@nfdi4plants/arctrl 3.0.0-beta.3 → 3.0.0-beta.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -0
- package/dist/ts/index.js +63 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +354 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +28 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/AsyncBuilder.js +186 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +8 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Boolean.js +24 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +31 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +574 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +59 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +30 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +48 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +120 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +680 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +655 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +105 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +320 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +204 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Native.js +10 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Numeric.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +23 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +111 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +114 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +36 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +846 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +1160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +364 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +193 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Unicode.13.0.0.js +6 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Uri.js +160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +367 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +825 -0
- package/dist/ts/ts/ARC.js +914 -0
- package/dist/ts/ts/Contract/ARC.js +52 -0
- package/dist/ts/ts/Contract/ArcAssay.js +80 -0
- package/dist/ts/ts/Contract/ArcInvestigation.js +57 -0
- package/dist/ts/ts/Contract/ArcRun.js +76 -0
- package/dist/ts/ts/Contract/ArcStudy.js +76 -0
- package/dist/ts/ts/Contract/ArcWorkflow.js +77 -0
- package/dist/ts/ts/Contract/Contract.js +45 -0
- package/dist/ts/ts/Contract/Datamap.js +221 -0
- package/dist/ts/ts/Contract/Git.js +57 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +57 -0
- package/dist/ts/ts/ContractIO/ContractIO.js +202 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +273 -0
- package/dist/ts/ts/Conversion.js +1247 -0
- package/dist/ts/ts/Core/ArcTypes.js +3393 -0
- package/dist/ts/ts/Core/Comment.js +91 -0
- package/dist/ts/ts/Core/CommentList.js +27 -0
- package/dist/ts/ts/Core/Conversion.js +923 -0
- package/dist/ts/ts/Core/Data.js +179 -0
- package/dist/ts/ts/Core/DataContext.js +108 -0
- package/dist/ts/ts/Core/DataFile.js +50 -0
- package/dist/ts/ts/Core/DataMap.js +53 -0
- package/dist/ts/ts/Core/Helper/Collections.js +323 -0
- package/dist/ts/ts/Core/Helper/HashCodes.js +35 -0
- package/dist/ts/ts/Core/Helper/Identifier.js +96 -0
- package/dist/ts/ts/Core/Helper/ORCID.js +34 -0
- package/dist/ts/ts/Core/Helper/Regex.js +296 -0
- package/dist/ts/ts/Core/Helper/SemVer.js +31 -0
- package/dist/ts/ts/Core/Helper/Url.js +32 -0
- package/dist/ts/ts/Core/IdentifierSetters.js +9 -0
- package/dist/ts/ts/Core/OntologyAnnotation.js +207 -0
- package/dist/ts/ts/Core/OntologySourceReference.js +84 -0
- package/dist/ts/ts/Core/Person.js +183 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.js +73 -0
- package/dist/ts/ts/Core/Process/Component.js +121 -0
- package/dist/ts/ts/Core/Process/Factor.js +104 -0
- package/dist/ts/ts/Core/Process/FactorValue.js +68 -0
- package/dist/ts/ts/Core/Process/Material.js +49 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +30 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +68 -0
- package/dist/ts/ts/Core/Process/MaterialType.js +28 -0
- package/dist/ts/ts/Core/Process/Process.js +136 -0
- package/dist/ts/ts/Core/Process/ProcessInput.js +207 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.js +178 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +135 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.js +56 -0
- package/dist/ts/ts/Core/Process/Protocol.js +54 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +69 -0
- package/dist/ts/ts/Core/Process/Sample.js +44 -0
- package/dist/ts/ts/Core/Process/Source.js +38 -0
- package/dist/ts/ts/Core/Publication.js +108 -0
- package/dist/ts/ts/Core/Table/ArcTable.js +889 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.js +993 -0
- package/dist/ts/ts/Core/Table/ArcTables.js +415 -0
- package/dist/ts/ts/Core/Table/CompositeCell.js +334 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.js +52 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.js +792 -0
- package/dist/ts/ts/Core/Template.js +180 -0
- package/dist/ts/ts/Core/Templates.js +75 -0
- package/dist/ts/ts/Core/URI.js +8 -0
- package/dist/ts/ts/Core/Value.js +194 -0
- package/dist/ts/ts/CrossAsync.js +20 -0
- package/dist/ts/ts/FileSystem/DefaultGitattributes.js +3 -0
- package/dist/ts/ts/FileSystem/DefaultGitignore.js +3 -0
- package/dist/ts/ts/FileSystem/FileSystem.js +48 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.js +339 -0
- package/dist/ts/ts/FileSystem/Path.js +36 -0
- package/dist/ts/ts/Json/Assay.d.ts +1 -1
- package/dist/ts/ts/Json/Assay.js +221 -0
- package/dist/ts/ts/Json/Comment.d.ts +1 -1
- package/dist/ts/ts/Json/Comment.js +112 -0
- package/dist/ts/ts/Json/Data.d.ts +1 -1
- package/dist/ts/ts/Json/Data.js +138 -0
- package/dist/ts/ts/Json/DataFile.d.ts +1 -1
- package/dist/ts/ts/Json/DataFile.js +55 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts +1 -1
- package/dist/ts/ts/Json/DataMap/DataContext.js +39 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts +1 -1
- package/dist/ts/ts/Json/DataMap/DataMap.js +27 -0
- package/dist/ts/ts/Json/Decode.d.ts +2 -2
- package/dist/ts/ts/Json/Decode.js +209 -0
- package/dist/ts/ts/Json/Encode.d.ts +1 -1
- package/dist/ts/ts/Json/Encode.js +65 -0
- package/dist/ts/ts/Json/IDTable.d.ts +1 -1
- package/dist/ts/ts/Json/IDTable.js +28 -0
- package/dist/ts/ts/Json/Investigation.d.ts +1 -1
- package/dist/ts/ts/Json/Investigation.js +229 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts +1 -1
- package/dist/ts/ts/Json/OntologyAnnotation.js +194 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts +1 -1
- package/dist/ts/ts/Json/OntologySourceReference.js +119 -0
- package/dist/ts/ts/Json/Person.d.ts +1 -1
- package/dist/ts/ts/Json/Person.js +316 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +1 -1
