@nfdi4plants/arctrl 3.0.0-beta.3 → 3.0.0-beta.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -0
- package/dist/ts/index.js +63 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +354 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +28 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/AsyncBuilder.js +186 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +8 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Boolean.js +24 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +31 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +574 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +59 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +30 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +48 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +120 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +680 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +655 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +105 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +320 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +204 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Native.js +10 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Numeric.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +23 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +111 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +114 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +36 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +846 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +1160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +364 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +193 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Unicode.13.0.0.js +6 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Uri.js +160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +367 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +825 -0
- package/dist/ts/ts/ARC.js +914 -0
- package/dist/ts/ts/Contract/ARC.js +52 -0
- package/dist/ts/ts/Contract/ArcAssay.js +80 -0
- package/dist/ts/ts/Contract/ArcInvestigation.js +57 -0
- package/dist/ts/ts/Contract/ArcRun.js +76 -0
- package/dist/ts/ts/Contract/ArcStudy.js +76 -0
- package/dist/ts/ts/Contract/ArcWorkflow.js +77 -0
- package/dist/ts/ts/Contract/Contract.js +45 -0
- package/dist/ts/ts/Contract/Datamap.js +221 -0
- package/dist/ts/ts/Contract/Git.js +57 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +57 -0
- package/dist/ts/ts/ContractIO/ContractIO.js +202 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +273 -0
- package/dist/ts/ts/Conversion.js +1247 -0
- package/dist/ts/ts/Core/ArcTypes.js +3393 -0
- package/dist/ts/ts/Core/Comment.js +91 -0
- package/dist/ts/ts/Core/CommentList.js +27 -0
- package/dist/ts/ts/Core/Conversion.js +923 -0
- package/dist/ts/ts/Core/Data.js +179 -0
- package/dist/ts/ts/Core/DataContext.js +108 -0
- package/dist/ts/ts/Core/DataFile.js +50 -0
- package/dist/ts/ts/Core/DataMap.js +53 -0
- package/dist/ts/ts/Core/Helper/Collections.js +323 -0
- package/dist/ts/ts/Core/Helper/HashCodes.js +35 -0
- package/dist/ts/ts/Core/Helper/Identifier.js +96 -0
- package/dist/ts/ts/Core/Helper/ORCID.js +34 -0
- package/dist/ts/ts/Core/Helper/Regex.js +296 -0
- package/dist/ts/ts/Core/Helper/SemVer.js +31 -0
- package/dist/ts/ts/Core/Helper/Url.js +32 -0
- package/dist/ts/ts/Core/IdentifierSetters.js +9 -0
- package/dist/ts/ts/Core/OntologyAnnotation.js +207 -0
- package/dist/ts/ts/Core/OntologySourceReference.js +84 -0
- package/dist/ts/ts/Core/Person.js +183 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.js +73 -0
- package/dist/ts/ts/Core/Process/Component.js +121 -0
- package/dist/ts/ts/Core/Process/Factor.js +104 -0
- package/dist/ts/ts/Core/Process/FactorValue.js +68 -0
- package/dist/ts/ts/Core/Process/Material.js +49 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +30 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +68 -0
- package/dist/ts/ts/Core/Process/MaterialType.js +28 -0
- package/dist/ts/ts/Core/Process/Process.js +136 -0
- package/dist/ts/ts/Core/Process/ProcessInput.js +207 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.js +178 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +135 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.js +56 -0
- package/dist/ts/ts/Core/Process/Protocol.js +54 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +69 -0
- package/dist/ts/ts/Core/Process/Sample.js +44 -0
- package/dist/ts/ts/Core/Process/Source.js +38 -0
- package/dist/ts/ts/Core/Publication.js +108 -0
- package/dist/ts/ts/Core/Table/ArcTable.js +889 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.js +993 -0
- package/dist/ts/ts/Core/Table/ArcTables.js +415 -0
- package/dist/ts/ts/Core/Table/CompositeCell.js +334 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.js +52 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.js +792 -0
- package/dist/ts/ts/Core/Template.js +180 -0
- package/dist/ts/ts/Core/Templates.js +75 -0
- package/dist/ts/ts/Core/URI.js +8 -0
- package/dist/ts/ts/Core/Value.js +194 -0
- package/dist/ts/ts/CrossAsync.js +20 -0
- package/dist/ts/ts/FileSystem/DefaultGitattributes.js +3 -0
- package/dist/ts/ts/FileSystem/DefaultGitignore.js +3 -0
- package/dist/ts/ts/FileSystem/FileSystem.js +48 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.js +339 -0
- package/dist/ts/ts/FileSystem/Path.js +36 -0
- package/dist/ts/ts/Json/Assay.d.ts +1 -1
- package/dist/ts/ts/Json/Assay.js +221 -0
- package/dist/ts/ts/Json/Comment.d.ts +1 -1
- package/dist/ts/ts/Json/Comment.js +112 -0
- package/dist/ts/ts/Json/Data.d.ts +1 -1
- package/dist/ts/ts/Json/Data.js +138 -0
- package/dist/ts/ts/Json/DataFile.d.ts +1 -1
- package/dist/ts/ts/Json/DataFile.js +55 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts +1 -1
- package/dist/ts/ts/Json/DataMap/DataContext.js +39 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts +1 -1
- package/dist/ts/ts/Json/DataMap/DataMap.js +27 -0
- package/dist/ts/ts/Json/Decode.d.ts +2 -2
- package/dist/ts/ts/Json/Decode.js +209 -0
- package/dist/ts/ts/Json/Encode.d.ts +1 -1
- package/dist/ts/ts/Json/Encode.js +65 -0
- package/dist/ts/ts/Json/IDTable.d.ts +1 -1
- package/dist/ts/ts/Json/IDTable.js +28 -0
- package/dist/ts/ts/Json/Investigation.d.ts +1 -1
- package/dist/ts/ts/Json/Investigation.js +229 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts +1 -1
- package/dist/ts/ts/Json/OntologyAnnotation.js +194 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts +1 -1
- package/dist/ts/ts/Json/OntologySourceReference.js +119 -0
- package/dist/ts/ts/Json/Person.d.ts +1 -1
- package/dist/ts/ts/Json/Person.js +316 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +1 -1
- package/dist/ts/ts/Json/Process/AssayMaterials.js +21 -0
- package/dist/ts/ts/Json/Process/Component.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Component.js +41 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Factor.js +53 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/FactorValue.js +44 -0
- package/dist/ts/ts/Json/Process/Material.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Material.js +112 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttribute.js +43 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +44 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialType.js +45 -0
- package/dist/ts/ts/Json/Process/Process.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Process.js +103 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessInput.js +42 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessOutput.js +35 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessParameterValue.js +28 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Protocol.js +166 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProtocolParameter.js +43 -0
- package/dist/ts/ts/Json/Process/Sample.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Sample.js +165 -0
- package/dist/ts/ts/Json/Process/Source.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Source.js +133 -0
- package/dist/ts/ts/Json/Process/StudyMaterials.d.ts +1 -1
- package/dist/ts/ts/Json/Process/StudyMaterials.js +23 -0
- package/dist/ts/ts/Json/Process/Value.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Value.js +41 -0
- package/dist/ts/ts/Json/PropertyValue.d.ts +1 -1
- package/dist/ts/ts/Json/PropertyValue.js +280 -0
- package/dist/ts/ts/Json/Publication.d.ts +1 -1
- package/dist/ts/ts/Json/Publication.js +123 -0
- package/dist/ts/ts/Json/ROCrate/LDContext.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDContext.js +115 -0
- package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDGraph.js +83 -0
- package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDNode.js +190 -0
- package/dist/ts/ts/Json/ROCrate/LDRef.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDRef.js +24 -0
- package/dist/ts/ts/Json/ROCrate/LDValue.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDValue.js +63 -0
- package/dist/ts/ts/Json/StringTable.d.ts +1 -1
- package/dist/ts/ts/Json/StringTable.js +66 -0
- package/dist/ts/ts/Json/Study.d.ts +1 -1
- package/dist/ts/ts/Json/Study.js +326 -0
- package/dist/ts/ts/Json/Table/ArcTable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/ArcTable.js +210 -0
- package/dist/ts/ts/Json/Table/CellTable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CellTable.js +53 -0
- package/dist/ts/ts/Json/Table/CompositeCell.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CompositeCell.js +106 -0
- package/dist/ts/ts/Json/Table/CompositeHeader.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CompositeHeader.js +121 -0
- package/dist/ts/ts/Json/Table/IOType.d.ts +1 -1
- package/dist/ts/ts/Json/Table/IOType.js +15 -0
- package/dist/ts/ts/Json/Table/OATable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/OATable.js +50 -0
- package/dist/ts/ts/Json/Table/Templates.d.ts +1 -1
- package/dist/ts/ts/Json/Table/Templates.js +15 -0
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +29 -0
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +41 -0
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +69 -0
