAAW,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,+BAA+B,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,yBAAyB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,sBAAsB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,cAAc,EAAE,MAAM,EAAE,6BAA6B,EAAE,MAAM,EAAE,uBAAuB,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,iCAAiC,EAAE,MAAM,EAAE,2BAA2B,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,WAAW,CAiCtlB;AAED,wBAAgB,eAAe,CAAC,MAAM,EAAE,WAAW,GAAG,WAAW,CAGhE;AAED,wBAAgB,aAAa,CAAC,QAAQ,EAAE,WAAW,GAAG,WAAW,CAqChE;AAED,wBAAgB,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,CAGlJ;AAED,wBAAgB,MAAM,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAEjF"}

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js

@@ -3,7 +3,7 @@ import { value, unwrap, defaultArg } from '../../../node_modules/@fable-org/fabl
 import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
-import { ProtocolParameter_fromAggregatedStrings, Component_fromAggregatedStrings, ProtocolParameter_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
+import { OntologyAnnotation_fromAggregatedStrings, Component_fromAggregatedStrings, OntologyAnnotation_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
 import { createMissingIdentifier, Workflow_tryIdentifierFromFileName, Workflow_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { ArcWorkflow } from '../../Core/ArcTypes.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
@@ -44,7 +44,7 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
   const v = OntologyAnnotation.create(unwrap(workflowType), unwrap(workflowTypeTermSourceREF), unwrap(workflowTypeTermAccessionNumber));
   workflowType_1 = Option_fromValueWithDefault(new OntologyAnnotation(), v);
   let parameters;
-  const collection_1 = ProtocolParameter_fromAggregatedStrings(";", parametersName, parametersTermSourceREF, parametersTermAccessionNumber);
+  const collection_1 = OntologyAnnotation_fromAggregatedStrings(";", parametersName, parametersTermSourceREF, parametersTermAccessionNumber);
   parameters = Array.from(collection_1);
   let components;
   const collection_2 = Component_fromAggregatedStrings(";", componentsName, componentsType, componentsTypeTermSourceREF, componentsTypeTermAccessionNumber);
@@ -60,7 +60,7 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
   } else {
     identifier_4 = value(identifier);
   }
-  return ArcWorkflow.make(identifier_4, title, description, workflowType_1, uri, version, subworkflowIdentifiers_2, parameters, components, void 0, [], comments);
+  return ArcWorkflow.make(identifier_4, title, description, workflowType_1, uri, version, subworkflowIdentifiers_2, parameters, components, void 0, [], void 0, comments);
 }
 function fromSparseTable(matrix) {
   const comments = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
@@ -73,7 +73,7 @@ function toSparseTable(workflow) {
   let wt;
   const tt = defaultArg(workflow.WorkflowType, new OntologyAnnotation());
   wt = OntologyAnnotation.toStringObject(tt, true);
-  const pAgg = ProtocolParameter_toAggregatedStrings(";", ofSeq(workflow.Parameters));
+  const pAgg = OntologyAnnotation_toAggregatedStrings(";", Array.from(workflow.Parameters));
   const cAgg = Component_toAggregatedStrings(";", ofSeq(workflow.Components));
   const subWorkflowsAgg = join(";", workflow.SubWorkflowIdentifiers);
   addToDict(matrix.Matrix, [identifierLabel, 1], patternInput[0]);

package/dist/ts/ts/WorkflowGraph/Adapters.d.ts

@@ -0,0 +1,36 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcRun, ArcWorkflow, ArcInvestigation } from '../Core/ArcTypes.js';
+import { FSharpMap } from '@fable-org/fable-library-js/Map.js';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
+import { WorkflowGraphIndex, WorkflowGraph, GraphBuildIssue } from './GraphTypes.js';
+import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
+/**
+ * Builds a lookup map of normalized CWL file paths to processing units from all workflows and runs in an investigation.
+ */
+export declare function createCwlLookupFromInvestigation(investigation: Option<ArcInvestigation>): FSharpMap<string, CWLProcessingUnit_$union>;
+/**
+ * Wraps a CWL lookup map into a resolver function suitable for WorkflowGraphBuildOptions.TryResolveRunPath.
+ */
+export declare function createResolver(lookup: FSharpMap<string, CWLProcessingUnit_$union>): Option<((arg0: string) => Option<CWLProcessingUnit_$union>)>;
+/**
+ * Creates a GraphBuildIssue for a workflow or run that has no CWL description.
+ */
+export declare function createMissingDescriptionError<$a>(identifier: string, scopeType: $a): GraphBuildIssue;
+/**
+ * Converts an ArcWorkflow into a WorkflowGraph.
+ * Returns Error with a GraphBuildIssue if the workflow has no CWL description.
+ * Automatically creates a resolver from the parent investigation's CWL descriptions.
+ */
+export declare function ofWorkflow(workflow: ArcWorkflow): FSharpResult$2_$union<WorkflowGraph, GraphBuildIssue>;
+/**
+ * Converts an ArcRun into a WorkflowGraph.
+ * Returns Error with a GraphBuildIssue if the run has no CWL description.
+ * Automatically creates a resolver from the parent investigation's CWL descriptions.
+ */
+export declare function ofRun(run: ArcRun): FSharpResult$2_$union<WorkflowGraph, GraphBuildIssue>;
+/**
+ * Builds workflow graphs for all workflows and runs in an ArcInvestigation.
+ * Returns a WorkflowGraphIndex containing named results for each workflow and run.
+ */
+export declare function ofInvestigation(investigation: ArcInvestigation): WorkflowGraphIndex;
+//# sourceMappingURL=Adapters.d.ts.map

package/dist/ts/ts/WorkflowGraph/Adapters.d.ts.map

@@ -0,0 +1 @@
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