@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.2

package/ISA/ISA.Json/context/rocrate/isa_person_context.js

@@ -1,31 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Person, firstName, lastName, midInitials, email, address, phone, fax, comments, roles, affiliation) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Person = Person;
-        this.firstName = firstName;
-        this.lastName = lastName;
-        this.midInitials = midInitials;
-        this.email = email;
-        this.address = address;
-        this.phone = phone;
-        this.fax = fax;
-        this.comments = comments;
-        this.roles = roles;
-        this.affiliation = affiliation;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Person.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Person", string_type], ["firstName", string_type], ["lastName", string_type], ["midInitials", string_type], ["email", string_type], ["address", string_type], ["phone", string_type], ["fax", string_type], ["comments", string_type], ["roles", string_type], ["affiliation", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Person", new Json(0, ["sdo:Person"])], ["firstName", new Json(0, ["sdo:givenName"])], ["lastName", new Json(0, ["sdo:familyName"])], ["midInitials", new Json(0, ["sdo:additionalName"])], ["email", new Json(0, ["sdo:email"])], ["address", new Json(0, ["sdo:address"])], ["phone", new Json(0, ["sdo:telephone"])], ["fax", new Json(0, ["sdo:faxNumber"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])], ["roles", new Json(0, ["sdo:jobTitle"])], ["affiliation", new Json(0, ["sdo:affiliation"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Person\": \"sdo:Person\",\r\n    \r\n    \"firstName\": \"sdo:givenName\",\r\n    \"lastName\": \"sdo:familyName\",\r\n    \"midInitials\": \"sdo:additionalName\",\r\n    \"email\": \"sdo:email\",\r\n    \"address\": \"sdo:address\",\r\n    \"phone\": \"sdo:telephone\",\r\n    \"fax\": \"sdo:faxNumber\",\r\n    \"comments\": \"sdo:disambiguatingDescription\",\r\n    \"roles\": \"sdo:jobTitle\",\r\n    \"affiliation\": \"sdo:affiliation\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_process_context.js

@@ -1,31 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Process, ArcProcess, name, executesProtocol, performer, date, previousProcess, nextProcess, input, output, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Process = Process;
-        this.ArcProcess = ArcProcess;
-        this.name = name;
-        this.executesProtocol = executesProtocol;
-        this.performer = performer;
-        this.date = date;
-        this.previousProcess = previousProcess;
-        this.nextProcess = nextProcess;
-        this.input = input;
-        this.output = output;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Process.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Process", string_type], ["ArcProcess", string_type], ["name", string_type], ["executesProtocol", string_type], ["performer", string_type], ["date", string_type], ["previousProcess", string_type], ["nextProcess", string_type], ["input", string_type], ["output", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Process", new Json(0, ["sdo:Thing"])], ["ArcProcess", new Json(0, ["arc:ARC#ARC_00000048"])], ["name", new Json(0, ["arc:ARC#ARC_00000019"])], ["executesProtocol", new Json(0, ["arc:ARC#ARC_00000086"])], ["performer", new Json(0, ["arc:ARC#ARC_00000089"])], ["date", new Json(0, ["arc:ARC#ARC_00000090"])], ["previousProcess", new Json(0, ["arc:ARC#ARC_00000091"])], ["nextProcess", new Json(0, ["arc:ARC#ARC_00000092"])], ["input", new Json(0, ["arc:ARC#ARC_00000095"])], ["output", new Json(0, ["arc:ARC#ARC_00000096"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Process\": \"sdo:Thing\",\r\n    \"ArcProcess\": \"arc:ARC#ARC_00000048\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"executesProtocol\": \"arc:ARC#ARC_00000086\",\r\n    \"performer\": \"arc:ARC#ARC_00000089\",\r\n    \"date\": \"arc:ARC#ARC_00000090\",\r\n    \"previousProcess\": \"arc:ARC#ARC_00000091\",\r\n    \"nextProcess\": \"arc:ARC#ARC_00000092\",\r\n    \"input\": \"arc:ARC#ARC_00000095\",\r\n    \"output\": \"arc:ARC#ARC_00000096\",\r\n\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_process_parameter_value_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, ProcessParameterValue, ArcProcessParameterValue, category, value, unit) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.ProcessParameterValue = ProcessParameterValue;
-        this.ArcProcessParameterValue = ArcProcessParameterValue;
-        this.category = category;
-        this.value = value;
-        this.unit = unit;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.ProcessParameterValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["ProcessParameterValue", string_type], ["ArcProcessParameterValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["ProcessParameterValue", new Json(0, ["sdo:PropertyValue"])], ["ArcProcessParameterValue", new Json(0, ["arc:ARC#ARC_00000088"])], ["category", new Json(0, ["arc:ARC#ARC_00000062"])], ["value", new Json(0, ["arc:ARC#ARC_00000087"])], ["unit", new Json(0, ["arc:ARC#ARC_00000106"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"ProcessParameterValue\": \"sdo:PropertyValue\",\r\n    \"ArcProcessParameterValue\": \"arc:ARC#ARC_00000088\",\r\n\r\n    \"category\": \"arc:ARC#ARC_00000062\",\r\n    \"value\": \"arc:ARC#ARC_00000087\",\r\n    \"unit\": \"arc:ARC#ARC_00000106\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_protocol_context.js

