@nfdi4plants/arctrl 3.0.0-beta.3 → 3.0.0-beta.4

package/dist/ts/ts/Json/OntologySourceReference.js

@@ -0,0 +1,119 @@
+import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { unwrap, map, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { tryInclude, tryIncludeSeq } from './Encode.js';
+import { decoder as decoder$1, encoder as encoder$1, ISAJson_encoder as ISAJson_encoder$1 } from './Comment.js';
+import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { OntologySourceReference } from '../Core/OntologySourceReference.js';
+import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { Decode_uri } from './Decode.js';
+import { replace } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { context_jsonvalue } from './context/rocrate/isa_ontology_source_reference_context.js';
+
+function encoder(osr) {
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("description", (value) => ({
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  }), osr.Description), tryInclude("file", (value_2) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_2);
+    }
+  }), osr.File), tryInclude("name", (value_4) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_4);
+    }
+  }), osr.Name), tryInclude("version", (value_6) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_6);
+    }
+  }), osr.Version), tryIncludeSeq("comments", encoder$1, osr.Comments)]));
+  return {
+    Encode(helpers_4) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
+      return helpers_4.encodeObject(arg);
+    }
+  };
+}
+const decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, arg_9, objectArg_4;
+  return new OntologySourceReference(unwrap((objectArg = get$.Optional, objectArg.Field("description", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("file", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("name", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("version", string))), unwrap((arg_9 = resizeArray(decoder$1), objectArg_4 = get$.Optional, objectArg_4.Field("comments", arg_9))));
+});
+function ROCrate_genID(o) {
+  const matchValue = o.File;
+  if (matchValue == null) {
+    const matchValue_1 = o.Name;
+    if (matchValue_1 == null) {
+      return "#DummyOntologySourceRef";
+    } else {
+      return "#OntologySourceRef_" + replace(value(matchValue_1), " ", "_");
+    }
+  } else {
+    return value(matchValue);
+  }
+}
+function ROCrate_encoder(osr) {
+  let value;
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(osr), {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], ["@type", {
+    Encode(helpers_1) {
+      return helpers_1.encodeString("OntologySourceReference");
+    }
+  }], tryInclude("description", (value_2) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_2);
+    }
+  }), osr.Description), tryInclude("file", (value_4) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_4);
+    }
+  }), osr.File), tryInclude("name", (value_6) => ({
+    Encode(helpers_4) {
+      return helpers_4.encodeString(value_6);
+    }
+  }), osr.Name), tryInclude("version", (value_8) => ({
+    Encode(helpers_5) {
+      return helpers_5.encodeString(value_8);
+    }
+  }), osr.Version), tryIncludeSeq("comments", encoder$1, osr.Comments), ["@context", context_jsonvalue]]));
+  return {
+    Encode(helpers_6) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
+      return helpers_6.encodeObject(arg);
+    }
+  };
+}
+const ROCrate_decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, arg_9, objectArg_4;
+  return new OntologySourceReference(unwrap((objectArg = get$.Optional, objectArg.Field("description", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("file", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("name", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("version", string))), unwrap((arg_9 = resizeArray(decoder$1), objectArg_4 = get$.Optional, objectArg_4.Field("comments", arg_9))));
+});
+function ISAJson_encoder(idMap, osr) {
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("description", (value) => ({
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  }), osr.Description), tryInclude("file", (value_2) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_2);
+    }
+  }), osr.File), tryInclude("name", (value_4) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_4);
+    }
+  }), osr.Name), tryInclude("version", (value_6) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_6);
+    }
+  }), osr.Version), tryIncludeSeq("comments", (comment) => ISAJson_encoder$1(idMap, comment), osr.Comments)]));
+  return {
+    Encode(helpers_4) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
+      return helpers_4.encodeObject(arg);
+    }
+  };
+}
+const ISAJson_decoder = decoder;
+
+export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID, decoder, encoder };

package/dist/ts/ts/Json/Person.d.ts

@@ -1,6 +1,6 @@
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { Person } from '../Core/Person.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 export declare function encoder(person: Person): IEncodable;

