@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.2

package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Study.js

@@ -1,24 +1,25 @@
-import { Record } from "../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, list_type, string_type } from "../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Comment$_$reflection } from "../../ISA/JsonTypes/Comment.js";
-import { ofSeq, append, toArray, reverse, cons, empty, map, ofArray } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
+import { Record } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, list_type, string_type } from "../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Comment$_$reflection } from "../../Core/Comment.js";
+import { ofSeq, append, reverse, cons, empty, map, ofArray } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { Comment_toString, Comment_fromString } from "./Comment.js";
-import { SparseRowModule_fromValues, SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./SparseTable.js";
-import { Study_fileNameFromIdentifier, createMissingIdentifier } from "../../ISA/Identifier.js";
-import { addToDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
-import { defaultArg } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
-import { List_distinct } from "../../../fable_modules/fable-library-js.4.13.0/Seq2.js";
-import { stringHash } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { Option_fromValueWithDefault } from "./Conversions.js";
-import { ArcTable } from "../../ISA/ArcTypes/ArcTable.js";
-import { ArcStudy } from "../../ISA/ArcTypes/ArcTypes.js";
+import { SparseRowModule_fromValues, SparseTable_ToRows_759CAFC1, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./SparseTable.js";
+import { Study_fileNameFromIdentifier, createMissingIdentifier } from "../../Core/Helper/Identifier.js";
+import { addToDict } from "../../fable_modules/fable-library-js.4.16.0/MapUtil.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { Option_fromValueWithDefault, ResizeArray_iter } from "../../Core/Helper/Collections.js";
+import { List_distinct } from "../../fable_modules/fable-library-js.4.16.0/Seq2.js";
+import { stringHash } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { ArcStudy } from "../../Core/ArcTypes.js";
 import { toRows as toRows_1, fromRows as fromRows_1 } from "./DesignDescriptors.js";
 import { toRows as toRows_2, fromRows as fromRows_2 } from "./Publication.js";
 import { toRows as toRows_3, fromRows as fromRows_3 } from "./Factors.js";
 import { toRows as toRows_4, fromRows as fromRows_4 } from "./Assays.js";
 import { toRows as toRows_5, fromRows as fromRows_5 } from "./Protocols.js";
 import { toRows as toRows_6, fromRows as fromRows_6 } from "./Contacts.js";
-import { singleton, append as append_1, delay, collect } from "../../../fable_modules/fable-library-js.4.13.0/Seq.js";
+import { singleton, append as append_1, delay, collect } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols } from "../../Core/Conversion.js";
+import { getFactors } from "../../Core/Process/ProcessSequence.js";
 
 export class StudyInfo extends Record {
     constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, FileName, Comments) {
@@ -34,7 +35,7 @@ export class StudyInfo extends Record {
 }
 
 export function StudyInfo_$reflection() {
-    return record_type("ARCtrl.ISA.Spreadsheet.Studies.StudyInfo", [], StudyInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["FileName", string_type], ["Comments", list_type(Comment$_$reflection())]]);
+    return record_type("ARCtrl.Spreadsheet.Studies.StudyInfo", [], StudyInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["FileName", string_type], ["Comments", list_type(Comment$_$reflection())]]);
 }
 
 export function StudyInfo_create(identifier, title, description, submissionDate, publicReleaseDate, fileName, comments) {
@@ -45,12 +46,12 @@ export function StudyInfo_get_Labels() {
     return ofArray(["Study Identifier", "Study Title", "Study Description", "Study Submission Date", "Study Public Release Date", "Study File Name"]);
 }
 
-export function StudyInfo_FromSparseTable_651559CC(matrix) {
+export function StudyInfo_FromSparseTable_3ECCA699(matrix) {
     const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
     return StudyInfo_create(SparseTable__TryGetValueDefault_5BAE6133(matrix, createMissingIdentifier(), ["Study Identifier", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Title", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Description", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Submission Date", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Public Release Date", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study File Name", 0]), comments);
 }
 