@@ -1,30 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Protocol, ArcProtocol, name, protocolType, description, version, components, parameters, uri, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Protocol = Protocol;
-        this.ArcProtocol = ArcProtocol;
-        this.name = name;
-        this.protocolType = protocolType;
-        this.description = description;
-        this.version = version;
-        this.components = components;
-        this.parameters = parameters;
-        this.uri = uri;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Protocol.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Protocol", string_type], ["ArcProtocol", string_type], ["name", string_type], ["protocolType", string_type], ["description", string_type], ["version", string_type], ["components", string_type], ["parameters", string_type], ["uri", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Protocol", new Json(0, ["sdo:Thing"])], ["ArcProtocol", new Json(0, ["arc:ARC#ARC_00000040"])], ["name", new Json(0, ["arc:ARC#ARC_00000019"])], ["protocolType", new Json(0, ["arc:ARC#ARC_00000060"])], ["description", new Json(0, ["arc:ARC#ARC_00000004"])], ["version", new Json(0, ["arc:ARC#ARC_00000020"])], ["components", new Json(0, ["arc:ARC#ARC_00000064"])], ["parameters", new Json(0, ["arc:ARC#ARC_00000062"])], ["uri", new Json(0, ["arc:ARC#ARC_00000061"])], ["comments", new Json(0, ["arc:ARC#ARC_00000016"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Protocol\": \"sdo:Thing\",\r\n    \"ArcProtocol\": \"arc:ARC#ARC_00000040\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"protocolType\": \"arc:ARC#ARC_00000060\",\r\n    \"description\": \"arc:ARC#ARC_00000004\",\r\n    \"version\": \"arc:ARC#ARC_00000020\",\r\n    \"components\": \"arc:ARC#ARC_00000064\",\r\n    \"parameters\": \"arc:ARC#ARC_00000062\",\r\n    \"uri\": \"arc:ARC#ARC_00000061\",\r\n    \"comments\": \"arc:ARC#ARC_00000016\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_publication_context.js

@@ -1,27 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Publication, pubMedID, doi, title, status, authorList, comments) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Publication = Publication;
-        this.pubMedID = pubMedID;
-        this.doi = doi;
-        this.title = title;
-        this.status = status;
-        this.authorList = authorList;
-        this.comments = comments;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Publication.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Publication", string_type], ["pubMedID", string_type], ["doi", string_type], ["title", string_type], ["status", string_type], ["authorList", string_type], ["comments", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Publication", new Json(0, ["sdo:ScholarlyArticle"])], ["pubMedID", new Json(0, ["sdo:url"])], ["doi", new Json(0, ["sdo:sameAs"])], ["title", new Json(0, ["sdo:headline"])], ["status", new Json(0, ["sdo:creativeWorkStatus"])], ["authorList", new Json(0, ["sdo:author"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Publication\": \"sdo:ScholarlyArticle\",\r\n    \r\n    \"pubMedID\": \"sdo:url\",\r\n    \"doi\": \"sdo:sameAs\",\r\n    \"title\": \"sdo:headline\",\r\n    \"status\": \"sdo:creativeWorkStatus\",\r\n    \"authorList\": \"sdo:author\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_sample_context.js