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +37 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +37 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +41 -0
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +25 -0
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +86 -0
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +57 -0
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +45 -0
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +33 -0
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +33 -0
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +77 -0
- package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/property_value_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts +1 -1
- package/dist/ts/ts/Json.js +171 -0
- package/dist/ts/ts/JsonIO/Assay.js +77 -0
- package/dist/ts/ts/JsonIO/Investigation.js +77 -0
- package/dist/ts/ts/JsonIO/LDObject.js +77 -0
- package/dist/ts/ts/JsonIO/OntologyAnnotation.js +56 -0
- package/dist/ts/ts/JsonIO/Study.js +77 -0
- package/dist/ts/ts/JsonIO/Table/Compression.d.ts +1 -1
- package/dist/ts/ts/JsonIO/Table/Compression.js +39 -0
- package/dist/ts/ts/JsonIO/Table/Templates.d.ts +1 -1
- package/dist/ts/ts/JsonIO/Table/Templates.js +25 -0
- package/dist/ts/ts/ROCrate/Generic/Comment.js +103 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.js +624 -0
- package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +103 -0
- package/dist/ts/ts/ROCrate/Generic/File.js +184 -0
- package/dist/ts/ts/ROCrate/Generic/LabProcess.js +222 -0
- package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +257 -0
- package/dist/ts/ts/ROCrate/Generic/Organization.js +63 -0
- package/dist/ts/ts/ROCrate/Generic/Person.js +377 -0
- package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +143 -0
- package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +512 -0
- package/dist/ts/ts/ROCrate/Generic/Sample.js +131 -0
- package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +173 -0
- package/dist/ts/ts/ROCrate/Helper.js +7 -0
- package/dist/ts/ts/ROCrate/LDContext.js +288 -0
- package/dist/ts/ts/ROCrate/LDObject.js +855 -0
- package/dist/ts/ts/ROCrate/ROCrateContext.js +39 -0
- package/dist/ts/ts/ROCrateIO.d.ts +1 -1
- package/dist/ts/ts/ROCrateIO.js +58 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +149 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +63 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +108 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +410 -0
- package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcAssay.js +169 -0
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +316 -0
- package/dist/ts/ts/Spreadsheet/ArcRun.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcRun.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcRun.js +136 -0
- package/dist/ts/ts/Spreadsheet/ArcStudy.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcStudy.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcStudy.js +92 -0
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +125 -0
- package/dist/ts/ts/Spreadsheet/CollectionAux.js +34 -0
- package/dist/ts/ts/Spreadsheet/DataMap.d.ts +1 -1
- package/dist/ts/ts/Spreadsheet/DataMap.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMap.js +33 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +41 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.d.ts +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +418 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.d.ts +3 -3
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +85 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +90 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +58 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +85 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +133 -0
- package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +15 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +74 -0
- package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +58 -0
- package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +62 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +94 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +81 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Run.js +91 -0
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.d.ts +3 -3
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +193 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Study.js +238 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +105 -0
- package/dist/ts/ts/Template.Web.js +22 -0
- package/dist/ts/ts/ValidationPackages/ValidationPackage.js +53 -0
- package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +78 -0
- package/dist/ts/ts/WebRequest/WebRequest.Node.js +13 -0
- package/dist/ts/ts/WebRequest/WebRequest.js +19 -0
- package/dist/ts/ts/Xlsx.d.ts +1 -1
- package/dist/ts/ts/Xlsx.d.ts.map +1 -1
- package/dist/ts/ts/Xlsx.js +91 -0
- package/dist/ts/ts/Yaml/Encode.js +8 -0
- package/dist/ts/ts/Yaml/ValidationPackage.js +26 -0
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +40 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +344 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +103 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +19 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +17 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +7 -0
- package/dist/ts/ts/fable_modules/Fable.Exceljs.1.6.0/ExcelJs.fs.js +5 -0
- package/dist/ts/ts/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +18 -0
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/Promise.fs.js +44 -0
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js +5 -0
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +142 -0
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +76 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +359 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js +344 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js +154 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsColumn.fs.js +116 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsRow.fs.js +126 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +135 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js +422 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +5 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +25 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRange.fs.js +28 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js +82 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeBase.fs.js +69 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeColumn.fs.js +42 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeRow.fs.js +29 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +348 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +86 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +68 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +12 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +54 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +33 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +63 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +66 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +544 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +31 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +38 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +79 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js +57 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +235 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +16 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +45 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +89 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +480 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.js +11 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +212 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +164 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +136 -0
- package/package.json +10 -7
- package/dist/ts/__vite-browser-external-2447137e.js +0 -4
- package/dist/ts/__vite-browser-external-b3701507.cjs +0 -1
- package/dist/ts/arctrl.cjs.js +0 -5691
- package/dist/ts/arctrl.es.js +0 -35562
- package/dist/ts/arctrl.umd.js +0 -5691
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import { value, unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { OntologyAnnotation } from '../Core/OntologyAnnotation.js';
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import { Value } from '../Core/Value.js';
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import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
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import { tryInclude } from './Encode.js';
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import { context_jsonvalue } from './context/rocrate/property_value_context.js';
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import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { object, string } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
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import { AnnotationValue_decoder } from './OntologyAnnotation.js';
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function genID(p) {
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const matchValue = p.GetCategory();
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const matchValue_1 = p.GetValue();
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const matchValue_2 = p.GetUnit();
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let matchResult, t, u, v, t_1, v_1;
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if (matchValue != null) {
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if (matchValue_1 != null) {
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if (matchValue_2 == null) {
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matchResult = 1;
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t_1 = value(matchValue);
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v_1 = value(matchValue_1);
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} else {
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matchResult = 0;