- package/dist/ts/ts/Json/Process/AssayMaterials.js +21 -0
- package/dist/ts/ts/Json/Process/Component.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Component.js +41 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Factor.js +53 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/FactorValue.js +44 -0
- package/dist/ts/ts/Json/Process/Material.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Material.js +112 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttribute.js +43 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +44 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts +1 -1
- package/dist/ts/ts/Json/Process/MaterialType.js +45 -0
- package/dist/ts/ts/Json/Process/Process.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Process.js +103 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessInput.js +42 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessOutput.js +35 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProcessParameterValue.js +28 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Protocol.js +166 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +1 -1
- package/dist/ts/ts/Json/Process/ProtocolParameter.js +43 -0
- package/dist/ts/ts/Json/Process/Sample.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Sample.js +165 -0
- package/dist/ts/ts/Json/Process/Source.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Source.js +133 -0
- package/dist/ts/ts/Json/Process/StudyMaterials.d.ts +1 -1
- package/dist/ts/ts/Json/Process/StudyMaterials.js +23 -0
- package/dist/ts/ts/Json/Process/Value.d.ts +1 -1
- package/dist/ts/ts/Json/Process/Value.js +41 -0
- package/dist/ts/ts/Json/PropertyValue.d.ts +1 -1
- package/dist/ts/ts/Json/PropertyValue.js +280 -0
- package/dist/ts/ts/Json/Publication.d.ts +1 -1
- package/dist/ts/ts/Json/Publication.js +123 -0
- package/dist/ts/ts/Json/ROCrate/LDContext.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDContext.js +115 -0
- package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDGraph.js +83 -0
- package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDNode.js +190 -0
- package/dist/ts/ts/Json/ROCrate/LDRef.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDRef.js +24 -0
- package/dist/ts/ts/Json/ROCrate/LDValue.d.ts +1 -1
- package/dist/ts/ts/Json/ROCrate/LDValue.js +63 -0
- package/dist/ts/ts/Json/StringTable.d.ts +1 -1
- package/dist/ts/ts/Json/StringTable.js +66 -0
- package/dist/ts/ts/Json/Study.d.ts +1 -1
- package/dist/ts/ts/Json/Study.js +326 -0
- package/dist/ts/ts/Json/Table/ArcTable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/ArcTable.js +210 -0
- package/dist/ts/ts/Json/Table/CellTable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CellTable.js +53 -0
- package/dist/ts/ts/Json/Table/CompositeCell.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CompositeCell.js +106 -0
- package/dist/ts/ts/Json/Table/CompositeHeader.d.ts +1 -1
- package/dist/ts/ts/Json/Table/CompositeHeader.js +121 -0
- package/dist/ts/ts/Json/Table/IOType.d.ts +1 -1
- package/dist/ts/ts/Json/Table/IOType.js +15 -0
- package/dist/ts/ts/Json/Table/OATable.d.ts +1 -1
- package/dist/ts/ts/Json/Table/OATable.js +50 -0
- package/dist/ts/ts/Json/Table/Templates.d.ts +1 -1
- package/dist/ts/ts/Json/Table/Templates.js +15 -0
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +29 -0
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +41 -0
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +69 -0
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +37 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +37 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +41 -0
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +25 -0
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +86 -0
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +57 -0
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +45 -0
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +33 -0
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +33 -0
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +77 -0
- package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts +1 -1
- package/dist/ts/ts/Json/context/rocrate/property_value_context.js +61 -0
- package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts +1 -1
- package/dist/ts/ts/Json.js +171 -0
- package/dist/ts/ts/JsonIO/Assay.js +77 -0
- package/dist/ts/ts/JsonIO/Investigation.js +77 -0
- package/dist/ts/ts/JsonIO/LDObject.js +77 -0
- package/dist/ts/ts/JsonIO/OntologyAnnotation.js +56 -0
- package/dist/ts/ts/JsonIO/Study.js +77 -0
- package/dist/ts/ts/JsonIO/Table/Compression.d.ts +1 -1
- package/dist/ts/ts/JsonIO/Table/Compression.js +39 -0
- package/dist/ts/ts/JsonIO/Table/Templates.d.ts +1 -1
- package/dist/ts/ts/JsonIO/Table/Templates.js +25 -0
- package/dist/ts/ts/ROCrate/Generic/Comment.js +103 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.js +624 -0
- package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +103 -0
- package/dist/ts/ts/ROCrate/Generic/File.js +184 -0
- package/dist/ts/ts/ROCrate/Generic/LabProcess.js +222 -0
- package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +257 -0
- package/dist/ts/ts/ROCrate/Generic/Organization.js +63 -0
- package/dist/ts/ts/ROCrate/Generic/Person.js +377 -0
- package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +143 -0
- package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +512 -0
- package/dist/ts/ts/ROCrate/Generic/Sample.js +131 -0
- package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +173 -0
- package/dist/ts/ts/ROCrate/Helper.js +7 -0
- package/dist/ts/ts/ROCrate/LDContext.js +288 -0
- package/dist/ts/ts/ROCrate/LDObject.js +855 -0
- package/dist/ts/ts/ROCrate/ROCrateContext.js +39 -0
- package/dist/ts/ts/ROCrateIO.d.ts +1 -1
- package/dist/ts/ts/ROCrateIO.js +58 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +149 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +63 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +108 -0
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +410 -0
- package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcAssay.js +169 -0
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +316 -0
- package/dist/ts/ts/Spreadsheet/ArcRun.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcRun.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcRun.js +136 -0
- package/dist/ts/ts/Spreadsheet/ArcStudy.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcStudy.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcStudy.js +92 -0
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +125 -0
- package/dist/ts/ts/Spreadsheet/CollectionAux.js +34 -0
- package/dist/ts/ts/Spreadsheet/DataMap.d.ts +1 -1