package/dist/ts/ts/Json/Person.js

@@ -0,0 +1,316 @@
+import { ofArray, choose } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { unwrap, map as map$1, value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { tryInclude, tryIncludeSeq } from './Encode.js';
+import { OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_encoder, OntologyAnnotation_ROCrate_encoderDefinedTerm } from './OntologyAnnotation.js';
+import { decoder as decoder$1, ROCrate_decoderDisambiguatingDescription, encoder as encoder$1, ROCrate_encoderDisambiguatingDescription } from './Comment.js';
+import { map as map$2, tryPick } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { Person } from '../Core/Person.js';
+import { string, resizeArray, object, map, array } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { join, replace, split } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { context_jsonvalue as context_jsonvalue$1 } from './context/rocrate/isa_organization_context.js';
+import { context_jsonvalue, contextMinimal_jsonValue } from './context/rocrate/isa_person_context.js';
+import { map as map$3 } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { Person_setOrcidFromComments, Person_setCommentFromORCID } from '../Core/Conversion.js';
+import { encode } from './IDTable.js';
+import { Decode_objectNoAdditionalProperties } from './Decode.js';
+
+function encoder(person) {
+  const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("firstName", (value) => ({
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  }), person.FirstName), tryInclude("lastName", (value_2) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_2);
+    }
+  }), person.LastName), tryInclude("midInitials", (value_4) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_4);
+    }
+  }), person.MidInitials), tryInclude("orcid", (value_6) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_6);
+    }
+  }), person.ORCID), tryInclude("email", (value_8) => ({
+    Encode(helpers_4) {
+      return helpers_4.encodeString(value_8);
+    }
+  }), person.EMail), tryInclude("phone", (value_10) => ({
+    Encode(helpers_5) {
+      return helpers_5.encodeString(value_10);
+    }
+  }), person.Phone), tryInclude("fax", (value_12) => ({
+    Encode(helpers_6) {
+      return helpers_6.encodeString(value_12);
+    }
+  }), person.Fax), tryInclude("address", (value_14) => ({
+    Encode(helpers_7) {
+      return helpers_7.encodeString(value_14);
+    }
+  }), person.Address), tryInclude("affiliation", (value_16) => ({
+    Encode(helpers_8) {
+      return helpers_8.encodeString(value_16);
+    }
+  }), person.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person.Roles), tryIncludeSeq("comments", encoder$1, person.Comments)]));
+  return {
+    Encode(helpers_9) {
+      const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
+      return helpers_9.encodeObject(arg);
+    }
+  };
+}
+const decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+  return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string))), unwrap((arg_19 = resizeArray(OntologyAnnotation_decoder), objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19))), unwrap((arg_21 = resizeArray(decoder$1), objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21))));
+});
+function ROCrate_genID(p) {
+  const orcid = tryPick((c) => {
+    const matchValue = c.Name;
+    const matchValue_1 = c.Value;
+    let matchResult, n, v;
+    if (matchValue != null) {
+      if (matchValue_1 != null) {
+        matchResult = 0;
+        n = value(matchValue);
+        v = value(matchValue_1);
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+    switch (matchResult) {
+      case 0:
+        if ((n === "orcid" ? true : n === "Orcid") ? true : n === "ORCID") {
+          return v;
+        } else {
+          return void 0;
+        }
+      default:
+        return void 0;
+    }
+  }, p.Comments);
+  if (orcid == null) {
+    const matchValue_3 = p.EMail;
+    if (matchValue_3 == null) {
+      const matchValue_4 = p.FirstName;
+      const matchValue_5 = p.MidInitials;
+      const matchValue_6 = p.LastName;
+      let matchResult_1, fn, ln, mn, fn_1, ln_1, ln_2, fn_2;
+      if (matchValue_4 == null) {
+        if (matchValue_5 == null) {
+          if (matchValue_6 != null) {
+            matchResult_1 = 2;