@@ -1,26 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Sample, ArcSample, name, characteristics, factorValues, derivesFrom) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Sample = Sample;
-        this.ArcSample = ArcSample;
-        this.name = name;
-        this.characteristics = characteristics;
-        this.factorValues = factorValues;
-        this.derivesFrom = derivesFrom;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Sample.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Sample", string_type], ["ArcSample", string_type], ["name", string_type], ["characteristics", string_type], ["factorValues", string_type], ["derivesFrom", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Sample", new Json(0, ["sdo:Thing"])], ["ArcSample", new Json(0, ["arc:ARC#ARC_00000070"])], ["name", new Json(0, ["arc:name"])], ["characteristics", new Json(0, ["arc:ARC#ARC_00000080"])], ["factorValues", new Json(0, ["arc:ARC#ARC_00000083"])], ["derivesFrom", new Json(0, ["arc:ARC#ARC_00000082"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Sample\": \"sdo:Thing\",\r\n    \"ArcSample\": \"arc:ARC#ARC_00000070\",\r\n\r\n    \"name\": \"arc:name\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\",\r\n    \"factorValues\": \"arc:ARC#ARC_00000083\",\r\n    \"derivesFrom\": \"arc:ARC#ARC_00000082\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_source_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Source, ArcSource, identifier, characteristics, name) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Source = Source;
-        this.ArcSource = ArcSource;
-        this.identifier = identifier;
-        this.characteristics = characteristics;
-        this.name = name;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Source.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Source", string_type], ["ArcSource", string_type], ["identifier", string_type], ["characteristics", string_type], ["name", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Source", new Json(0, ["sdo:Thing"])], ["ArcSource", new Json(0, ["arc:ARC#ARC_00000071"])], ["identifier", new Json(0, ["sdo:identifier"])], ["name", new Json(0, ["arc:ARC#ARC_00000019"])], ["characteristics", new Json(0, ["arc:ARC#ARC_00000080"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Source\": \"sdo:Thing\",\r\n    \"ArcSource\": \"arc:ARC#ARC_00000071\",\r\n\r\n    \"identifier\": \"sdo:identifier\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/isa_study_context.js

@@ -1,42 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, Study, ArcStudy, identifier, title, description, submissionDate, publicReleaseDate, publications, people, assays, filename, comments, protocols, materials, otherMaterials, sources, samples, processSequence, factors, characteristicCategories, unitCategories, studyDesignDescriptors) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.Study = Study;
-        this.ArcStudy = ArcStudy;
-        this.identifier = identifier;
-        this.title = title;
-        this.description = description;
-        this.submissionDate = submissionDate;
-        this.publicReleaseDate = publicReleaseDate;
-        this.publications = publications;
-        this.people = people;
-        this.assays = assays;
-        this.filename = filename;
-        this.comments = comments;
-        this.protocols = protocols;
-        this.materials = materials;
-        this.otherMaterials = otherMaterials;
-        this.sources = sources;