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t = value(matchValue);
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u = value(matchValue_2);
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v = value(matchValue_1);
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}
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} else {
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matchResult = 2;
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}
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} else {
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matchResult = 2;
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}
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switch (matchResult) {
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case 0:
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return `#${p.GetAdditionalType()}/${t.NameText}=${v.Text}${u.NameText}`;
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case 1:
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return `#${p.GetAdditionalType()}/${t_1.NameText}=${v_1.Text}`;
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default:
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return `#Empty${p.GetAdditionalType()}`;
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}
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}
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function encoder(pv) {
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let value_8, value_10;
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let patternInput;
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const matchValue = pv.GetCategory();
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if (matchValue == null) {
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patternInput = [void 0, void 0];
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} else {
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const oa = value(matchValue);
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patternInput = [oa.Name, oa.TermAccessionNumber];
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}
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let patternInput_1;
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const matchValue_1 = pv.GetValue();
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if (matchValue_1 == null) {
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patternInput_1 = [void 0, void 0];
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} else {
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const v = value(matchValue_1);
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switch (v.tag) {
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case /* Int */
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1: {
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const t_1 = v.fields[0] | 0;
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patternInput_1 = [{
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Encode(helpers_1) {
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return helpers_1.encodeSignedIntegralNumber(t_1);
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}
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}, void 0];
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break;
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}
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case /* Float */
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2: {
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const t_2 = v.fields[0];
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patternInput_1 = [{
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Encode(helpers_2) {
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return helpers_2.encodeDecimalNumber(t_2);
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}
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}, void 0];
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break;
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}
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case /* Ontology */
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0: {
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const oa_1 = v.fields[0];
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patternInput_1 = [map((value_3) => ({
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Encode(helpers_3) {
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return helpers_3.encodeString(value_3);
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}
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}), oa_1.Name), map((value_5) => ({
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Encode(helpers_4) {
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return helpers_4.encodeString(value_5);
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}
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}), oa_1.TermAccessionNumber)];
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break;
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}
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default: {
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const t = v.fields[0];
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patternInput_1 = [{
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Encode(helpers) {
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return helpers.encodeString(t);
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}
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}, void 0];
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}
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}
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}
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let patternInput_2;
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const matchValue_2 = pv.GetUnit();
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if (matchValue_2 == null) {
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patternInput_2 = [void 0, void 0];
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} else {
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const oa_2 = value(matchValue_2);
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patternInput_2 = [oa_2.Name, oa_2.TermAccessionNumber];
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}
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const values_1 = choose((tupledArg) => map((v_1_1) => [tupledArg[0], v_1_1], tupledArg[1]), ofArray([["@id", (value_8 = genID(pv), {
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Encode(helpers_5) {
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return helpers_5.encodeString(value_8);
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}
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})], ["@type", {
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Encode(helpers_6) {
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return helpers_6.encodeString("PropertyValue");
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}
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}], ["additionalType", (value_10 = pv.GetAdditionalType(), {
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Encode(helpers_7) {
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return helpers_7.encodeString(value_10);
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}
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})], tryInclude("alternateName", (value_11) => ({
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Encode(helpers_8) {
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return helpers_8.encodeString(value_11);
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}
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}), pv.AlternateName()), tryInclude("measurementMethod", (value_13) => ({
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Encode(helpers_9) {
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return helpers_9.encodeString(value_13);
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}
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}), pv.MeasurementMethod()), tryInclude("description", (value_15) => ({
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Encode(helpers_10) {
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return helpers_10.encodeString(value_15);
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}
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}), pv.Description()), tryInclude("category", (value_17) => ({
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Encode(helpers_11) {
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return helpers_11.encodeString(value_17);
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}
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}), patternInput[0]), tryInclude("categoryCode", (value_19) => ({
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Encode(helpers_12) {
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return helpers_12.encodeString(value_19);
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}
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}), patternInput[1]), tryInclude("value", (x) => x, patternInput_1[0]), tryInclude("valueCode", (x_1) => x_1, patternInput_1[1]), tryInclude("unit", (value_21) => ({
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Encode(helpers_13) {
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return helpers_13.encodeString(value_21);
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}
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}), patternInput_2[0]), tryInclude("unitCode", (value_23) => ({
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Encode(helpers_14) {
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return helpers_14.encodeString(value_23);
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}
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152
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}), patternInput_2[1]), ["@context", context_jsonvalue]]));