+            ln_2 = value(matchValue_6);
+          } else {
+            matchResult_1 = 4;
+          }
+        } else {
+          matchResult_1 = 4;
+        }
+      } else if (matchValue_5 == null) {
+        if (matchValue_6 == null) {
+          matchResult_1 = 3;
+          fn_2 = value(matchValue_4);
+        } else {
+          matchResult_1 = 1;
+          fn_1 = value(matchValue_4);
+          ln_1 = value(matchValue_6);
+        }
+      } else if (matchValue_6 != null) {
+        matchResult_1 = 0;
+        fn = value(matchValue_4);
+        ln = value(matchValue_6);
+        mn = value(matchValue_5);
+      } else {
+        matchResult_1 = 4;
+      }
+      switch (matchResult_1) {
+        case 0:
+          return "#" + replace(fn, " ", "_") + "_" + replace(mn, " ", "_") + "_" + replace(ln, " ", "_");
+        case 1:
+          return "#" + replace(fn_1, " ", "_") + "_" + replace(ln_1, " ", "_");
+        case 2:
+          return "#" + replace(ln_2, " ", "_");
+        case 3:
+          return "#" + replace(fn_2, " ", "_");
+        default:
+          return "#EmptyPerson";
+      }
+    } else {
+      return value(matchValue_3);
+    }
+  } else {
+    return value(orcid);
+  }
+}
+function ROCrate_Affiliation_encoder(affiliation) {
+  let value_1;
+  const idStr = `#Organization_${affiliation}`;
+  const values_1 = [["@type", {
+    Encode(helpers) {
+      return helpers.encodeString("Organization");
+    }
+  }], ["@id", (value_1 = replace(idStr, " ", "_"), {
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_1);
+    }
+  })], ["name", {
+    Encode(helpers_2) {
+      return helpers_2.encodeString(affiliation);
+    }
+  }], ["@context", context_jsonvalue$1]];
+  return {
+    Encode(helpers_3) {
+      const arg = map$2((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_3)], values_1);
+      return helpers_3.encodeObject(arg);
+    }
+  };
+}
+const ROCrate_Affiliation_decoder = object((get$) => {
+  const objectArg = get$.Required;
+  return objectArg.Field("name", string);
+});
+function ROCrate_encoder(oa) {
+  let value;
+  const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(oa), {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], ["@type", {
+    Encode(helpers_1) {
+      return helpers_1.encodeString("Person");
+    }
+  }], tryInclude("orcid", (value_2) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_2);
+    }
+  }), oa.ORCID), tryInclude("firstName", (value_4) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_4);
+    }
+  }), oa.FirstName), tryInclude("lastName", (value_6) => ({
+    Encode(helpers_4) {
+      return helpers_4.encodeString(value_6);
+    }
+  }), oa.LastName), tryInclude("midInitials", (value_8) => ({
+    Encode(helpers_5) {
+      return helpers_5.encodeString(value_8);
+    }
+  }), oa.MidInitials), tryInclude("email", (value_10) => ({
+    Encode(helpers_6) {
+      return helpers_6.encodeString(value_10);
+    }
+  }), oa.EMail), tryInclude("phone", (value_12) => ({
+    Encode(helpers_7) {
+      return helpers_7.encodeString(value_12);
+    }
+  }), oa.Phone), tryInclude("fax", (value_14) => ({
+    Encode(helpers_8) {
+      return helpers_8.encodeString(value_14);
+    }
+  }), oa.Fax), tryInclude("address", (value_16) => ({
+    Encode(helpers_9) {
+      return helpers_9.encodeString(value_16);
+    }
+  }), oa.Address), tryInclude("affiliation", ROCrate_Affiliation_encoder, oa.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_ROCrate_encoderDefinedTerm, oa.Roles), tryIncludeSeq("comments", ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue]]));
+  return {
+    Encode(helpers_10) {
+      const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_10)], values_1);
+      return helpers_10.encodeObject(arg);
+    }
+  };
+}
+const ROCrate_decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+  return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", ROCrate_Affiliation_decoder))), unwrap((arg_19 = resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19))), unwrap((arg_21 = resizeArray(ROCrate_decoderDisambiguatingDescription), objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21))));
+});
+function ROCrate_encodeAuthorListString(authorList) {
+  const values_2 = map$3((name) => {
+    const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@type", {