- package/dist/ts/ts/Spreadsheet/DataMap.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMap.js +33 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.d.ts +2 -2
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +41 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.d.ts +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +418 -0
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.d.ts +3 -3
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +85 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +90 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +58 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +85 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +133 -0
- package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +15 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +74 -0
- package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +58 -0
- package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +62 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +94 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +81 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Run.js +91 -0
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.d.ts +3 -3
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.d.ts.map +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +193 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Study.js +238 -0
- package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +105 -0
- package/dist/ts/ts/Template.Web.js +22 -0
- package/dist/ts/ts/ValidationPackages/ValidationPackage.js +53 -0
- package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +78 -0
- package/dist/ts/ts/WebRequest/WebRequest.Node.js +13 -0
- package/dist/ts/ts/WebRequest/WebRequest.js +19 -0
- package/dist/ts/ts/Xlsx.d.ts +1 -1
- package/dist/ts/ts/Xlsx.d.ts.map +1 -1
- package/dist/ts/ts/Xlsx.js +91 -0
- package/dist/ts/ts/Yaml/Encode.js +8 -0
- package/dist/ts/ts/Yaml/ValidationPackage.js +26 -0
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +40 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +344 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +103 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +19 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +17 -0
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +7 -0
- package/dist/ts/ts/fable_modules/Fable.Exceljs.1.6.0/ExcelJs.fs.js +5 -0
- package/dist/ts/ts/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +18 -0
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/Promise.fs.js +44 -0
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js +5 -0
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +142 -0
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +76 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +359 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js +344 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js +154 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsColumn.fs.js +116 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsRow.fs.js +126 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +135 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js +422 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +5 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +25 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRange.fs.js +28 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js +82 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeBase.fs.js +69 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeColumn.fs.js +42 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeRow.fs.js +29 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +348 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +86 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +68 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +12 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +54 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +33 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +63 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +66 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +544 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +31 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +38 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +79 -0
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js +57 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +235 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +16 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +45 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +89 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +480 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.js +11 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +212 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +164 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +136 -0
- package/package.json +10 -7
- package/dist/ts/__vite-browser-external-2447137e.js +0 -4
- package/dist/ts/__vite-browser-external-b3701507.cjs +0 -1
- package/dist/ts/arctrl.cjs.js +0 -5691
- package/dist/ts/arctrl.es.js +0 -35562
- package/dist/ts/arctrl.umd.js +0 -5691
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import { split } from '../FileSystem/Path.js';
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import { $007CInvestigationPath$007C_$007C } from './ArcInvestigation.js';
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import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { Contract } from './Contract.js';
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import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
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import { $007CStudyPath$007C_$007C } from './ArcStudy.js';
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import { $007CWorkflowPath$007C_$007C } from './ArcWorkflow.js';
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import { $007CRunPath$007C_$007C } from './ArcRun.js';
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import { $007CDatamapPath$007C_$007C } from './Datamap.js';
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function tryISAReadContractFromPath(path) {
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const split$1 = split(path);
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const activePatternResult = $007CInvestigationPath$007C_$007C(split$1);
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if (activePatternResult != null) {
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const p = value(activePatternResult);
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return Contract.createRead(p, "ISA_Investigation");
