@nfdi4plants/arctrl 3.0.0-beta.3 → 3.0.0-beta.4

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js

@@ -0,0 +1,105 @@
+import { ofArray, map, empty, ofSeq, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { value, unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
+import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
+import { ProtocolParameter_fromAggregatedStrings, Component_fromAggregatedStrings, ProtocolParameter_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
+import { ArcWorkflow_make, ArcWorkflow__get_Identifier, ArcWorkflow__get_WorkflowType, ArcWorkflow__get_Parameters, ArcWorkflow__get_Components, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_Title, ArcWorkflow__get_Description, ArcWorkflow__get_URI, ArcWorkflow__get_Version, ArcWorkflow__get_Comments } from '../../Core/ArcTypes.js';
+import { createMissingIdentifier, Workflow_tryIdentifierFromFileName, Workflow_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
+import { Comment_fromString, Comment_toString } from './Comment.js';
+import { SparseTable_FromRows_Z5579EC29, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { join } from '../../../node_modules/@fable-org/fable-library-js/String.js';
+import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
+import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
+import { stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+
+const identifierLabel = "Identifier";
+const titleLabel = "Title";
+const descriptionLabel = "Description";
+const workflowTypeLabel = "Type";
+const typeTermAccessionNumberLabel = "Type Term Accession Number";
+const typeTermSourceREFLabel = "Type Term Source REF";
+const subWorkflowIdentifiersLabel = "Sub Workflow Identifiers";
+const uriLabel = "URI";
+const versionLabel = "Version";
+const parametersNameLabel = "Parameters Name";
+const parametersTermAccessionNumberLabel = "Parameters Term Accession Number";
+const parametersTermSourceREFLabel = "Parameters Term Source REF";
+const componentsNameLabel = "Components Name";
+const componentsTypeLabel = "Components Type";
+const componentsTypeTermAccessionNumberLabel = "Components Type Term Accession Number";
+const componentsTypeTermSourceREFLabel = "Components Type Term Source REF";
+const fileNameLabel = "File Name";
+const labels = ofArray([identifierLabel, titleLabel, descriptionLabel, workflowTypeLabel, typeTermAccessionNumberLabel, typeTermSourceREFLabel, subWorkflowIdentifiersLabel, uriLabel, versionLabel, parametersNameLabel, parametersTermAccessionNumberLabel, parametersTermSourceREFLabel, componentsNameLabel, componentsTypeLabel, componentsTypeTermAccessionNumberLabel, componentsTypeTermSourceREFLabel, fileNameLabel]);
+function fromString(identifier, title, description, workflowType, workflowTypeTermAccessionNumber, workflowTypeTermSourceREF, subworkflowIdentifiers, uri, version, parametersName, parametersTermAccessionNumber, parametersTermSourceREF, componentsName, componentsType, componentsTypeTermAccessionNumber, componentsTypeTermSourceREF, fileName, comments) {
+  let matchValue;
+  let subworkflowIdentifiers_2;
+  if (subworkflowIdentifiers == null) {
+    subworkflowIdentifiers_2 = [];
+  } else {
+    const subworkflowIdentifiers_1 = value(subworkflowIdentifiers);
+    const collection = map$1((s) => s.trim(), subworkflowIdentifiers_1.split(";"));
+    subworkflowIdentifiers_2 = Array.from(collection);
+  }
+  let workflowType_1;
+  const v = OntologyAnnotation.create(unwrap(workflowType), unwrap(workflowTypeTermSourceREF), unwrap(workflowTypeTermAccessionNumber));
+  workflowType_1 = Option_fromValueWithDefault(new OntologyAnnotation(), v);
+  let parameters;
+  const collection_1 = ProtocolParameter_fromAggregatedStrings(";", parametersName, parametersTermSourceREF, parametersTermAccessionNumber);
+  parameters = Array.from(collection_1);
+  let components;
+  const collection_2 = Component_fromAggregatedStrings(";", componentsName, componentsType, componentsTypeTermSourceREF, componentsTypeTermAccessionNumber);
+  components = Array.from(collection_2);
+  return ArcWorkflow_make(identifier == null ? fileName == null ? createMissingIdentifier() : (matchValue = Workflow_tryIdentifierFromFileName(value(fileName)), matchValue != null ? value(matchValue) : createMissingIdentifier()) : value(identifier), title, description, workflowType_1, uri, version, subworkflowIdentifiers_2, parameters, components, void 0, [], comments);
+}
+function fromSparseTable(matrix) {
+  const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