+      Encode(helpers) {
+        return helpers.encodeString("Person");
+      }
+    }], tryInclude("name", (value_1) => ({
+      Encode(helpers_1) {
+        return helpers_1.encodeString(value_1);
+      }
+    }), name), ["@context", contextMinimal_jsonValue]]));
+    return {
+      Encode(helpers_2) {
+        const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
+        return helpers_2.encodeObject(arg);
+      }
+    };
+  }, map$3((s) => s.trim(), split(authorList, [authorList.indexOf("	") >= 0 ? "	" : authorList.indexOf(";") >= 0 ? ";" : ","], void 0, 0)));
+  return {
+    Encode(helpers_3) {
+      const arg_1 = map$3((v_3) => v_3.Encode(helpers_3), values_2);
+      return helpers_3.encodeArray(arg_1);
+    }
+  };
+}
+const ROCrate_decodeAuthorListString = map((v) => join(", ", v), array(object((get$) => {
+  let objectArg;
+  return defaultArg((objectArg = get$.Optional, objectArg.Field("name", string)), "");
+})));
+const ISAJson_allowedFields = ofArray(["@id", "firstName", "lastName", "midInitials", "email", "phone", "fax", "address", "affiliation", "roles", "comments", "@type", "@context"]);
+function ISAJson_encoder(idMap, person) {
+  const f = (person_1) => {
+    const person_2 = Person_setCommentFromORCID(person_1);
+    const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
+      Encode(helpers) {
+        return helpers.encodeString(value);
+      }
+    }), ROCrate_genID(person_2)), tryInclude("firstName", (value_2) => ({
+      Encode(helpers_1) {
+        return helpers_1.encodeString(value_2);
+      }
+    }), person_2.FirstName), tryInclude("lastName", (value_4) => ({
+      Encode(helpers_2) {
+        return helpers_2.encodeString(value_4);
+      }
+    }), person_2.LastName), tryInclude("midInitials", (value_6) => ({
+      Encode(helpers_3) {
+        return helpers_3.encodeString(value_6);
+      }
+    }), person_2.MidInitials), tryInclude("email", (value_8) => ({
+      Encode(helpers_4) {
+        return helpers_4.encodeString(value_8);
+      }
+    }), person_2.EMail), tryInclude("phone", (value_10) => ({
+      Encode(helpers_5) {
+        return helpers_5.encodeString(value_10);
+      }
+    }), person_2.Phone), tryInclude("fax", (value_12) => ({
+      Encode(helpers_6) {
+        return helpers_6.encodeString(value_12);
+      }
+    }), person_2.Fax), tryInclude("address", (value_14) => ({
+      Encode(helpers_7) {
+        return helpers_7.encodeString(value_14);
+      }
+    }), person_2.Address), tryInclude("affiliation", (value_16) => ({
+      Encode(helpers_8) {
+        return helpers_8.encodeString(value_16);
+      }
+    }), person_2.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person_2.Roles), tryIncludeSeq("comments", encoder$1, person_2.Comments)]));
+    return {
+      Encode(helpers_9) {
+        const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
+        return helpers_9.encodeObject(arg);
+      }
+    };
+  };
+  if (idMap != null) {
+    return encode(ROCrate_genID, f, person, value(idMap));
+  } else {
+    return f(person);
+  }
+}
+const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedFields, (get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
+  return Person_setOrcidFromComments(new Person(void 0, unwrap((objectArg = get$.Optional, objectArg.Field("lastName", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("firstName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("midInitials", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("email", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("phone", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("fax", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("address", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("affiliation", string))), unwrap((arg_17 = resizeArray(OntologyAnnotation_decoder), objectArg_8 = get$.Optional, objectArg_8.Field("roles", arg_17))), unwrap((arg_19 = resizeArray(decoder$1), objectArg_9 = get$.Optional, objectArg_9.Field("comments", arg_19)))));
+});
+
+export { ISAJson_allowedFields, ISAJson_decoder, ISAJson_encoder, ROCrate_Affiliation_decoder, ROCrate_Affiliation_encoder, ROCrate_decodeAuthorListString, ROCrate_decoder, ROCrate_encodeAuthorListString, ROCrate_encoder, ROCrate_genID, decoder, encoder };