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} else {
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const activePatternResult_1 = $007CAssayPath$007C_$007C(split$1);
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if (activePatternResult_1 != null) {
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const p_1 = value(activePatternResult_1);
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return Contract.createRead(p_1, "ISA_Assay");
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} else {
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const activePatternResult_2 = $007CStudyPath$007C_$007C(split$1);
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if (activePatternResult_2 != null) {
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const p_2 = value(activePatternResult_2);
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return Contract.createRead(p_2, "ISA_Study");
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} else {
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const activePatternResult_3 = $007CWorkflowPath$007C_$007C(split$1);
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if (activePatternResult_3 != null) {
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const p_3 = value(activePatternResult_3);
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return Contract.createRead(p_3, "ISA_Workflow");
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} else {
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const activePatternResult_4 = $007CRunPath$007C_$007C(split$1);
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if (activePatternResult_4 != null) {
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const p_4 = value(activePatternResult_4);
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return Contract.createRead(p_4, "ISA_Run");
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} else {
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const activePatternResult_5 = $007CDatamapPath$007C_$007C(split$1);
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if (activePatternResult_5 != null) {
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const p_5 = value(activePatternResult_5);
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return Contract.createRead(p_5, "ISA_Datamap");
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} else {
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return void 0;
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}
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}
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}
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}
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}
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}
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}
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export { tryISAReadContractFromPath };
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import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
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import { combineMany, getAssayFolderPath } from '../FileSystem/Path.js';
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import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { Assay_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
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import { Contract } from './Contract.js';
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import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from '../Spreadsheet/ArcAssay.js';
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import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
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function $007CAssayPath$007C_$007C(input) {
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let matchResult;
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if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
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if (item(0, input) === "assays") {
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if (item(2, input) === "isa.assay.xlsx") {
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matchResult = 0;
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0: {
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item(1, input);
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return combineMany(input);
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}
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default:
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return void 0;
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}
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}
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function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$, WithFolder) {
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const withFolder = defaultArg(WithFolder, false);
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const path = Assay_fileNameFromIdentifier(this$.Identifier);
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const c = Contract.createCreate(path, "ISA_Assay", ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$));
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return toArray(delay(() => {
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let folderFS;
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return append(withFolder ? (folderFS = FileSystemTree.createAssaysFolder([FileSystemTree.createAssayFolder(this$.Identifier)]), collect((p) => p !== path && p !== "assays/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
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}));
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}
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function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$) {
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const path = Assay_fileNameFromIdentifier(this$.Identifier);
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return Contract.createUpdate(path, "ISA_Assay", ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$));
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}
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function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$) {
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const path = getAssayFolderPath(this$.Identifier);
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return Contract.createDelete(path);
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}
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function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c) {