+  return fromString(SparseTable__TryGetValue_11FD62A8(matrix, [identifierLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [titleLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [descriptionLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [workflowTypeLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermAccessionNumberLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermSourceREFLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [subWorkflowIdentifiersLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [uriLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [versionLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersNameLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermAccessionNumberLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermSourceREFLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsNameLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermAccessionNumberLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermSourceREFLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [fileNameLabel, 0]), Array.from(comments));
+}
+function toSparseTable(workflow) {
+  const matrix = SparseTable_Create_Z2192E64B(void 0, labels, void 0, 2);
+  let commentKeys = empty();
+  const patternInput = ArcWorkflow__get_Identifier(workflow).startsWith("MISSING_IDENTIFIER_") ? ["", ""] : [ArcWorkflow__get_Identifier(workflow), Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(workflow))];
+  let wt;
+  const tt = defaultArg(ArcWorkflow__get_WorkflowType(workflow), new OntologyAnnotation());
+  wt = OntologyAnnotation.toStringObject(tt, true);
+  const pAgg = ProtocolParameter_toAggregatedStrings(";", ofSeq(ArcWorkflow__get_Parameters(workflow)));
+  const cAgg = Component_toAggregatedStrings(";", ofSeq(ArcWorkflow__get_Components(workflow)));
+  const subWorkflowsAgg = join(";", ArcWorkflow__get_SubWorkflowIdentifiers(workflow));
+  addToDict(matrix.Matrix, [identifierLabel, 1], patternInput[0]);
+  addToDict(matrix.Matrix, [titleLabel, 1], defaultArg(ArcWorkflow__get_Title(workflow), ""));
+  addToDict(matrix.Matrix, [descriptionLabel, 1], defaultArg(ArcWorkflow__get_Description(workflow), ""));
+  addToDict(matrix.Matrix, [workflowTypeLabel, 1], wt.TermName);
+  addToDict(matrix.Matrix, [typeTermAccessionNumberLabel, 1], wt.TermAccessionNumber);
+  addToDict(matrix.Matrix, [typeTermSourceREFLabel, 1], wt.TermSourceREF);
+  addToDict(matrix.Matrix, [subWorkflowIdentifiersLabel, 1], subWorkflowsAgg);
+  addToDict(matrix.Matrix, [uriLabel, 1], defaultArg(ArcWorkflow__get_URI(workflow), ""));
+  addToDict(matrix.Matrix, [versionLabel, 1], defaultArg(ArcWorkflow__get_Version(workflow), ""));
+  addToDict(matrix.Matrix, [parametersNameLabel, 1], pAgg.TermNameAgg);
+  addToDict(matrix.Matrix, [parametersTermAccessionNumberLabel, 1], pAgg.TermAccessionNumberAgg);
+  addToDict(matrix.Matrix, [parametersTermSourceREFLabel, 1], pAgg.TermSourceREFAgg);
+  addToDict(matrix.Matrix, [componentsNameLabel, 1], cAgg.NameAgg);
+  addToDict(matrix.Matrix, [componentsTypeLabel, 1], cAgg.TermNameAgg);
+  addToDict(matrix.Matrix, [componentsTypeTermAccessionNumberLabel, 1], cAgg.TermAccessionNumberAgg);
+  addToDict(matrix.Matrix, [componentsTypeTermSourceREFLabel, 1], cAgg.TermSourceREFAgg);
+  addToDict(matrix.Matrix, [fileNameLabel, 1], patternInput[1]);
+  ResizeArray_iter((comment) => {
+    const patternInput_1 = Comment_toString(comment);
+    const n = patternInput_1[0];
+    commentKeys = cons(n, commentKeys);
+    addToDict(matrix.Matrix, [n, 1], patternInput_1[1]);
+  }, ArcWorkflow__get_Comments(workflow));
+  return new SparseTable(matrix.Matrix, matrix.Keys, reverse(List_distinct(commentKeys, {
+    Equals: (x, y) => x === y,
+    GetHashCode: stringHash
+  })), matrix.ColumnCount);
+}
+function fromRows(lineNumber, rows) {
+  const tupledArg = SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, "Workflow");
+  return [tupledArg[0], tupledArg[1], tupledArg[2], fromSparseTable(tupledArg[3])];
+}
+function toRows(workflow) {
+  return SparseTable_ToRows_759CAFC1(toSparseTable(workflow), "Workflow");
+}
+
+export { componentsNameLabel, componentsTypeLabel, componentsTypeTermAccessionNumberLabel, componentsTypeTermSourceREFLabel, descriptionLabel, fileNameLabel, fromRows, fromSparseTable, fromString, identifierLabel, labels, parametersNameLabel, parametersTermAccessionNumberLabel, parametersTermSourceREFLabel, subWorkflowIdentifiersLabel, titleLabel, toRows, toSparseTable, typeTermAccessionNumberLabel, typeTermSourceREFLabel, uriLabel, versionLabel, workflowTypeLabel };