-        this.samples = samples;
-        this.processSequence = processSequence;
-        this.factors = factors;
-        this.characteristicCategories = characteristicCategories;
-        this.unitCategories = unitCategories;
-        this.studyDesignDescriptors = studyDesignDescriptors;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Study.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Study", string_type], ["ArcStudy", string_type], ["identifier", string_type], ["title", string_type], ["description", string_type], ["submissionDate", string_type], ["publicReleaseDate", string_type], ["publications", string_type], ["people", string_type], ["assays", string_type], ["filename", string_type], ["comments", string_type], ["protocols", string_type], ["materials", string_type], ["otherMaterials", string_type], ["sources", string_type], ["samples", string_type], ["processSequence", string_type], ["factors", string_type], ["characteristicCategories", string_type], ["unitCategories", string_type], ["studyDesignDescriptors", string_type]]);
-}
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Study", new Json(0, ["sdo:Dataset"])], ["ArcStudy", new Json(0, ["arc:ARC#ARC_00000014"])], ["identifier", new Json(0, ["sdo:identifier"])], ["title", new Json(0, ["sdo:headline"])], ["description", new Json(0, ["sdo:description"])], ["submissionDate", new Json(0, ["sdo:dateCreated"])], ["publicReleaseDate", new Json(0, ["sdo:datePublished"])], ["publications", new Json(0, ["sdo:citation"])], ["people", new Json(0, ["sdo:creator"])], ["assays", new Json(0, ["sdo:hasPart"])], ["filename", new Json(0, ["sdo:description"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])], ["protocols", new Json(0, ["arc:ARC#ARC_00000039"])], ["materials", new Json(0, ["arc:ARC#ARC_00000045"])], ["otherMaterials", new Json(0, ["arc:ARC#ARC_00000045"])], ["sources", new Json(0, ["arc:ARC#ARC_00000045"])], ["samples", new Json(0, ["arc:ARC#ARC_00000045"])], ["processSequence", new Json(0, ["arc:ARC#ARC_00000047"])], ["factors", new Json(0, ["arc:ARC#ARC_00000043"])], ["characteristicCategories", new Json(0, ["arc:ARC#ARC_00000049"])], ["unitCategories", new Json(0, ["arc:ARC#ARC_00000051"])], ["studyDesignDescriptors", new Json(0, ["arc:ARC#ARC_00000037"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Study\": \"sdo:Dataset\",\r\n    \"ArcStudy\": \"arc:ARC#ARC_00000014\",\r\n\r\n    \"identifier\": \"sdo:identifier\",\r\n    \"title\": \"sdo:headline\",\r\n    \"description\": \"sdo:description\",\r\n    \"submissionDate\": \"sdo:dateCreated\",\r\n    \"publicReleaseDate\": \"sdo:datePublished\",\r\n    \"publications\": \"sdo:citation\",\r\n    \"people\": \"sdo:creator\",\r\n    \"assays\": \"sdo:hasPart\",\r\n    \"filename\": \"sdo:description\",\r\n    \"comments\": \"sdo:disambiguatingDescription\",\r\n\r\n    \"protocols\": \"arc:ARC#ARC_00000039\",\r\n    \"materials\": \"arc:ARC#ARC_00000045\",\r\n    \"otherMaterials\": \"arc:ARC#ARC_00000045\",\r\n    \"sources\": \"arc:ARC#ARC_00000045\",\r\n    \"samples\": \"arc:ARC#ARC_00000045\",\r\n    \"processSequence\": \"arc:ARC#ARC_00000047\",\r\n    \"factors\": \"arc:ARC#ARC_00000043\",\r\n    \"characteristicCategories\": \"arc:ARC#ARC_00000049\",\r\n    \"unitCategories\": \"arc:ARC#ARC_00000051\",\r\n    \"studyDesignDescriptors\": \"arc:ARC#ARC_00000037\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Json/context/rocrate/rocrate_context.js