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return {
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Encode(helpers_15) {
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const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_15)], values_1);
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return helpers_15.encodeObject(arg);
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}
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158
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};
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159
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}
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160
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function decoder(create) {
|
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161
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return object((get$) => {
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162
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let value$1, objectArg_7, code_4, objectArg_8;
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163
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let alternateName;
|
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164
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const objectArg = get$.Optional;
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alternateName = objectArg.Field("alternateName", string);
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166
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let measurementMethod;
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167
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const objectArg_1 = get$.Optional;
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measurementMethod = objectArg_1.Field("measurementMethod", string);
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let description;
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const objectArg_2 = get$.Optional;
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description = objectArg_2.Field("description", string);
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172
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let category;
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173
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let name;
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174
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const objectArg_3 = get$.Optional;
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name = objectArg_3.Field("category", string);
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let code;
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177
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const objectArg_4 = get$.Optional;
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code = objectArg_4.Field("categoryCode", string);
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let matchResult, code_1;
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if (name == null) {
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if (code != null) {
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if (value(code) === "") {
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matchResult = 0;
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} else {
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matchResult = 2;
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code_1 = value(code);
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}
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} else {
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matchResult = 0;
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}
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191
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} else if (code != null) {
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192
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if (value(code) === "") {
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matchResult = 1;
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} else {
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matchResult = 2;
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196
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code_1 = value(code);
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0: {
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category = void 0;
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break;
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205
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}
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206
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case 1: {
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try {
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208
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category = OntologyAnnotation.create(unwrap(name));
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209
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} catch (err) {
|
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210
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throw new Error(`Error while decoding category (name:${name}): ${err}`);
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211
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}
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212
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break;
|
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213
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+
}
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214
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default:
|
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215
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try {
|
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216
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category = OntologyAnnotation.fromTermAnnotation(code_1, unwrap(name));
|
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217
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+
} catch (err_1) {
|
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218
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throw new Error(`Error while decoding category (name:${name}, code:${code_1}): ${err_1}`);
|
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219
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+
}
|
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220
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+
}
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221
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+
let unit;
|
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222
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let name_1;
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223
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const objectArg_5 = get$.Optional;
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224
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name_1 = objectArg_5.Field("unit", string);
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225
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+
let code_2;
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226
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+
const objectArg_6 = get$.Optional;
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227
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code_2 = objectArg_6.Field("unitCode", string);
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228
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let matchResult_1, code_3;
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229
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if (name_1 == null) {
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230
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if (code_2 != null) {
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231
|
+
if (value(code_2) === "") {
|
|
232
|
+
matchResult_1 = 0;
|
|
233
|
+
} else {
|
|
234
|
+
matchResult_1 = 2;
|
|
235
|
+
code_3 = value(code_2);
|
|
236
|
+
}
|
|
237
|
+
} else {
|
|
238
|
+
matchResult_1 = 0;
|
|
239
|
+
}
|
|
240
|
+
} else if (code_2 != null) {
|
|
241
|
+
if (value(code_2) === "") {
|
|
242
|
+
matchResult_1 = 1;
|
|
243
|
+
} else {
|
|
244
|
+
matchResult_1 = 2;
|
|
245
|
+
code_3 = value(code_2);
|
|
246
|
+
}
|
|
247
|
+
} else {
|
|
248
|
+
matchResult_1 = 1;
|
|
249
|
+
}
|
|
250
|
+
switch (matchResult_1) {
|
|
251
|
+
case 0: {
|
|
252
|
+
unit = void 0;
|
|
253
|
+
break;
|
|
254
|
+
}
|
|
255
|
+
case 1: {
|
|
256
|
+
try {
|
|
257
|
+
unit = OntologyAnnotation.create(unwrap(name_1));
|
|
258
|
+
} catch (err_2) {
|
|
259
|
+
throw new Error(`Error while decoding unit (name:${name_1}): ${err_2}`);
|
|
260
|
+
}
|
|
261
|
+
break;
|
|
262
|
+
}
|
|
263
|
+
default:
|
|
264
|
+
try {
|
|
265
|
+
unit = OntologyAnnotation.fromTermAnnotation(code_3, unwrap(name_1));
|
|
266
|
+
} catch (err_3) {
|
|
267
|
+
throw new Error(`Error while decoding unit (name:${name_1}, code:${code_3}): ${err_3}`);
|
|
268
|
+
}
|
|
269
|
+
}
|
|
270
|
+
return create(alternateName, measurementMethod, description, category, (value$1 = (objectArg_7 = get$.Optional, objectArg_7.Field("value", AnnotationValue_decoder)), code_4 = (objectArg_8 = get$.Optional, objectArg_8.Field("valueCode", string)), value$1 == null && code_4 == null ? void 0 : (() => {
|
|
271
|
+
try {
|
|
272
|
+
return Value.fromOptions(value$1, void 0, code_4);
|
|
273
|
+
} catch (err_4) {
|
|
274
|
+
throw new Error(`Error while decoding value ${value$1},${code_4}: ${err_4}`);
|
|
275
|
+
}
|
|
276
|
+
})()), unit);
|
|
277
|
+
});
|
|
278
|
+
}
|
|
279
|
+
|
|
280
|
+
export { decoder, encoder, genID };
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { FSharpList } from '@fable-org/fable-library-js/List.js';
|
|
2
2
|
import { Option } from '@fable-org/fable-library-js/Option.js';
|
|
3
|
-
import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.