-export function StudyInfo_ToSparseTable_1B3D5E9B(study) {
+export function StudyInfo_ToSparseTable_1680536E(study) {
     const matrix = SparseTable_Create_Z2192E64B(void 0, StudyInfo_get_Labels(), void 0, 2);
     let commentKeys = empty();
     const patternInput = (study.Identifier.indexOf("MISSING_IDENTIFIER_") === 0) ? ["", ""] : [study.Identifier, Study_fileNameFromIdentifier(study.Identifier)];
@@ -60,15 +61,12 @@ export function StudyInfo_ToSparseTable_1B3D5E9B(study) {
     addToDict(matrix.Matrix, ["Study Submission Date", 1], defaultArg(study.SubmissionDate, ""));
     addToDict(matrix.Matrix, ["Study Public Release Date", 1], defaultArg(study.PublicReleaseDate, ""));
     addToDict(matrix.Matrix, ["Study File Name", 1], patternInput[1]);
-    if (!(study.Comments.length === 0)) {
-        const array = study.Comments;
-        array.forEach((comment) => {
-            const patternInput_1 = Comment_toString(comment);
-            const n = patternInput_1[0];
-            commentKeys = cons(n, commentKeys);
-            addToDict(matrix.Matrix, [n, 1], patternInput_1[1]);
-        });
-    }
+    ResizeArray_iter((comment) => {
+        const patternInput_1 = Comment_toString(comment);
+        const n = patternInput_1[0];
+        commentKeys = cons(n, commentKeys);
+        addToDict(matrix.Matrix, [n, 1], patternInput_1[1]);
+    }, study.Comments);
     return new SparseTable(matrix.Matrix, matrix.Keys, reverse(List_distinct(commentKeys, {
         Equals: (x, y) => (x === y),
         GetHashCode: stringHash,
@@ -77,13 +75,16 @@ export function StudyInfo_ToSparseTable_1B3D5E9B(study) {
 
 export function StudyInfo_fromRows(lineNumber, rows) {
     const tupledArg = SparseTable_FromRows_Z5579EC29(rows, StudyInfo_get_Labels(), lineNumber);
-    return [tupledArg[0], tupledArg[1], tupledArg[2], StudyInfo_FromSparseTable_651559CC(tupledArg[3])];
+    return [tupledArg[0], tupledArg[1], tupledArg[2], StudyInfo_FromSparseTable_3ECCA699(tupledArg[3])];
 }
 
-export function StudyInfo_toRows_1B3D5E9B(study) {
-    return SparseTable_ToRows_6A3D4534(StudyInfo_ToSparseTable_1B3D5E9B(study));
+export function StudyInfo_toRows_1680536E(study) {
+    return SparseTable_ToRows_759CAFC1(StudyInfo_ToSparseTable_1680536E(study));
 }
 
+/**
+ * FACTORS AND PROTOCOLS ARE NOT USED ANYMORE, Lukas, 21.03.24
+ */
 export function fromParts(studyInfo, designDescriptors, publications, factors, assays, protocols, contacts) {
     const assayIdentifiers = map((assay) => assay.Identifier, assays);
     let arcstudy;
@@ -91,16 +92,12 @@ export function fromParts(studyInfo, designDescriptors, publications, factors, a
     const description = Option_fromValueWithDefault("", studyInfo.Description);
     const submissionDate = Option_fromValueWithDefault("", studyInfo.SubmissionDate);
     const publicReleaseDate = Option_fromValueWithDefault("", studyInfo.PublicReleaseDate);
-    const publications_1 = toArray(publications);
-    const contacts_1 = toArray(contacts);
-    const studyDesignDescriptors = toArray(designDescriptors);
-    let tables;
-    const collection = map((p) => ArcTable.fromProtocol(p), protocols);
-    tables = Array.from(collection);
+    const publications_1 = Array.from(publications);
+    const contacts_1 = Array.from(contacts);
+    const studyDesignDescriptors = Array.from(designDescriptors);
     const registeredAssayIdentifiers = Array.from(assayIdentifiers);
-    const factors_1 = toArray(factors);
-    const comments = toArray(studyInfo.Comments);
-    arcstudy = ArcStudy.make(studyInfo.Identifier, title, description, submissionDate, publicReleaseDate, publications_1, contacts_1, studyDesignDescriptors, tables, registeredAssayIdentifiers, factors_1, comments);
+    const comments = Array.from(studyInfo.Comments);
+    arcstudy = ArcStudy.make(studyInfo.Identifier, title, description, submissionDate, publicReleaseDate, publications_1, contacts_1, studyDesignDescriptors, [], registeredAssayIdentifiers, comments);
     if (arcstudy.isEmpty && (arcstudy.Identifier === "")) {
         return void 0;
     }
@@ -253,8 +250,9 @@ export function fromRows(lineNumber, en) {
 }
 