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let matchResult, fsworkbook;
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if (c.Operation === "READ") {
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if (c.DTOType != null) {
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if (value(c.DTOType) === "ISA_Assay") {
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if (c.DTO != null) {
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matchResult = 0;
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fsworkbook = value(c.DTO);
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0:
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return ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(fsworkbook);
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default:
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return void 0;
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}
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}
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export { $007CAssayPath$007C_$007C, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F };
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import { combineMany } from '../FileSystem/Path.js';
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import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
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import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { Contract } from './Contract.js';
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import { ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcInvestigation.js';
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function $007CInvestigationPath$007C_$007C(input) {
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let matchResult;
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if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 1) {
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if (item(0, input) === "isa.investigation.xlsx") {
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matchResult = 0;
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0:
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return combineMany(input);
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default:
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return void 0;
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}
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}
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function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$) {
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return Contract.createUpdate("isa.investigation.xlsx", "ISA_Investigation", ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(this$));
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}
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function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c) {
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let matchResult, fsworkbook;
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if (c.Operation === "READ") {
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if (c.DTOType != null) {
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if (value(c.DTOType) === "ISA_Investigation") {
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if (c.DTO != null) {
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matchResult = 0;
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fsworkbook = value(c.DTO);
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0:
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return ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D(fsworkbook);
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default:
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return void 0;
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}
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}
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export { $007CInvestigationPath$007C_$007C, ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F };
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import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
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import { combineMany } from '../FileSystem/Path.js';
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import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { Run_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
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import { Contract } from './Contract.js';
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import { ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8 } from '../Spreadsheet/ArcRun.js';
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import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
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function $007CRunPath$007C_$007C(input) {
|
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let matchResult;
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+
if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
|
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if (item(0, input) === "runs") {
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if (item(2, input) === "isa.run.xlsx") {
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matchResult = 0;
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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} else {
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matchResult = 1;
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}
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switch (matchResult) {
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case 0: {
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item(1, input);
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return combineMany(input);
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}
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default:
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return void 0;
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}
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}
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function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$, WithFolder) {
|
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|
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const withFolder = defaultArg(WithFolder, false);
|
|
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|
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const path = Run_fileNameFromIdentifier(this$.Identifier);
|
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|