|
|
3
|
+
import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
4
4
|
import { Publication } from '../Core/Publication.js';
|
|
5
5
|
import { IMap } from '@fable-org/fable-library-js/Util.js';
|
|
6
6
|
export declare function encoder(oa: Publication): IEncodable;
|
|
@@ -0,0 +1,123 @@
|
|
|
1
|
+
import { ofArray, choose } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
2
|
+
import { unwrap, map, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
3
|
+
import { tryInclude, tryIncludeSeq } from './Encode.js';
|
|
4
|
+
import { OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_encoder, OntologyAnnotation_ROCrate_encoderDefinedTerm } from './OntologyAnnotation.js';
|
|
5
|
+
import { decoder as decoder$1, ROCrate_decoderDisambiguatingDescription, encoder as encoder$1, ROCrate_encoderDisambiguatingDescription, ISAJson_encoder as ISAJson_encoder$1 } from './Comment.js';
|
|
6
|
+
import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
7
|
+
import { Publication } from '../Core/Publication.js';
|
|
8
|
+
import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
|
|
9
|
+
import { Decode_noAdditionalProperties, Decode_uri } from './Decode.js';
|
|
10
|
+
import { replace } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
11
|
+
import { ROCrate_decodeAuthorListString, ROCrate_encodeAuthorListString } from './Person.js';
|
|
12
|
+
import { context_jsonvalue } from './context/rocrate/isa_publication_context.js';
|
|
13
|
+
|
|
14
|
+
function encoder(oa) {
|
|
15
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("pubMedID", (value) => ({
|
|
16
|
+
Encode(helpers) {
|
|
17
|
+
return helpers.encodeString(value);
|
|
18
|
+
}
|
|
19
|
+
}), oa.PubMedID), tryInclude("doi", (value_2) => ({
|
|
20
|
+
Encode(helpers_1) {
|
|
21
|
+
return helpers_1.encodeString(value_2);
|
|
22
|
+
}
|
|
23
|
+
}), oa.DOI), tryInclude("authorList", (value_4) => ({
|
|
24
|
+
Encode(helpers_2) {
|
|
25
|
+
return helpers_2.encodeString(value_4);
|
|
26
|
+
}
|
|
27
|
+
}), oa.Authors), tryInclude("title", (value_6) => ({
|
|
28
|
+
Encode(helpers_3) {
|
|
29
|
+
return helpers_3.encodeString(value_6);
|
|
30
|
+
}
|
|
31
|
+
}), oa.Title), tryInclude("status", OntologyAnnotation_encoder, oa.Status), tryIncludeSeq("comments", encoder$1, oa.Comments)]));
|
|
32
|
+
return {
|
|
33
|
+
Encode(helpers_4) {
|
|
34
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
|
|
35
|
+
return helpers_4.encodeObject(arg);
|
|
36
|
+
}
|
|
37
|
+
};
|
|
38
|
+
}
|
|
39
|
+
const decoder = object((get$) => {
|
|
40
|
+
let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5;
|
|
41
|
+
return new Publication(unwrap((objectArg = get$.Optional, objectArg.Field("pubMedID", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("doi", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("authorList", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("title", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("status", OntologyAnnotation_decoder))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("comments", arg_11))));
|
|
42
|
+
});
|
|
43
|
+
function ROCrate_genID(p) {
|
|
44
|
+
const matchValue = p.DOI;
|
|
45
|
+
if (matchValue == null) {
|
|
46
|
+
const matchValue_1 = p.PubMedID;
|
|
47
|
+
if (matchValue_1 == null) {
|
|
48
|
+
const matchValue_2 = p.Title;
|
|
49
|
+
if (matchValue_2 == null) {
|
|
50
|
+
return "#EmptyPublication";
|
|
51
|
+
} else {
|
|
52
|
+
return "#Pub_" + replace(value(matchValue_2), " ", "_");
|
|
53
|
+
}
|
|
54
|
+
} else {
|
|
55
|
+
return value(matchValue_1);
|
|
56
|
+
}
|
|
57
|
+
} else {
|
|
58
|
+
return value(matchValue);
|
|
59
|
+
}
|
|
60
|
+
}
|
|
61
|
+
function ROCrate_encoder(oa) {
|
|
62
|
+
let value;
|
|
63
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(oa), {
|
|
64
|
+
Encode(helpers) {
|
|
65
|
+
return helpers.encodeString(value);
|
|
66
|
+
}
|
|
67
|
+
})], ["@type", {
|
|
68
|
+
Encode(helpers_1) {
|
|
69
|
+
return helpers_1.encodeString("Publication");
|
|
70
|
+
}
|
|
71
|
+
}], tryInclude("pubMedID", (value_2) => ({
|
|
72
|
+
Encode(helpers_2) {
|
|
73
|
+
return helpers_2.encodeString(value_2);
|
|
74
|
+
}
|
|
75
|
+
}), oa.PubMedID), tryInclude("doi", (value_4) => ({
|
|
76
|
+