 export function toRows(study, assays) {
-    const protocols = ofSeq(collect((p) => p.GetProtocols(), study.Tables));
+    const protocols = ofSeq(collect(ARCtrl_ArcTable__ArcTable_GetProtocols, study.Tables));
+    const factors = ofSeq(collect((f) => getFactors(ARCtrl_ArcTable__ArcTable_GetProcesses(f)), study.Tables));
     const assays_1 = defaultArg(assays, ofSeq(study.GetRegisteredAssaysOrIdentifier()));
-    return delay(() => append_1(StudyInfo_toRows_1B3D5E9B(study), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY DESIGN DESCRIPTORS"])), delay(() => append_1(toRows_1("Study Design", ofArray(study.StudyDesignDescriptors)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PUBLICATIONS"])), delay(() => append_1(toRows_2("Study Publication", ofArray(study.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY FACTORS"])), delay(() => append_1(toRows_3("Study Factor", ofArray(study.Factors)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY ASSAYS"])), delay(() => append_1(toRows_4("Study Assay", assays_1), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PROTOCOLS"])), delay(() => append_1(toRows_5("Study Protocol", protocols), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY CONTACTS"])), delay(() => toRows_6("Study Person", ofArray(study.Contacts)))))))))))))))))))))))))));
+    return delay(() => append_1(StudyInfo_toRows_1680536E(study), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY DESIGN DESCRIPTORS"])), delay(() => append_1(toRows_1("Study Design", ofSeq(study.StudyDesignDescriptors)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PUBLICATIONS"])), delay(() => append_1(toRows_2("Study Publication", ofSeq(study.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY FACTORS"])), delay(() => append_1(toRows_3("Study Factor", factors), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY ASSAYS"])), delay(() => append_1(toRows_4("Study Assay", assays_1), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PROTOCOLS"])), delay(() => append_1(toRows_5("Study Protocol", protocols), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY CONTACTS"])), delay(() => toRows_6("Study Person", ofSeq(study.Contacts)))))))))))))))))))))))))));
 }
 

package/{Templates/Template.Spreadsheet.js → Spreadsheet/Template.js}

@@ -1,23 +1,23 @@
-import { toString, Record, FSharpException } from "../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, list_type, string_type, class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { toArray as toArray_1, append as append_1, reverse, map, empty, ofArray } from "../fable_modules/fable-library-js.4.13.0/List.js";
-import { toRows, fromRows, toSparseTable, fromSparseTable } from "../ISA/ISA.Spreadsheet/Metadata/OntologyAnnotation.js";
-import { Comment$_$reflection } from "../ISA/ISA/JsonTypes/Comment.js";
-import { Comment_fromString } from "../ISA/ISA.Spreadsheet/Metadata/Comment.js";
-import { SparseRowModule_fromFsRow, SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "../ISA/ISA.Spreadsheet/Metadata/SparseTable.js";
-import { createMissingIdentifier } from "../ISA/ISA/Identifier.js";
-import { addToDict } from "../fable_modules/fable-library-js.4.13.0/MapUtil.js";
-import { List_distinct } from "../fable_modules/fable-library-js.4.13.0/Seq2.js";
-import { getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.13.0/Util.js";
-import { tryPick, iterateIndexed, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { Person } from "../ISA/ISA/JsonTypes/Person.js";
-import { toArray } from "../fable_modules/fable-library-js.4.13.0/Option.js";
-import { toRows as toRows_1, fromRows as fromRows_1 } from "../ISA/ISA.Spreadsheet/Metadata/Contacts.js";
-import { parse } from "../fable_modules/fable-library-js.4.13.0/Guid.js";
-import { Template, Organisation } from "./Template.js";
+import { toString, Record, FSharpException } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, list_type, string_type, class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { ofSeq, append as append_1, reverse, map, empty, ofArray } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { toRows, fromRows, toSparseTable, fromSparseTable } from "./Metadata/OntologyAnnotation.js";
+import { Comment$_$reflection } from "../Core/Comment.js";
+import { Comment_fromString } from "./Metadata/Comment.js";
+import { SparseRowModule_fromFsRow, SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseTable_ToRows_759CAFC1, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./Metadata/SparseTable.js";
+import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
+import { addToDict } from "../fable_modules/fable-library-js.4.16.0/MapUtil.js";
+import { List_distinct } from "../fable_modules/fable-library-js.4.16.0/Seq2.js";
+import { getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { tryPick, iterateIndexed, toList, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { Person_orcidKey } from "../Core/Conversion.js";
+import { toArray } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/Contacts.js";
+import { parse } from "../fable_modules/fable-library-js.4.16.0/Guid.js";
+import { Template, Organisation } from "../Core/Template.js";
 import { FsWorksheet } from "../fable_modules/FsSpreadsheet.5.1.3/FsWorksheet.fs.js";
-import { toFsWorksheet, tryFromFsWorksheet } from "../ISA/ISA.Spreadsheet/AnnotationTable/ArcTable.js";
-import { now } from "../fable_modules/fable-library-js.4.13.0/Date.js";
+import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
+import { now } from "../fable_modules/fable-library-js.4.16.0/Date.js";
 import { FsWorkbook } from "../fable_modules/FsSpreadsheet.5.1.3/FsWorkbook.fs.js";
 