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const c = Contract.createCreate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
|
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|
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return toArray(delay(() => {
|
|
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let folderFS;
|
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return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
|
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}));
|
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}
|
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function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$) {
|
|
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|
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const path = Run_fileNameFromIdentifier(this$.Identifier);
|
|
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|
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return Contract.createUpdate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
|
|
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|
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}
|
|
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|
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function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
|
|
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|
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let matchResult, fsworkbook;
|
|
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if (c.Operation === "READ") {
|
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if (c.DTOType != null) {
|
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if (value(c.DTOType) === "ISA_Run") {
|
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if (c.DTO != null) {
|
|
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matchResult = 0;
|
|
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fsworkbook = value(c.DTO);
|
|
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|
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} else {
|
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matchResult = 1;
|
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}
|
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} else {
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matchResult = 1;
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}
|
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} else {
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matchResult = 1;
|
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}
|
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} else {
|
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matchResult = 1;
|
|
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|
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}
|
|
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|
+
switch (matchResult) {
|
|
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|
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case 0:
|
|
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|
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return ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D(fsworkbook);
|
|
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|
+
default:
|
|
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|
+
return void 0;
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
|
|
76
|
+
export { $007CRunPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F };
|
|
@@ -0,0 +1,76 @@
|
|
|
1
|
+
import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
|
|
2
|
+
import { combineMany } from '../FileSystem/Path.js';
|
|
3
|
+
import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
4
|
+
import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
5
|
+
import { Study_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
|
|
6
|
+
import { Contract } from './Contract.js';
|
|
7
|
+
import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from '../Spreadsheet/ArcStudy.js';
|
|
8
|
+
import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
9
|
+
import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
|
|
10
|
+
|
|
11
|
+
function $007CStudyPath$007C_$007C(input) {
|
|
12
|
+
let matchResult;
|
|
13
|
+
if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
|
|
14
|
+
if (item(0, input) === "studies") {
|
|
15
|
+
if (item(2, input) === "isa.study.xlsx") {
|
|
16
|
+
matchResult = 0;
|
|
17
|
+
} else {
|
|
18
|
+
matchResult = 1;
|
|
19
|
+
}
|
|
20
|
+
} else {
|
|
21
|
+
matchResult = 1;
|
|
22
|
+
}
|
|
23
|
+
} else {
|
|
24
|
+
matchResult = 1;
|
|
25
|
+
}
|
|
26
|
+
switch (matchResult) {
|
|
27
|
+
case 0: {
|
|
28
|
+
item(1, input);
|
|
29
|
+
return combineMany(input);
|
|
30
|
+
}
|
|
31
|
+
default:
|
|
32
|
+
return void 0;
|
|
33
|
+
}
|
|
34
|
+
}
|
|
35
|
+
function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$, WithFolder) {
|
|
36
|
+
const withFolder = defaultArg(WithFolder, false);
|
|
37
|
+
const path = Study_fileNameFromIdentifier(this$.Identifier);
|
|
38
|
+
const c = Contract.createCreate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$));
|
|
39
|
+
return toArray(delay(() => {
|
|
40
|
+
let folderFS;
|
|
41
|
+
return append(withFolder ? (folderFS = FileSystemTree.createStudiesFolder([FileSystemTree.createStudyFolder(this$.Identifier)]), collect((p) => p !== path && p !== "studies/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
|
|
42
|
+
}));
|
|
43
|
+
}
|
|
44
|
+
function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$) {
|
|
45
|
+
const path = Study_fileNameFromIdentifier(this$.Identifier);
|
|
46
|
+
return Contract.createUpdate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$));
|
|
47
|
+
}
|
|
48
|
+
function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c) {
|
|
49
|
+
let matchResult, fsworkbook;
|
|
50
|
+
if (c.Operation === "READ") {
|
|
51
|
+
if (c.DTOType != null) {
|
|
52
|
+
if (value(c.DTOType) === "ISA_Study") {
|
|
53
|
+
if (c.DTO != null) {
|
|
54
|
+
matchResult = 0;
|
|
55
|
+
fsworkbook = value(c.DTO);
|
|
56
|
+
} else {
|
|
57
|
+
matchResult = 1;
|
|
58
|
+
}
|
|
59
|
+
} else {
|
|
60
|
+
matchResult = 1;
|
|
61
|
+
}
|
|
62
|
+
} else {
|
|
63
|
+
matchResult = 1;
|
|
64
|
+
}
|
|
65
|
+
} else {
|
|
66
|
+
matchResult = 1;
|
|
67
|
+
}
|
|
68
|
+
switch (matchResult) {
|
|
69
|
+
case 0:
|
|
70
|
+
return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fsworkbook);
|
|
71
|
+
default:
|
|
72
|
+
return void 0;
|
|
73
|
+
}
|
|
74
|
+
}
|
|
75
|
+
|
|
76
|
+
export { $007CStudyPath$007C_$007C, ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F };
|
|