@@ -1,25 +0,0 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-
-export class IContext extends Record {
-    constructor(sdo, arc, CreativeWork, about, conformsTo) {
-        super();
-        this.sdo = sdo;
-        this.arc = arc;
-        this.CreativeWork = CreativeWork;
-        this.about = about;
-        this.conformsTo = conformsTo;
-    }
-}
-
-export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.ROCrate.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["CreativeWork", string_type], ["about", string_type], ["conformsTo", string_type]]);
-}
-
-export const conformsTo_jsonvalue = new Json(5, [[["@id", new Json(0, ["https://w3id.org/ro/crate/1.1"])]]]);
-
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["CreativeWork", new Json(0, ["sdo:CreativeWork"])], ["about", new Json(0, ["sdo:about"])], ["conformsTo", new Json(0, ["sdo:conformsTo"])]]]);
-
-export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n    \r\n    \"CreativeWork\": \"sdo:CreativeWork\",\r\n\r\n    \"about\": \"sdo:about\",\r\n    \"conformsTo\": \"sdo:conformsTo\"\r\n  }\r\n}\r\n    ";
-

package/ISA/ISA.Spreadsheet/Metadata/OntologyAnnotation.js

@@ -1,65 +0,0 @@
-import { reverse, cons, iterateIndexed, empty, ofArray, map, toArray, initialize, singleton, length } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
-import { SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValue_11FD62A8, SparseTable__TryGetValueDefault_5BAE6133, SparseTable_GetEmptyComments_651559CC } from "./SparseTable.js";
-import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
-import { Option_fromValueWithDefault } from "./Conversions.js";
-import { Comment_toString, Comment_fromString } from "./Comment.js";
-import { unwrap } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
-import { addToDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
-import { List_distinct } from "../../../fable_modules/fable-library-js.4.13.0/Seq2.js";
-import { stringHash } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
-
-export function fromSparseTable(label, labelTSR, labelTAN, matrix) {
-    if ((matrix.ColumnCount === 0) && (length(matrix.CommentKeys) !== 0)) {
-        const comments = SparseTable_GetEmptyComments_651559CC(matrix);
-        return singleton(OntologyAnnotation.create(void 0, void 0, void 0, void 0, comments));
-    }
-    else {
-        return initialize(matrix.ColumnCount, (i) => {
-            const comments_1 = Option_fromValueWithDefault([], toArray(map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys)));
-            return OntologyAnnotation.fromString(unwrap(SparseTable__TryGetValue_11FD62A8(matrix, [label, i])), unwrap(SparseTable__TryGetValue_11FD62A8(matrix, [labelTSR, i])), unwrap(SparseTable__TryGetValue_11FD62A8(matrix, [labelTAN, i])), unwrap(comments_1));
-        });
-    }
-}
-
-export function toSparseTable(label, labelTSR, labelTAN, designs) {
-    const matrix = SparseTable_Create_Z2192E64B(void 0, ofArray([label, labelTAN, labelTSR]), void 0, length(designs) + 1);
-    let commentKeys = empty();
-    iterateIndexed((i, d) => {
-        const i_1 = (i + 1) | 0;
-        const oa = OntologyAnnotation.toString(d, true);
-        addToDict(matrix.Matrix, [label, i_1], oa.TermName);
-        addToDict(matrix.Matrix, [labelTAN, i_1], oa.TermAccessionNumber);
-        addToDict(matrix.Matrix, [labelTSR, i_1], oa.TermSourceREF);
-        const matchValue = d.Comments;
-        if (matchValue != null) {
-            const array = matchValue;
-            array.forEach((comment) => {
-                const patternInput = Comment_toString(comment);
-                const n = patternInput[0];
-                commentKeys = cons(n, commentKeys);
-                addToDict(matrix.Matrix, [n, i_1], patternInput[1]);
-            });
-        }
-    }, designs);
-    return new SparseTable(matrix.Matrix, matrix.Keys, reverse(List_distinct(commentKeys, {
-        Equals: (x, y) => (x === y),
-        GetHashCode: stringHash,
-    })), matrix.ColumnCount);
-}
-
-export function fromRows(prefix, label, labelTSR, labelTAN, lineNumber, rows) {
-    const labels = ofArray([label, labelTAN, labelTSR]);
-    const tupledArg = (prefix == null) ? SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber) : SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, prefix);
-    return [tupledArg[0], tupledArg[1], tupledArg[2], fromSparseTable(label, labelTSR, labelTAN, tupledArg[3])];
-}
-
-export function toRows(prefix, label, labelTSR, labelTAN, designs) {
-    const m = toSparseTable(label, labelTSR, labelTAN, designs);
-    if (prefix == null) {
-        return SparseTable_ToRows_6A3D4534(m);
-    }
-    else {
-        return SparseTable_ToRows_6A3D4534(m, prefix);
-    }
-}
-

package/Path.js

@@ -1,10 +0,0 @@
-import { combine } from "./FileSystem/Path.js";
-
-export function getAssayFolderPath(assayIdentifier) {
-    return combine("assays", assayIdentifier);
-}
-
-export function getStudyFolderPath(studyIdentifier) {
-    return combine("studies", studyIdentifier);
-}
-