package/dist/ts/ts/Template.Web.js

@@ -0,0 +1,22 @@
+import { defaultArg } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { singleton } from '../node_modules/@fable-org/fable-library-js/AsyncBuilder.js';
+import { downloadFile } from './WebRequest/WebRequest.js';
+import { Templates_fromJsonString } from './JsonIO/Table/Templates.js';
+import { startAsPromise } from '../node_modules/@fable-org/fable-library-js/Async.js';
+
+function getTemplates(url) {
+  const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates_v2.0.0.json");
+  return singleton.Delay(() => singleton.Bind(downloadFile(url_1), (_arg) => {
+    const mapResult = Templates_fromJsonString(_arg);
+    return singleton.Return(mapResult);
+  }));
+}
+class WebController {
+  constructor() {
+  }
+  static getTemplates(url) {
+    return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
+  }
+}
+
+export { WebController, getTemplates };

package/dist/ts/ts/ValidationPackages/ValidationPackage.js

@@ -0,0 +1,53 @@
+import { unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { join } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { toList, delay, append, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { equals, stringHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { boxHashArray, boxHashOption } from '../Core/Helper/HashCodes.js';
+
+class ValidationPackage {
+  constructor(name, version) {
+    this.version = version;
+    this._name = name;
+    this._version = this.version;
+  }
+  get Name() {
+    const this$ = this;
+    return this$._name;
+  }
+  set Name(name) {
+    const this$ = this;
+    this$._name = name;
+  }
+  get Version() {
+    const this$ = this;
+    return unwrap(this$._version);
+  }
+  set Version(version) {
+    const this$ = this;
+    this$._version = version;
+  }
+  static make(name, version) {
+    return new ValidationPackage(name, unwrap(version));
+  }
+  Copy() {
+    const this$ = this;
+    const name = this$.Name;
+    const version = this$.Version;
+    return ValidationPackage.make(name, version);
+  }
+  toString() {
+    const this$ = this;
+    return join("\n", toList(delay(() => append(singleton("{"), delay(() => append(singleton(` Name = ${this$.Name}`), delay(() => append(this$.version != null ? singleton(` Version = ${value(this$.Version)}`) : empty(), delay(() => singleton("}"))))))))));
+  }
+  Equals(obj) {
+    let other_vp;
+    const this$ = this;
+    return obj instanceof ValidationPackage && (other_vp = obj, other_vp.Name === this$.Name && equals(other_vp.Version, this$.Version));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return boxHashArray([stringHash(this$.Name), boxHashOption(this$.Version)]) | 0;
+  }
+}
+
+export { ValidationPackage };