@@ -0,0 +1,77 @@
|
|
|
1
|
+
import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
|
|
2
|
+
import { combineMany } from '../FileSystem/Path.js';
|
|
3
|
+
import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
4
|
+
import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
5
|
+
import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
|
|
6
|
+
import { ArcWorkflow__get_Identifier } from '../Core/ArcTypes.js';
|
|
7
|
+
import { Contract } from './Contract.js';
|
|
8
|
+
import { ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E } from '../Spreadsheet/ArcWorkflow.js';
|
|
9
|
+
import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
10
|
+
import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
|
|
11
|
+
|
|
12
|
+
function $007CWorkflowPath$007C_$007C(input) {
|
|
13
|
+
let matchResult;
|
|
14
|
+
if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
|
|
15
|
+
if (item(0, input) === "workflows") {
|
|
16
|
+
if (item(2, input) === "isa.workflow.xlsx") {
|
|
17
|
+
matchResult = 0;
|
|
18
|
+
} else {
|
|
19
|
+
matchResult = 1;
|
|
20
|
+
}
|
|
21
|
+
} else {
|
|
22
|
+
matchResult = 1;
|
|
23
|
+
}
|
|
24
|
+
} else {
|
|
25
|
+
matchResult = 1;
|
|
26
|
+
}
|
|
27
|
+
switch (matchResult) {
|
|
28
|
+
case 0: {
|
|
29
|
+
item(1, input);
|
|
30
|
+
return combineMany(input);
|
|
31
|
+
}
|
|
32
|
+
default:
|
|
33
|
+
return void 0;
|
|
34
|
+
}
|
|
35
|
+
}
|
|
36
|
+
function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
|
|
37
|
+
const withFolder = defaultArg(WithFolder, false);
|
|
38
|
+
const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
|
|
39
|
+
const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
|
|
40
|
+
return toArray(delay(() => {
|
|
41
|
+
let folderFS;
|
|
42
|
+
return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(ArcWorkflow__get_Identifier(this$))]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
|
|
43
|
+
}));
|
|
44
|
+
}
|
|
45
|
+
function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
|
|
46
|
+
const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
|
|
47
|
+
return Contract.createUpdate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
|
|
48
|
+
}
|
|
49
|
+
function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c) {
|
|
50
|
+
let matchResult, fsworkbook;
|
|
51
|
+
if (c.Operation === "READ") {
|
|
52
|
+
if (c.DTOType != null) {
|
|
53
|
+
if (value(c.DTOType) === "ISA_Workflow") {
|
|
54
|
+
if (c.DTO != null) {
|
|
55
|
+
matchResult = 0;
|
|
56
|
+
fsworkbook = value(c.DTO);
|
|
57
|
+
} else {
|
|
58
|
+
matchResult = 1;
|
|
59
|
+
}
|
|
60
|
+
} else {
|
|
61
|
+
matchResult = 1;
|
|
62
|
+
}
|
|
63
|
+
} else {
|
|
64
|
+
matchResult = 1;
|
|
65
|
+
}
|
|
66
|
+
} else {
|
|
67
|
+
matchResult = 1;
|
|
68
|
+
}
|
|
69
|
+
switch (matchResult) {
|
|
70
|
+
case 0:
|
|
71
|
+
return ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D(fsworkbook);
|
|
72
|
+
default:
|
|
73
|
+
return void 0;
|
|
74
|
+
}
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
export { $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };
|
|
@@ -0,0 +1,45 @@
|
|
|
1
|
+
import { Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
|
|
2
|
+
import { defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
3
|
+
|
|
4
|
+
class CLITool extends Record {
|
|
5
|
+
constructor(Name, Arguments) {
|
|
6
|
+
super();
|
|
7
|
+
this.Name = Name;
|
|
8
|
+
this.Arguments = Arguments;
|
|
9
|
+
}
|
|
10
|
+
static create(name, arguments$) {
|
|
11
|
+
return new CLITool(name, arguments$);
|
|
12
|
+
}
|
|
13
|
+
}
|
|
14
|
+
class Contract extends Record {
|
|
15
|
+
constructor(Operation, Path, DTOType, DTO) {
|
|
16
|
+
super();
|
|
17
|
+
this.Operation = Operation;
|
|
18
|
+
this.Path = Path;
|
|
19
|
+
this.DTOType = DTOType;
|
|
20
|
+
this.DTO = DTO;
|
|
21
|
+
}
|
|
22
|
+
static create(op, path, { dtoType, dto }) {
|
|
23
|
+
return new Contract(op, path, dtoType, dto);
|
|
24
|
+
}
|
|
25
|
+
static createCreate(path, dtoType, dto) {
|
|
26
|
+
return new Contract("CREATE", path, dtoType, dto);
|
|
27
|
+
}
|
|
28
|
+
static createUpdate(path, dtoType, dto) {
|
|
29
|
+
return new Contract("UPDATE", path, dtoType, dto);
|
|
30
|
+
}
|
|
31
|
+
static createDelete(path) {
|
|
32
|
+
return new Contract("DELETE", path, void 0, void 0);
|
|
33
|
+
}
|
|
34
|
+
static createRead(path, dtoType) {
|
|
35
|
+
return new Contract("READ", path, dtoType, void 0);
|
|
36
|
+
}
|
|
37
|
+
static createExecute(dto, path) {
|
|
38
|
+
return new Contract("EXECUTE", defaultArg(path, ""), "Cli", dto);
|
|
39
|
+
}
|
|
40
|
+
static createRename(oldPath, newPath) {
|
|
41
|
+
return new Contract("RENAME", oldPath, void 0, newPath);
|
|
42
|
+
}
|
|
43
|
+
}
|
|
44
|
+
|
|
45
|
+
export { CLITool, Contract };
|
|
@@ -0,0 +1,221 @@
|
|
|
1
|
+
import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
|
|
2
|
+
import { combineMany } from '../FileSystem/Path.js';
|
|
3
|
+
import { safeHash, defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
4
|
+
import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
5
|
+
import { Assay_datamapFileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Workflow_datamapFileNameFromIdentifier, Run_datamapFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
|
|
6
|
+
import { Contract } from './Contract.js';
|
|
7
|
+
import { fromFsWorkbook, toFsWorkbook } from '../Spreadsheet/DataMap.js';
|
|
8
|
+
import { DataMap__set_StaticHash_Z524259A4 } from '../Core/DataMap.js';
|
|
9
|
+
|
|
10
|
+
function $007CDatamapPath$007C_$007C(input) {
|
|
11
|
+
let matchResult;
|
|
12
|
+
if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
|
|
13
|
+
if (item(0, input) === "assays") {
|
|
14
|
+
if (item(2, input) === "isa.datamap.xlsx") {
|
|
15
|
+
matchResult = 0;
|
|
16
|
+
} else {
|
|
17
|
+
matchResult = 2;
|
|
18
|
+
}
|
|
19
|
+
} else if (item(0, input) === "studies") {
|
|
20
|
+
if (item(2, input) === "isa.datamap.xlsx") {
|
|
21
|
+
matchResult = 1;
|
|
22
|
+
} else {
|
|
23
|
+
matchResult = 2;
|
|
24
|
+
}
|
|
25
|
+
} else {
|
|
26
|
+
matchResult = 2;
|
|
27
|
+
}
|
|
28
|
+
} else {
|
|
29
|
+
matchResult = 2;
|
|
30
|
+
}
|
|
31
|
+
switch (matchResult) {
|
|
32
|
+
case 0: {
|
|
33
|
+
item(1, input);
|
|
34
|
+
return combineMany(input);
|
|
35
|
+
}
|
|
36
|
+
case 1: {
|
|
37
|
+
item(1, input);
|
|
38
|
+
return combineMany(input);
|
|
39
|
+
}
|
|
40
|
+
default:
|
|
41
|
+
return void 0;
|
|
42
|
+
}
|
|
43
|
+
}
|
|
44
|
+
function ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5(this$, assayIdentifier) {
|
|
45
|
+
const path = Assay_datamapFileNameFromIdentifier(assayIdentifier);
|
|
46
|
+
return Contract.createCreate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