package/Templates/Template.Json.js

@@ -1,90 +0,0 @@
-import { toString } from "../fable_modules/fable-library-js.4.13.0/Types.js";
-import { Json } from "../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { dict, datetimeUtc, array as array_1, guid, object, string, succeed, andThen } from "../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { Template, Organisation } from "./Template.js";
-import { ConverterOptions_$ctor } from "../ISA/ISA.Json/ConverterOptions.js";
-import { decoder as decoder_1, encoder } from "../ISA/ISA.Json/Person.js";
-import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "../ISA/ISA.Json/Ontology.js";
-import { ArcTable_decoder, ArcTable_encoder } from "../ISA/ISA.Json/ArcTypes/ArcTable.js";
-import { list as list_1 } from "../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
-import { map, delay, toList } from "../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { toString as toString_1 } from "../fable_modules/fable-library-js.4.13.0/Date.js";
-import { toText, printf, toFail } from "../fable_modules/fable-library-js.4.13.0/String.js";
-import { fromString } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { toString as toString_2 } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-import { ofArray, map as map_1 } from "../fable_modules/fable-library-js.4.13.0/List.js";
-import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
-
-export const Organisation_encode = (arg) => (new Json(0, [toString(arg)]));
-
-export const Organisation_decode = andThen((textValue) => succeed(Organisation.ofString(textValue)), string);
-
-export function Template_encode(template) {
-    let copyOfStruct;
-    let personEncoder;
-    const options = ConverterOptions_$ctor();
-    personEncoder = ((oa) => encoder(options, oa));
-    let oaEncoder;
-    const options_1 = ConverterOptions_$ctor();
-    oaEncoder = ((oa_1) => OntologyAnnotation_encoder(options_1, oa_1));
-    return new Json(5, [[["id", new Json(0, [(copyOfStruct = template.Id, copyOfStruct)])], ["table", ArcTable_encoder(template.Table)], ["name", new Json(0, [template.Name])], ["description", new Json(0, [template.Description])], ["organisation", Organisation_encode(template.Organisation)], ["version", new Json(0, [template.Version])], ["authors", list_1(toList(delay(() => map(personEncoder, template.Authors))))], ["endpoint_repositories", list_1(toList(delay(() => map(oaEncoder, template.EndpointRepositories))))], ["tags", list_1(toList(delay(() => map(oaEncoder, template.Tags))))], ["last_updated", new Json(0, [toString_1(template.LastUpdated, "O", {})])]]]);
-}
-
-export const Template_decode = (() => {
-    const personDecoder = decoder_1(ConverterOptions_$ctor());
-    const oaDecoder = OntologyAnnotation_decoder(ConverterOptions_$ctor());
-    return object((get$) => {
-        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9;
-        return Template.create((objectArg = get$.Required, objectArg.Field("id", guid)), (objectArg_1 = get$.Required, objectArg_1.Field("table", ArcTable_decoder)), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", Organisation_decode)), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), (arg_13 = array_1(personDecoder), (objectArg_6 = get$.Required, objectArg_6.Field("authors", arg_13))), (arg_15 = array_1(oaDecoder), (objectArg_7 = get$.Required, objectArg_7.Field("endpoint_repositories", arg_15))), (arg_17 = array_1(oaDecoder), (objectArg_8 = get$.Required, objectArg_8.Field("tags", arg_17))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
-    });
-})();
-
-export function Template_fromJsonString(jsonString) {
-    try {
-        const matchValue = fromString(Template_decode, jsonString);
-        if (matchValue.tag === 1) {
-            throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-        }
-        else {
-            return matchValue.fields[0];
-        }
-    }
-    catch (exn) {
-        return toFail(printf("Error. Given json string cannot be parsed to Template: %A"))(exn);
-    }
-}
-
-export function Template_toJsonString(spaces, template) {
-    return toString_2(spaces, Template_encode(template));
-}
-
-export function Templates_encode(templateList) {
-    return new Json(5, [map_1((tupledArg) => [tupledArg[0], Template_encode(tupledArg[1])], ofArray(templateList))]);
-}
-
-export const Templates_decode = dict(Template_decode);
-
-export function Templates_fromJsonString(jsonString) {
-    try {
-        const matchValue = fromString(Templates_decode, jsonString);
-        if (matchValue.tag === 1) {
-            throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-        }
-        else {
-            return matchValue.fields[0];
-        }
-    }
-    catch (exn) {
-        return toFail(printf("Error. Given json string cannot be parsed to Templates map: %A"))(exn);
-    }
-}
-
-export function Templates_toJsonString(spaces, templateList) {
-    return toString_2(spaces, Templates_encode(templateList));
-}
-
-export function ARCtrl_Template_Template__Template_ToJson_71136F3F(this$, spaces) {
-    const spaces_1 = defaultArg(spaces, 0) | 0;
-    return (template) => Template_toJsonString(spaces_1, template);
-}
-

package/Templates/Template.Web.js

@@ -1,27 +0,0 @@
-import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
-import { singleton } from "../fable_modules/fable-library-js.4.13.0/AsyncBuilder.js";
-import { downloadFile } from "../WebRequest/WebRequest.js";
-import { Templates_fromJsonString } from "./Template.Json.js";
-import { startAsPromise } from "../fable_modules/fable-library-js.4.13.0/Async.js";
-import { class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
-
-export function getTemplates(url) {
-    const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates.json");
-    return singleton.Delay(() => singleton.Bind(downloadFile(url_1), (_arg) => {
-        const mapResult = Templates_fromJsonString(_arg);
-        return singleton.Return(mapResult);
-    }));
-}
-
-export class JsWeb {
-    constructor() {
-    }
-    static getTemplates(url) {
-        return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
-    }
-}
-
-export function JsWeb_$reflection() {
-    return class_type("ARCtrl.Template.Web.JsWeb", void 0, JsWeb);
-}
-