package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js

@@ -0,0 +1,78 @@
+import { unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { join } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { toList, delay, append, fold, length, map, item, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { sortBy } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { equals, compareArrays } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { rangeDouble } from '../../node_modules/@fable-org/fable-library-js/Range.js';
+import { boxHashArray, boxHashOption, boxHashSeq } from '../Core/Helper/HashCodes.js';
+
+class ValidationPackagesConfig {
+  constructor(validation_packages, arc_specification) {
+    this._arc_specification = arc_specification;
+    this._validation_packages = validation_packages;
+  }
+  get ValidationPackages() {
+    const this$ = this;
+    return this$._validation_packages;
+  }
+  set ValidationPackages(validation_packages) {
+    const this$ = this;
+    this$._validation_packages = validation_packages;
+  }
+  get ARCSpecification() {
+    const this$ = this;
+    return unwrap(this$._arc_specification);
+  }
+  set ARCSpecification(arc_specification) {
+    const this$ = this;
+    this$._arc_specification = arc_specification;
+  }
+  static make(validation_packages, arc_specification) {
+    return new ValidationPackagesConfig(validation_packages, unwrap(arc_specification));
+  }
+  Copy() {
+    const this$ = this;
+    const validation_packages = this$.ValidationPackages;
+    const arc_specification = this$.ARCSpecification;
+    return ValidationPackagesConfig.make(validation_packages, arc_specification);
+  }
+  toString() {
+    const this$ = this;
+    return join("\n", toList(delay(() => append(singleton("{"), delay(() => append(this$.ARCSpecification != null ? singleton(` ARCSpecification = ${value(this$.ARCSpecification)}`) : empty(), delay(() => append(singleton(" ValidationPackages = ["), delay(() => append(singleton(join(`;${"\n"}`, map(toString, this$.ValidationPackages))), delay(() => append(singleton("]"), delay(() => singleton("}"))))))))))))));
+  }
+  StructurallyEquals(other) {
+    const this$ = this;
+    const sort = (arg) => sortBy((vp) => [vp.Name, vp.Version], Array.from(arg), {
+      Compare: compareArrays
+    });
+    if (equals(this$.ARCSpecification, other.ARCSpecification)) {
+      const a = sort(this$.ValidationPackages);
+      const b = sort(other.ValidationPackages);
+      return length(a) === length(b) && fold((acc, e) => {
+        if (acc) {
+          return e;
+        } else {
+          return false;
+        }
+      }, true, toList(delay(() => map((i) => equals(item(i, a), item(i, b)), rangeDouble(0, 1, length(a) - 1)))));
+    } else {
+      return false;
+    }
+  }
+  ReferenceEquals(other) {
+    const this$ = this;
+    return this$ === other;
+  }
+  Equals(other) {
+    let other_vp;
+    const this$ = this;
+    return other instanceof ValidationPackagesConfig && (other_vp = other, this$.StructurallyEquals(other_vp));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return boxHashArray([boxHashOption(this$.ARCSpecification), boxHashSeq(this$.ValidationPackages)]) | 0;
+  }
+}
+
+export { ValidationPackagesConfig };

package/dist/ts/ts/WebRequest/WebRequest.Node.js

@@ -0,0 +1,13 @@
+import { awaitPromise } from '../../node_modules/@fable-org/fable-library-js/Async.js';
+import { fetch$ } from '../fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js';
+import { empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
+
+function isNode() {
+  return typeof process !== "undefined" && process.versions != null && process.versions.node != null;
+}
+function downloadFile(url) {
+  let pr_1, pr;
+  return awaitPromise((pr_1 = (pr = fetch$(url, empty()), pr.then((res) => res.text())), pr_1.then((txt) => txt)));
+}
+
+export { downloadFile, isNode };

package/dist/ts/ts/WebRequest/WebRequest.js

@@ -0,0 +1,19 @@
+import { isNode, downloadFile as downloadFile$1 } from './WebRequest.Node.js';
+import { singleton } from '../../node_modules/@fable-org/fable-library-js/AsyncBuilder.js';
+import { Http_get } from '../fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js';
+import { toFail, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import 'isomorphic-fetch';
+
+function downloadFile(url) {
+  if (isNode()) {
+    return downloadFile$1(url);
+  } else {
+    return singleton.Delay(() => singleton.Bind(Http_get(url), (_arg) => {
+      const statusCode = _arg[0] | 0;
+      const responseText = _arg[1];
+      return singleton.Return(statusCode === 200 ? responseText : toFail(printf("Status %d => %s"))(statusCode)(responseText));
+    }));
+  }
+}
+
+export { downloadFile };