47
|
+
}
|
|
48
|
+
function ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(this$, assayIdentifier) {
|
|
49
|
+
const path = Assay_datamapFileNameFromIdentifier(assayIdentifier);
|
|
50
|
+
return Contract.createUpdate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
51
|
+
}
|
|
52
|
+
function ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assayIdentifier, c) {
|
|
53
|
+
const path = Assay_datamapFileNameFromIdentifier(assayIdentifier);
|
|
54
|
+
let matchResult, fsworkbook_1;
|
|
55
|
+
if (c.Operation === "READ") {
|
|
56
|
+
if (c.DTOType != null) {
|
|
57
|
+
if (value(c.DTOType) === "ISA_Datamap") {
|
|
58
|
+
if (c.DTO != null) {
|
|
59
|
+
if (value(c.DTO), c.Path === path) {
|
|
60
|
+
matchResult = 0;
|
|
61
|
+
fsworkbook_1 = value(c.DTO);
|
|
62
|
+
c.Path;
|
|
63
|
+
} else {
|
|
64
|
+
matchResult = 1;
|
|
65
|
+
}
|
|
66
|
+
} else {
|
|
67
|
+
matchResult = 1;
|
|
68
|
+
}
|
|
69
|
+
} else {
|
|
70
|
+
matchResult = 1;
|
|
71
|
+
}
|
|
72
|
+
} else {
|
|
73
|
+
matchResult = 1;
|
|
74
|
+
}
|
|
75
|
+
} else {
|
|
76
|
+
matchResult = 1;
|
|
77
|
+
}
|
|
78
|
+
switch (matchResult) {
|
|
79
|
+
case 0: {
|
|
80
|
+
const dm = fromFsWorkbook(fsworkbook_1);
|
|
81
|
+
DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
|
|
82
|
+
return dm;
|
|
83
|
+
}
|
|
84
|
+
default:
|
|
85
|
+
return void 0;
|
|
86
|
+
}
|
|
87
|
+
}
|
|
88
|
+
function ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5(this$, studyIdentifier) {
|
|
89
|
+
const path = Study_datamapFileNameFromIdentifier(studyIdentifier);
|
|
90
|
+
return Contract.createCreate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
91
|
+
}
|
|
92
|
+
function ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(this$, studyIdentifier) {
|
|
93
|
+
const path = Study_datamapFileNameFromIdentifier(studyIdentifier);
|
|
94
|
+
return Contract.createUpdate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
95
|
+
}
|
|
96
|
+
function ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(studyIdentifier, c) {
|
|
97
|
+
const path = Study_datamapFileNameFromIdentifier(studyIdentifier);
|
|
98
|
+
let matchResult, fsworkbook_1;
|
|
99
|
+
if (c.Operation === "READ") {
|
|
100
|
+
if (c.DTOType != null) {
|
|
101
|
+
if (value(c.DTOType) === "ISA_Datamap") {
|
|
102
|
+
if (c.DTO != null) {
|
|
103
|
+
if (value(c.DTO), c.Path === path) {
|
|
104
|
+
matchResult = 0;
|
|
105
|
+
fsworkbook_1 = value(c.DTO);
|
|
106
|
+
c.Path;
|
|
107
|
+
} else {
|
|
108
|
+
matchResult = 1;
|
|
109
|
+
}
|
|
110
|
+
} else {
|
|
111
|
+
matchResult = 1;
|
|
112
|
+
}
|
|
113
|
+
} else {
|
|
114
|
+
matchResult = 1;
|
|
115
|
+
}
|
|
116
|
+
} else {
|
|
117
|
+
matchResult = 1;
|
|
118
|
+
}
|
|
119
|
+
} else {
|
|
120
|
+
matchResult = 1;
|
|
121
|
+
}
|
|
122
|
+
switch (matchResult) {
|
|
123
|
+
case 0: {
|
|
124
|
+
const dm = fromFsWorkbook(fsworkbook_1);
|
|
125
|
+
DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
|
|
126
|
+
return dm;
|
|
127
|
+
}
|
|
128
|
+
default:
|
|
129
|
+
return void 0;
|
|
130
|
+
}
|
|
131
|
+
}
|
|
132
|
+
function ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(this$, workflowIdentifier) {
|
|
133
|
+
const path = Workflow_datamapFileNameFromIdentifier(workflowIdentifier);
|
|
134
|
+
return Contract.createCreate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
135
|
+
}
|
|
136
|
+
function ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(this$, workflowIdentifier) {
|
|
137
|
+
const path = Workflow_datamapFileNameFromIdentifier(workflowIdentifier);
|
|
138
|
+
return Contract.createUpdate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
139
|
+
}
|
|
140
|
+
function ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static(workflowIdentifier, c) {
|
|
141
|
+
const path = Workflow_datamapFileNameFromIdentifier(workflowIdentifier);
|
|
142
|
+
let matchResult, fsworkbook_1;
|
|
143
|
+
if (c.Operation === "READ") {
|
|
144
|
+
if (c.DTOType != null) {
|
|
145
|
+
if (value(c.DTOType) === "ISA_Datamap") {
|
|
146
|
+
if (c.DTO != null) {
|
|
147
|
+
if (value(c.DTO), c.Path === path) {
|
|
148
|
+
matchResult = 0;
|
|
149
|
+
fsworkbook_1 = value(c.DTO);
|
|
150
|
+
c.Path;
|
|
151
|
+
} else {
|
|
152
|
+
matchResult = 1;
|
|
153
|
+
}
|
|
154
|
+
} else {
|
|
155
|
+
matchResult = 1;
|
|
156
|
+
}
|
|
157
|
+
} else {
|
|
158
|
+
matchResult = 1;
|
|
159
|
+
}
|
|
160
|
+
} else {
|
|
161
|
+
matchResult = 1;
|
|
162
|
+
}
|
|
163
|
+
} else {
|
|
164
|
+
matchResult = 1;
|
|
165
|
+
}
|
|
166
|
+
switch (matchResult) {
|
|
167
|
+
case 0: {
|
|
168
|
+
const dm = fromFsWorkbook(fsworkbook_1);
|
|
169
|
+
DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
|
|
170
|
+
return dm;
|
|
171
|
+
}
|
|
172
|
+
default:
|
|
173
|
+
return void 0;
|
|
174
|
+
}
|
|
175
|
+
}
|
|
176
|
+
function ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5(this$, runIdentifier) {
|
|
177
|
+
const path = Run_datamapFileNameFromIdentifier(runIdentifier);
|
|
178
|
+
return Contract.createCreate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
179
|
+
}
|
|
180
|
+
function ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(this$, runIdentifier) {
|
|
181
|
+
const path = Run_datamapFileNameFromIdentifier(runIdentifier);
|
|
182
|
+
return Contract.createUpdate(path, "ISA_Datamap", toFsWorkbook(this$));
|
|
183
|
+
}
|
|
184
|
+
function ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(runIdentifier, c) {
|
|
185
|
+
const path = Run_datamapFileNameFromIdentifier(runIdentifier);
|
|
186
|
+
let matchResult, fsworkbook_1;
|
|
187
|
+
if (c.Operation === "READ") {
|
|
188
|
+
if (c.DTOType != null) {
|
|
189
|
+
if (value(c.DTOType) === "ISA_Datamap") {
|
|
190
|
+
if (c.DTO != null) {
|
|
191
|
+
if (value(c.DTO), c.Path === path) {
|
|
192
|
+
matchResult = 0;
|
|
193
|
+
fsworkbook_1 = value(c.DTO);
|
|
194
|
+
c.Path;
|
|
195
|
+
} else {
|
|
196
|
+
matchResult = 1;
|
|
197
|
+
}
|
|
198
|
+
} else {
|
|
199
|
+
matchResult = 1;
|
|
200
|
+
}
|
|
201
|
+
} else {
|
|
202
|
+
matchResult = 1;
|
|
203
|
+
}
|
|
204
|
+
} else {
|
|
205
|
+
matchResult = 1;
|
|
206
|
+
}
|
|
207
|
+
} else {
|
|
208
|
+
matchResult = 1;
|
|
209
|
+
}
|
|
210
|
+
switch (matchResult) {
|
|
211
|
+
case 0: {
|
|
212
|
+
const dm = fromFsWorkbook(fsworkbook_1);
|
|
213
|
+
DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
|
|
214
|
+
return dm;
|
|
215
|
+
}
|
|
216
|
+
default:
|
|
217
|
+
return void 0;
|
|
218
|
+
}
|
|
219
|
+
}
|
|
220
|
+
|
|
221
|
+
export { $007CDatamapPath$007C_$007C, ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5, ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static };
|