Encode(helpers_3) {
|
|
77
|
+
return helpers_3.encodeString(value_4);
|
|
78
|
+
}
|
|
79
|
+
}), oa.DOI), tryInclude("authorList", ROCrate_encodeAuthorListString, oa.Authors), tryInclude("title", (value_6) => ({
|
|
80
|
+
Encode(helpers_4) {
|
|
81
|
+
return helpers_4.encodeString(value_6);
|
|
82
|
+
}
|
|
83
|
+
}), oa.Title), tryInclude("status", OntologyAnnotation_ROCrate_encoderDefinedTerm, oa.Status), tryIncludeSeq("comments", ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue]]));
|
|
84
|
+
return {
|
|
85
|
+
Encode(helpers_5) {
|
|
86
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_5)], values_1);
|
|
87
|
+
return helpers_5.encodeObject(arg);
|
|
88
|
+
}
|
|
89
|
+
};
|
|
90
|
+
}
|
|
91
|
+
const ROCrate_decoder = object((get$) => {
|
|
92
|
+
let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5;
|
|
93
|
+
return new Publication(unwrap((objectArg = get$.Optional, objectArg.Field("pubMedID", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("doi", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("authorList", ROCrate_decodeAuthorListString))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("title", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("status", OntologyAnnotation_ROCrate_decoderDefinedTerm))), unwrap((arg_11 = resizeArray(ROCrate_decoderDisambiguatingDescription), objectArg_5 = get$.Optional, objectArg_5.Field("comments", arg_11))));
|
|
94
|
+
});
|
|
95
|
+
function ISAJson_encoder(idMap, oa) {
|
|
96
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("pubMedID", (value) => ({
|
|
97
|
+
Encode(helpers) {
|
|
98
|
+
return helpers.encodeString(value);
|
|
99
|
+
}
|
|
100
|
+
}), oa.PubMedID), tryInclude("doi", (value_2) => ({
|
|
101
|
+
Encode(helpers_1) {
|
|
102
|
+
return helpers_1.encodeString(value_2);
|
|
103
|
+
}
|
|
104
|
+
}), oa.DOI), tryInclude("authorList", (value_4) => ({
|
|
105
|
+
Encode(helpers_2) {
|
|
106
|
+
return helpers_2.encodeString(value_4);
|
|
107
|
+
}
|
|
108
|
+
}), oa.Authors), tryInclude("title", (value_6) => ({
|
|
109
|
+
Encode(helpers_3) {
|
|
110
|
+
return helpers_3.encodeString(value_6);
|
|
111
|
+
}
|
|
112
|
+
}), oa.Title), tryInclude("status", OntologyAnnotation_encoder, oa.Status), tryIncludeSeq("comments", (comment) => ISAJson_encoder$1(idMap, comment), oa.Comments)]));
|
|
113
|
+
return {
|
|
114
|
+
Encode(helpers_4) {
|
|
115
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
|
|
116
|
+
return helpers_4.encodeObject(arg);
|
|
117
|
+
}
|
|
118
|
+
};
|
|
119
|
+
}
|
|
120
|
+
const ISAJson_allowedFields = ofArray(["pubMedID", "doi", "authorList", "title", "status", "comments"]);
|
|
121
|
+
const ISAJson_decoder = Decode_noAdditionalProperties(ISAJson_allowedFields, decoder);
|
|
122
|
+
|
|
123
|
+
export { ISAJson_allowedFields, ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID, decoder, encoder };
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { IEncodable, Decoder$1 } from '../../fable_modules/Thoth.Json.Core.0.
|
|
1
|
+
import { IEncodable, Decoder$1 } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
2
2
|
import { LDContext } from '../../ROCrate/LDContext.js';
|
|
3
3
|
export declare const decoder: Decoder$1<LDContext>;
|
|
4
4
|
export declare function encoder(ctx_mut: LDContext): IEncodable;
|
|
@@ -0,0 +1,115 @@
|
|
|
1
|
+
import { ErrorReason$1_BadOneOf, ErrorReason$1_BadPrimitive } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
2
|
+
import { LDContext } from '../../ROCrate/LDContext.js';
|
|
3
|
+
import { Getters$2_$ctor_Z4BE6C149, string, Getters$2__get_Errors, resizeArray } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
|
|
4
|
+
import { getEnumerator, disposeSafe } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
5
|
+
import { isEmpty, length, head } from '../../../node_modules/@fable-org/fable-library-js/List.js';
|
|
6
|
+
import { FSharpResult$2_Error, FSharpResult$2_Ok } from '../../../node_modules/@fable-org/fable-library-js/Result.js';
|
|
7
|
+
import { initV1_2DRAFT, initV1_1 } from '../../ROCrate/ROCrateContext.js';
|
|
8
|
+
import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
9
|
+
import { map, append, toList, delay, singleton, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