package/dist/ts/ts/Xlsx.d.ts

@@ -1,4 +1,4 @@
-import { FsWorkbook } from './fable_modules/FsSpreadsheet.6.3.1/FsWorkbook.fs.js';
+import { FsWorkbook } from './fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { DataMap } from './Core/DataMap.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
 import { ArcInvestigation, ArcStudy, ArcAssay } from './Core/ArcTypes.js';

package/dist/ts/ts/Xlsx.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Xlsx.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Xlsx.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,8DAA8D,CAAC;AAC1F,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAG5C,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE1E,OAAO,EAAS,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAIxE,qBAAa,sBAAsB;;IAG/B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO;IAGzC,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU;IAG1C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAGjD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;CAGjE;AAED,wBAAgB,kCAAkC,IAAI,QAAQ,CAE7D;AAED,wBAAgB,4BAA4B,IAAI,sBAAsB,CAErE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,QAAQ;IAG1C,YAAY,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU;IAGzC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC;IAGlD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhE;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAGlE,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,UAAU;IAG9D,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC;IAG1E,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;CAGrF;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,4BAA4B;;IAGrC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,gBAAgB;IAGlD,YAAY,CAAC,aAAa,EAAE,gBAAgB,GAAG,UAAU;IAGzD,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAG1D,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhF;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,kCAAkC,IAAI,4BAA4B,CAEjF;AAED,qBAAa,cAAc;;IAGvB,MAAM,KAAK,OAAO,IAAI,sBAAsB,CAE3C;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,aAAa,IAAI,4BAA4B,CAEvD;CACJ;AAED,wBAAgB,0BAA0B,IAAI,QAAQ,CAErD"}

package/dist/ts/ts/Xlsx.js

@@ -0,0 +1,91 @@
+import { fromFsWorkbook, toFsWorkbook } from './Spreadsheet/DataMap.js';
+import { map } from './CrossAsync.js';
+import { FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5, FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static } from './fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js';
+import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from './Spreadsheet/ArcAssay.js';
+import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from './Spreadsheet/ArcStudy.js';
+import { ofSeq } from '../node_modules/@fable-org/fable-library-js/List.js';
+import { unwrap, map as map$1 } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from './Spreadsheet/ArcInvestigation.js';
+
+class XlsxHelper_DatamapXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return fromFsWorkbook(fswb);
+  }
+  toFsWorkbook(datamap) {
+    return toFsWorkbook(datamap);
+  }
+  fromXlsxFileAsync(path) {
+    return map(fromFsWorkbook, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, datamap) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, toFsWorkbook(datamap));
+  }
+}
+class XlsxHelper_AssayXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(fswb);
+  }
+  toFsWorkbook(assay) {
+    return ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay);
+  }
+  fromXlsxFileAsync(path) {
+    return map(ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, assay) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay));
+  }
+}
+class XlsxHelper_StudyXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fswb);
+  }
+  toFsWorkbook(study, assays) {
+    return ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, unwrap(map$1(ofSeq, assays)));
+  }
+  fromXlsxFileAsync(path) {
+    return map(ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, study, assays) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, unwrap(map$1(ofSeq, assays))));
+  }
+}
+class XlsxHelper_InvestigationXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D(fswb);
+  }
+  toFsWorkbook(investigation) {
+    return ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(investigation);
+  }
+  fromXlsxFileAsync(path) {
+    return map(ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, investigation) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(investigation));
+  }
+}
+class XlsxController {
+  constructor() {
+  }
+  static get Datamap() {
+    return new XlsxHelper_DatamapXlsx();
+  }
+  static get Assay() {
+    return new XlsxHelper_AssayXlsx();
+  }
+  static get Study() {
+    return new XlsxHelper_StudyXlsx();
+  }
+  static get Investigation() {
+    return new XlsxHelper_InvestigationXlsx();
+  }
+}
+
+export { XlsxController, XlsxHelper_AssayXlsx, XlsxHelper_DatamapXlsx, XlsxHelper_InvestigationXlsx, XlsxHelper_StudyXlsx };

package/dist/ts/ts/Yaml/Encode.js

@@ -0,0 +1,8 @@
+import { defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+
+const DefaultWhitespace = 2;
+function defaultWhitespace(spaces) {
+  return defaultArg(spaces, DefaultWhitespace);
+}
+
+export { DefaultWhitespace, defaultWhitespace };