package/dist/ts/ts/Json/Process/AssayMaterials.d.ts

@@ -1,6 +1,6 @@
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
-import { IEncodable } from '../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 import { Process } from '../../Core/Process/Process.js';
 export declare function encoder(idMap: Option<IMap<string, IEncodable>>, ps: FSharpList<Process>): IEncodable;

package/dist/ts/ts/Json/Process/AssayMaterials.js

@@ -0,0 +1,21 @@
+import { getSamples, getMaterials } from '../../Core/Process/ProcessSequence.js';
+import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { tryIncludeList } from '../Encode.js';
+import { ISAJson_encoder } from './Sample.js';
+import { ISAJson_encoder as ISAJson_encoder$1 } from './Material.js';
+import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+
+function encoder(idMap, ps) {
+  const samples = getSamples(ps);
+  const materials = getMaterials(ps);
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryIncludeList("samples", (oa) => ISAJson_encoder(idMap, oa), samples), tryIncludeList("otherMaterials", (c) => ISAJson_encoder$1(idMap, c), materials)]));
+  return {
+    Encode(helpers) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
+      return helpers.encodeObject(arg);
+    }
+  };
+}
+
+export { encoder };

package/dist/ts/ts/Json/Process/Component.d.ts

@@ -1,6 +1,6 @@
 import { encoder } from '../PropertyValue.js';
 import { Component } from '../../Core/Process/Component.js';
-import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 export declare const ROCrate_encoder: typeof encoder;

package/dist/ts/ts/Json/Process/Component.js

@@ -0,0 +1,41 @@
+import { decoder, encoder } from '../PropertyValue.js';
+import { Component_decomposeName_Z721C83C5, Component, Component_createAsPV, Component__get_ComponentName } from '../../Core/Process/Component.js';
+import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { tryInclude } from '../Encode.js';
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
+import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { object } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { Decode_uri } from '../Decode.js';
+
+const ROCrate_encoder = encoder;
+const ROCrate_decoder = decoder(Component_createAsPV);
+function ISAJson_encoder(idMap, c) {
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("componentName", (value) => ({
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  }), Component__get_ComponentName(c)), tryInclude("componentType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), c.ComponentType)]));
+  return {
+    Encode(helpers_1) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
+      return helpers_1.encodeObject(arg);
+    }
+  };
+}
+const ISAJson_decoder = object((get$) => {
+  let objectArg_1;
+  let name;
+  const objectArg = get$.Optional;
+  name = objectArg.Field("componentName", Decode_uri);
+  let patternInput_1;
+  if (name == null) {
+    patternInput_1 = [void 0, void 0];
+  } else {
+    const patternInput = Component_decomposeName_Z721C83C5(value(name));
+    patternInput_1 = [patternInput[0], patternInput[1]];
+  }
+  return new Component(patternInput_1[0], patternInput_1[1], (objectArg_1 = get$.Optional, objectArg_1.Field("componentType", OntologyAnnotation_ISAJson_decoder)));
+});
+
+export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder };

package/dist/ts/ts/Json/Process/Factor.d.ts

@@ -1,6 +1,6 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Factor } from '../../Core/Process/Factor.js';
-import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 export declare function genID(f: Factor): string;
 export declare function encoder(idMap: Option<IMap<string, IEncodable>>, value: Factor): IEncodable;