10
|
+
import { seq } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
|
|
11
|
+
|
|
12
|
+
const decoder = {
|
|
13
|
+
Decode(helpers, value) {
|
|
14
|
+
let objectArg;
|
|
15
|
+
const this$ = this;
|
|
16
|
+
if (helpers.isObject(value)) {
|
|
17
|
+
const getters = Getters$2_$ctor_Z4BE6C149(helpers, value);
|
|
18
|
+
const properties = helpers.getProperties(value);
|
|
19
|
+
let result;
|
|
20
|
+
const get$ = getters;
|
|
21
|
+
const o = new LDContext();
|
|
22
|
+
const enumerator = getEnumerator(properties);
|
|
23
|
+
try {
|
|
24
|
+
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
25
|
+
const property = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
26
|
+
if (property !== "@id" && property !== "@type") {
|
|
27
|
+
o.AddMapping(property, (objectArg = get$.Required, objectArg.Field(property, string)));
|
|
28
|
+
}
|
|
29
|
+
}
|
|
30
|
+
} finally {
|
|
31
|
+
disposeSafe(enumerator);
|
|
32
|
+
}
|
|
33
|
+
result = o;
|
|
34
|
+
const matchValue = Getters$2__get_Errors(getters);
|
|
35
|
+
if (!isEmpty(matchValue)) {
|
|
36
|
+
const errors = matchValue;
|
|
37
|
+
return length(errors) > 1 ? FSharpResult$2_Error(["", ErrorReason$1_BadOneOf(errors)]) : FSharpResult$2_Error(head(matchValue));
|
|
38
|
+
} else {
|
|
39
|
+
return FSharpResult$2_Ok(result);
|
|
40
|
+
}
|
|
41
|
+
} else if (helpers.isString(value)) {
|
|
42
|
+
const s = helpers.asString(value);
|
|
43
|
+
return s === "https://w3id.org/ro/crate/1.2-DRAFT/context" ? FSharpResult$2_Ok(initV1_2DRAFT()) : s === "https://w3id.org/ro/crate/1.1/context" ? FSharpResult$2_Ok(initV1_1()) : FSharpResult$2_Error(["", ErrorReason$1_BadPrimitive("an object", value)]);
|
|
44
|
+
} else if (helpers.isArray(value)) {
|
|
45
|
+
const matchValue_1 = resizeArray(this$).Decode(helpers, value);
|
|
46
|
+
return matchValue_1.tag === /* Error */
|
|
47
|
+
1 ? FSharpResult$2_Error(matchValue_1.fields[0]) : FSharpResult$2_Ok(new LDContext(void 0, matchValue_1.fields[0]));
|
|
48
|
+
} else {
|
|
49
|
+
return FSharpResult$2_Error(["", ErrorReason$1_BadPrimitive("an object", value)]);
|
|
50
|
+
}
|
|
51
|
+
}
|
|
52
|
+
};
|
|
53
|
+
function encoder(ctx_mut) {
|
|
54
|
+
let source_4;
|
|
55
|
+
encoder:
|
|
56
|
+
while (true) {
|
|
57
|
+
const ctx = ctx_mut;
|
|
58
|
+
const matchValue = ctx.Name;
|
|
59
|
+
let matchResult;
|
|
60
|
+
if (matchValue != null) {
|
|
61
|
+
switch (value(matchValue)) {
|
|
62
|
+
case "https://w3id.org/ro/crate/1.2-DRAFT/context": {
|
|
63
|
+
matchResult = 0;
|
|
64
|
+
break;
|
|
65
|
+
}
|
|
66
|
+
case "https://w3id.org/ro/crate/1.1/context": {
|
|
67
|
+
matchResult = 1;
|
|
68
|
+
break;
|
|
69
|
+
}
|
|
70
|
+
default:
|
|
71
|
+
matchResult = 2;
|
|
72
|
+
}
|
|
73
|
+
} else {
|
|
74
|
+
matchResult = 2;
|
|
75
|
+
}
|
|
76
|
+
switch (matchResult) {
|
|
77
|
+
case 0:
|
|
78
|
+
return {
|
|
79
|
+
Encode(helpers) {
|
|
80
|
+
return helpers.encodeString("https://w3id.org/ro/crate/1.2-DRAFT/context");
|
|
81
|
+
}
|
|
82
|
+
};
|
|
83
|
+
case 1:
|
|
84
|
+
return {
|
|
85
|
+
Encode(helpers_1) {
|
|
86
|
+
return helpers_1.encodeString("https://w3id.org/ro/crate/1.1/context");
|
|
87
|
+
}
|
|
88
|
+
};
|
|
89
|
+
default: {
|
|
90
|
+
let mappings;
|
|
91
|
+
const values = map((kv) => [kv[0], {
|
|
92
|
+
Encode(helpers_2) {
|
|
93
|
+
return helpers_2.encodeString(kv[1]);
|
|
94
|
+
}
|
|
95
|
+
}], ctx.Mappings);
|
|
96
|
+
mappings = {
|
|
97
|
+
Encode(helpers_3) {
|
|
98
|
+
const arg = map((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_3)], values);
|
|
99
|
+
return helpers_3.encodeObject(arg);
|
|
100
|
+
}
|
|
101
|
+
};
|
|
102
|
+
if (ctx.BaseContexts.length === 0) {
|
|
103
|
+
return mappings;
|
|
104
|
+
} else if (ctx.BaseContexts.length === 1 && ctx.Mappings.size === 0) {
|
|
105
|
+
ctx_mut = ctx.BaseContexts[0];
|
|
106
|
+
continue encoder;
|
|
107
|
+
} else {
|
|
108
|
+
return seq((source_4 = map(encoder, ctx.BaseContexts), append(toList(delay(() => ctx.Mappings.size !== 0 ? singleton(mappings) : empty())), source_4)));
|
|
109
|
+
}
|
|
110
|
+
}
|
|
111
|
+
}
|
|
112
|
+
}
|
|
113
|
+
}
|
|
114
|
+
|
|
115
|
+
export { decoder, encoder };
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.