package/Templates/Templates.js

@@ -1,82 +0,0 @@
-import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
-import { append, addRangeInPlace, collect, item, contains as contains_1 } from "../fable_modules/fable-library-js.4.13.0/Array.js";
-import { uncurry2, safeHash, equals } from "../fable_modules/fable-library-js.4.13.0/Util.js";
-import { Array_distinct } from "../fable_modules/fable-library-js.4.13.0/Seq2.js";
-import { class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
-
-export function TemplatesAux_getComparer(matchAll) {
-    if (defaultArg(matchAll, false)) {
-        return (e) => ((e_1) => (e && e_1));
-    }
-    else {
-        return (e_2) => ((e_3) => (e_2 || e_3));
-    }
-}
-
-export function TemplatesAux_filterOnTags(tagGetter, queryTags, comparer, templates) {
-    return templates.filter((t) => {
-        const templateTags = tagGetter(t);
-        let isValid = void 0;
-        for (let idx = 0; idx <= (queryTags.length - 1); idx++) {
-            const contains = contains_1(item(idx, queryTags), templateTags, {
-                Equals: equals,
-                GetHashCode: safeHash,
-            });
-            const isValid_1 = isValid;
-            if (isValid_1 != null) {
-                const maybe = isValid_1;
-                isValid = comparer(maybe, contains);
-            }
-            else {
-                isValid = contains;
-            }
-        }
-        return defaultArg(isValid, false);
-    });
-}
-
-export class Templates {
-    constructor() {
-    }
-    static getDistinctTags(templates) {
-        return Array_distinct(collect((t) => t.Tags, templates), {
-            Equals: equals,
-            GetHashCode: safeHash,
-        });
-    }
-    static getDistinctEndpointRepositories(templates) {
-        return Array_distinct(collect((t) => t.EndpointRepositories, templates), {
-            Equals: equals,
-            GetHashCode: safeHash,
-        });
-    }
-    static getDistinctOntologyAnnotations(templates) {
-        const oas = [];
-        for (let idx = 0; idx <= (templates.length - 1); idx++) {
-            const t = item(idx, templates);
-            addRangeInPlace(t.Tags, oas);
-            addRangeInPlace(t.EndpointRepositories, oas);
-        }
-        return Array_distinct(Array.from(oas), {
-            Equals: equals,
-            GetHashCode: safeHash,
-        });
-    }
-    static filterByTags(queryTags, matchAll) {
-        return (templates) => TemplatesAux_filterOnTags((t) => t.Tags, queryTags, uncurry2(TemplatesAux_getComparer(matchAll)), templates);
-    }
-    static filterByEndpointRepositories(queryTags, matchAll) {
-        return (templates) => TemplatesAux_filterOnTags((t) => t.EndpointRepositories, queryTags, uncurry2(TemplatesAux_getComparer(matchAll)), templates);
-    }
-    static filterByOntologyAnnotation(queryTags, matchAll) {
-        return (templates) => TemplatesAux_filterOnTags((t) => append(t.Tags, t.EndpointRepositories), queryTags, uncurry2(TemplatesAux_getComparer(matchAll)), templates);
-    }
-    static filterByDataPLANT(templates) {
-        return templates.filter((t) => t.Organisation.IsOfficial());
-    }
-}
-
-export function Templates_$reflection() {
-    return class_type("ARCtrl.Template.Templates", void 0, Templates);
-}
-

package/fable_modules/fable-library-js.4.13.0/MapUtil.d.ts

@@ -1,10 +0,0 @@
-import { IMap, ISet } from "./Util.js";
-import { FSharpRef } from "./Types.js";
-export declare function keyValueList(fields: Iterable<any>, caseRule?: number): {
-    [k: string]: any;
-};
-export declare function containsValue<K, V>(v: V, map: IMap<K, V>): boolean;
-export declare function tryGetValue<K, V>(map: IMap<K, V>, key: K, defaultValue: FSharpRef<V>): boolean;
-export declare function addToSet<T>(v: T, set: ISet<T>): boolean;
-export declare function addToDict<K, V>(dict: IMap<K, V>, k: K, v: V): void;
-export declare function getItemFromDict<K, V>(map: IMap<K, V>, key: K): V;