package/dist/ts/ts/Yaml/ValidationPackage.js

@@ -0,0 +1,26 @@
+import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { YAMLElement_Nil, YAMLElement_Object, YAMLElement_Mapping, YAMLContent_create_27AED5E3 } from '../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js';
+import { equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { string, tryInclude } from '../fable_modules/YAMLicious.0.0.3/Encode.fs.js';
+import { toList, delay, collect, singleton } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { ValidationPackage } from '../ValidationPackages/ValidationPackage.js';
+import { object, string as string$1 } from '../fable_modules/YAMLicious.0.0.3/Decode.fs.js';
+
+function ValidationPackage_encoder(validationpackage) {
+  const objSeq = choose((tupledArg) => {
+    const v = tupledArg[1];
+    if (equals(v, YAMLElement_Nil())) {
+      return void 0;
+    } else {
+      return [tupledArg[0], v];
+    }
+  }, ofArray([["name", string(validationpackage.Name)], tryInclude("version", string, validationpackage.Version)]));
+  return YAMLElement_Object(toList(delay(() => collect((matchValue) => singleton(YAMLElement_Mapping(YAMLContent_create_27AED5E3(matchValue[0]), matchValue[1])), objSeq))));
+}
+const ValidationPackage_decoder = (value_2) => object((get$) => {
+  let objectArg, objectArg_1;
+  return new ValidationPackage((objectArg = get$.Required, objectArg.Field("name", string$1)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("version", string$1))));
+}, value_2);
+
+export { ValidationPackage_decoder, ValidationPackage_encoder };

package/dist/ts/ts/Yaml/ValidationPackagesConfig.js

@@ -0,0 +1,40 @@
+import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { YAMLElement_Nil, YAMLElement_Object, Config, YAMLElement_Mapping, YAMLContent_create_27AED5E3 } from '../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js';
+import { equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { tryInclude, resizearray, string } from '../fable_modules/YAMLicious.0.0.3/Encode.fs.js';
+import { ValidationPackage_encoder, ValidationPackage_decoder } from './ValidationPackage.js';
+import { toList, delay, collect, singleton } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { ValidationPackagesConfig } from '../ValidationPackages/ValidationPackagesConfig.js';
+import { object, resizearray as resizearray$1, string as string$1 } from '../fable_modules/YAMLicious.0.0.3/Decode.fs.js';
+import { read } from '../fable_modules/YAMLicious.0.0.3/Reader.fs.js';
+import { defaultWhitespace } from './Encode.js';
+import { write } from '../fable_modules/YAMLicious.0.0.3/Writer.fs.js';
+
+function ValidationPackagesConfig_encoder(validationpackage) {
+  const objSeq = choose((tupledArg) => {
+    const v = tupledArg[1];
+    if (equals(v, YAMLElement_Nil())) {
+      return void 0;
+    } else {
+      return [tupledArg[0], v];
+    }
+  }, ofArray([tryInclude("arc_specification", string, validationpackage.ARCSpecification), ["validation_packages", resizearray(ValidationPackage_encoder, validationpackage.ValidationPackages)]]));
+  return YAMLElement_Object(toList(delay(() => collect((matchValue) => singleton(YAMLElement_Mapping(YAMLContent_create_27AED5E3(matchValue[0]), matchValue[1])), objSeq))));
+}
+const ValidationPackagesConfig_decoder = (value_2) => object((get$) => {
+  let objectArg, objectArg_1;
+  return new ValidationPackagesConfig((objectArg = get$.Required, objectArg.Field("validation_packages", (value) => resizearray$1(ValidationPackage_decoder, value))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("arc_specification", string$1))));
+}, value_2);
+function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5(s) {
+  return ValidationPackagesConfig_decoder(read(s));
+}
+function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toYamlString_Static_71136F3F(whitespace) {
+  return (vp) => {
+    const element = ValidationPackagesConfig_encoder(vp);
+    const whitespace_1 = defaultWhitespace(whitespace) | 0;
+    return write(element, (c) => new Config(whitespace_1, c.Level));
+  };
+}
+
+export { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toYamlString_Static_71136F3F, ValidationPackagesConfig_decoder, ValidationPackagesConfig_encoder };