package/dist/ts/ts/Json/Process/Factor.js

@@ -0,0 +1,53 @@
+import { value, defaultArg, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from '../OntologyAnnotation.js';
+import { Factor } from '../../Core/Process/Factor.js';
+import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { tryInclude, tryIncludeSeq } from '../Encode.js';
+import { ISAJson_decoder, ISAJson_encoder } from '../Comment.js';
+import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { encode } from '../IDTable.js';
+import { object, string, resizeArray } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+
+function genID(f) {
+  const matchValue = f.Name;
+  if (matchValue == null) {
+    const matchValue_1 = f.FactorType;
+    if (matchValue_1 == null) {
+      return "#EmptyFactor";
+    } else {
+      return `#Factor/${OntologyAnnotation_ROCrate_genID(value(matchValue_1))}`;
+    }
+  } else {
+    return `#Factor/${value(matchValue)}`;
+  }
+}
+function encoder(idMap, value$1) {
+  const f_1 = (value_1) => {
+    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value_2) => ({
+      Encode(helpers) {
+        return helpers.encodeString(value_2);
+      }
+    }), genID(value_1)), tryInclude("factorName", (value_4) => ({
+      Encode(helpers_1) {
+        return helpers_1.encodeString(value_4);
+      }
+    }), value_1.Name), tryInclude("factorType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.FactorType), tryIncludeSeq("comments", (comment) => ISAJson_encoder(idMap, comment), defaultArg(value_1.Comments, []))]));
+    return {
+      Encode(helpers_2) {
+        const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
+        return helpers_2.encodeObject(arg);
+      }
+    };
+  };
+  if (idMap != null) {
+    return encode(genID, f_1, value$1, value(idMap));
+  } else {
+    return f_1(value$1);
+  }
+}
+const decoder = object((get$) => {
+  let objectArg, objectArg_1, arg_5, objectArg_2;
+  return new Factor((objectArg = get$.Optional, objectArg.Field("factorName", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("factorType", OntologyAnnotation_ISAJson_decoder)), (arg_5 = resizeArray(ISAJson_decoder), objectArg_2 = get$.Optional, objectArg_2.Field("comments", arg_5)));
+});
+
+export { decoder, encoder, genID };

package/dist/ts/ts/Json/Process/FactorValue.d.ts

@@ -1,6 +1,6 @@
 import { encoder } from '../PropertyValue.js';
 import { FactorValue } from '../../Core/Process/FactorValue.js';
-import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 export declare const ROCrate_encoder: typeof encoder;

package/dist/ts/ts/Json/Process/FactorValue.js

@@ -0,0 +1,44 @@
+import { decoder as decoder$2, encoder, genID } from '../PropertyValue.js';
+import { FactorValue, FactorValue_createAsPV } from '../../Core/Process/FactorValue.js';
+import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { tryInclude } from '../Encode.js';
+import { decoder, encoder as encoder$1 } from './Factor.js';
+import { decoder as decoder$1, encoder as encoder$2 } from './Value.js';
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
+import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { encode } from '../IDTable.js';
+import { object } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { Decode_uri } from '../Decode.js';
+
+const ROCrate_encoder = encoder;
+const ROCrate_decoder = decoder$2(FactorValue_createAsPV);
+function ISAJson_genID(fv) {
+  return genID(fv);
+}
+function ISAJson_encoder(idMap, fv) {
+  const f = (fv_1) => {
+    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
+      Encode(helpers) {
+        return helpers.encodeString(value);
+      }
+    }), ISAJson_genID(fv_1)), tryInclude("category", (value_2) => encoder$1(idMap, value_2), fv_1.Category), tryInclude("value", (value_3) => encoder$2(idMap, value_3), fv_1.Value), tryInclude("unit", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), fv_1.Unit)]));
+    return {
+      Encode(helpers_1) {
+        const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
+        return helpers_1.encodeObject(arg);
+      }
+    };
+  };
+  if (idMap != null) {
+    return encode(ISAJson_genID, f, fv, value(idMap));
+  } else {
+    return f(fv);
+  }
+}
+const ISAJson_decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3;
+  return new FactorValue((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("category", decoder)), (objectArg_2 = get$.Optional, objectArg_2.Field("value", decoder$1)), (objectArg_3 = get$.Optional, objectArg_3.Field("unit", OntologyAnnotation_ISAJson_decoder)));
+});
+
+export { ISAJson_decoder, ISAJson_encoder, ISAJson_genID, ROCrate_decoder, ROCrate_encoder };

package/dist/ts/ts/Json/Process/Material.d.ts

@@ -1,7 +1,7 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Material } from '../../Core/Process/Material.js';
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
-import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js';
+import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
 export declare function ROCrate_genID(m: Material): string;
 export declare function ROCrate_encoder(oa: Material): IEncodable;