|
|
1
|
+
import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
2
2
|
import { LDGraph } from '../../ROCrate/LDObject.js';
|
|
3
3
|
export declare function encoder(obj: LDGraph): IEncodable;
|
|
4
4
|
export declare const decoder: Decoder$1<LDGraph>;
|
|
@@ -0,0 +1,83 @@
|
|
|
1
|
+
import { choose, isEmpty, length, head } from '../../../node_modules/@fable-org/fable-library-js/List.js';
|
|
2
|
+
import { map, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
3
|
+
import { ErrorReason$1_BadOneOf, ErrorReason$1_BadPrimitive } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
4
|
+
import { toList, delay, map as map$1, append, singleton, collect, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
5
|
+
import { tryInclude } from '../Encode.js';
|
|
6
|
+
import { decoder as decoder$1, encoder as encoder$1 } from './LDContext.js';
|
|
7
|
+
import { genericDecoder, decoder as decoder$2, genericEncoder, encoder as encoder$2 } from './LDNode.js';
|
|
8
|
+
import { seq } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
|
|
9
|
+
import { LDGraph } from '../../ROCrate/LDObject.js';
|
|
10
|
+
import { Getters$2_$ctor_Z4BE6C149, string, resizeArray, Getters$2__get_Errors } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
|
|
11
|
+
import { getEnumerator, disposeSafe } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
12
|
+
import { FSharpResult$2_Error, FSharpResult$2_Ok } from '../../../node_modules/@fable-org/fable-library-js/Result.js';
|
|
13
|
+
|
|
14
|
+
function encoder(obj) {
|
|
15
|
+
const values_2 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), toList(delay(() => append(singleton(tryInclude("@id", (value) => ({
|
|
16
|
+
Encode(helpers) {
|
|
17
|
+
return helpers.encodeString(value);
|
|
18
|
+
}
|
|
19
|
+
}), obj.Id)), delay(() => append(singleton(tryInclude("@context", encoder$1, obj.TryGetContext())), delay(() => append(collect((kv) => {
|
|
20
|
+
const l = kv[0].toLocaleLowerCase();
|
|
21
|
+
return l !== "id" && l !== "@context" && l !== "nodes" && l !== "mappings" ? singleton([kv[0], genericEncoder(kv[1])]) : empty();
|
|
22
|
+
}, obj.GetProperties(true)), delay(() => singleton(["@graph", seq(map$1(encoder$2, obj.Nodes))]))))))))));
|
|
23
|
+
return {
|
|
24
|
+
Encode(helpers_1) {
|
|
25
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_2);
|
|
26
|
+
return helpers_1.encodeObject(arg);
|
|
27
|
+
}
|
|
28
|
+
};
|
|
29
|
+
}
|
|
30
|
+
const decoder = {
|
|
31
|
+
Decode(helpers, value) {
|
|
32
|
+
let objectArg_3;
|
|
33
|
+
if (helpers.isObject(value)) {
|
|
34
|
+
const getters = Getters$2_$ctor_Z4BE6C149(helpers, value);
|
|
35
|
+
const properties = helpers.getProperties(value);
|
|
36
|
+
let result;
|
|
37
|
+
const get$ = getters;
|
|
38
|
+
let id;
|
|
39
|
+
const objectArg = get$.Optional;
|
|
40
|
+
id = objectArg.Field("@id", string);
|
|
41
|
+
let context;
|
|
42
|
+
const objectArg_1 = get$.Optional;
|
|
43
|
+
context = objectArg_1.Field("@context", decoder$1);
|
|
44
|
+
let nodes;
|
|
45
|
+
const arg_5 = resizeArray(decoder$2);
|
|
46
|
+
const objectArg_2 = get$.Required;
|
|
47
|
+
nodes = objectArg_2.Field("@graph", arg_5);
|
|
48
|
+
const o = new LDGraph(unwrap(id), void 0, unwrap(context));
|
|
49
|
+
const enumerator = getEnumerator(properties);
|
|
50
|
+
try {
|
|
51
|
+
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
52
|
+
const property = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
53
|
+
if (property !== "@id" && property !== "@graph" && property !== "@context") {
|
|
54
|
+
o.SetProperty(property, (objectArg_3 = get$.Required, objectArg_3.Field(property, genericDecoder)));
|
|
55
|
+
}
|
|
56
|
+
}
|
|
57
|
+
} finally {
|
|
58
|
+
disposeSafe(enumerator);
|
|
59
|
+
}
|
|
60
|
+
let enumerator_1 = getEnumerator(nodes);
|
|
61
|
+
try {
|
|
62
|
+
while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
|
|
63
|
+
const node = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
64
|
+
o.AddNode(node);
|
|
65
|
+
}
|
|
66
|
+
} finally {
|
|
67
|
+
disposeSafe(enumerator_1);
|
|
68
|
+
}
|
|
69
|
+
result = o;
|
|
70
|
+
const matchValue = Getters$2__get_Errors(getters);
|
|
71
|
+
if (!isEmpty(matchValue)) {
|
|
72
|
+
const errors = matchValue;
|
|
73
|
+
return length(errors) > 1 ? FSharpResult$2_Error(["", ErrorReason$1_BadOneOf(errors)]) : FSharpResult$2_Error(head(matchValue));
|
|
74
|
+
} else {
|
|
75
|
+
return FSharpResult$2_Ok(result);
|
|
76
|
+
}
|
|
77
|
+
} else {
|
|
78
|
+
return FSharpResult$2_Error(["", ErrorReason$1_BadPrimitive("an object", value)]);
|
|
79
|
+
}
|
|
80
|
+
}
|
|
81
|
+
};
|
|
82
|
+
|
|
83
|
+
export { decoder, encoder };
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.
|
|
1
|
+
import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
2
2
|
import { LDNode } from '../../ROCrate/LDObject.js';
|
|
3
3
|
export declare function genericEncoder(obj: any): IEncodable;
|
|
4
4
|
export declare function encoder(obj: LDNode): IEncodable;
|