 export class TemplateReadError extends FSharpException {
@@ -28,7 +28,7 @@ export class TemplateReadError extends FSharpException {
 }
 
 export function TemplateReadError_$reflection() {
-    return class_type("ARCtrl.Template.Spreadsheet.TemplateReadError", void 0, TemplateReadError, class_type("System.Exception"));
+    return class_type("ARCtrl.Spreadsheet.TemplateReadError", void 0, TemplateReadError, class_type("System.Exception"));
 }
 
 export const Metadata_ER_labels = ofArray(["ER", "ER Term Accession Number", "ER Term Source REF"]);
@@ -83,7 +83,7 @@ export class Metadata_Template_TemplateInfo extends Record {
 }
 
 export function Metadata_Template_TemplateInfo_$reflection() {
-    return record_type("ARCtrl.Template.Spreadsheet.Metadata.Template.TemplateInfo", [], Metadata_Template_TemplateInfo, () => [["Id", string_type], ["Name", string_type], ["Version", string_type], ["Description", string_type], ["Organisation", string_type], ["Table", string_type], ["Comments", list_type(Comment$_$reflection())]]);
+    return record_type("ARCtrl.Spreadsheet.Metadata.Template.TemplateInfo", [], Metadata_Template_TemplateInfo, () => [["Id", string_type], ["Name", string_type], ["Version", string_type], ["Description", string_type], ["Organisation", string_type], ["Table", string_type], ["Comments", list_type(Comment$_$reflection())]]);
 }
 
 export function Metadata_Template_TemplateInfo_create(id, name, version, description, organisation, table, comments) {
@@ -98,12 +98,12 @@ export function Metadata_Template_TemplateInfo_get_Labels() {
     return ofArray(["Id", "Name", "Version", "Description", "Organisation", "Table"]);
 }
 
-export function Metadata_Template_TemplateInfo_FromSparseTable_651559CC(matrix) {
+export function Metadata_Template_TemplateInfo_FromSparseTable_3ECCA699(matrix) {
     const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
     return Metadata_Template_TemplateInfo_create(SparseTable__TryGetValueDefault_5BAE6133(matrix, createMissingIdentifier(), ["Id", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Name", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Version", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Description", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Organisation", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Table", 0]), comments);
 }
 
-export function Metadata_Template_TemplateInfo_ToSparseTable_2285DF3F(template) {
+export function Metadata_Template_TemplateInfo_ToSparseTable_48C39BE1(template) {
     let copyOfStruct, copyOfStruct_1;
     const matrix = SparseTable_Create_Z2192E64B(void 0, Metadata_Template_TemplateInfo_get_Labels(), void 0, 2);
     let commentKeys = empty();
@@ -121,11 +121,11 @@ export function Metadata_Template_TemplateInfo_ToSparseTable_2285DF3F(template)
 
 export function Metadata_Template_TemplateInfo_fromRows_9F97F2A(rows) {
     const tupledArg = SparseTable_FromRows_Z5579EC29(rows, Metadata_Template_TemplateInfo_get_Labels(), 0);
-    return [tupledArg[0], Metadata_Template_TemplateInfo_FromSparseTable_651559CC(tupledArg[3])];
+    return [tupledArg[0], Metadata_Template_TemplateInfo_FromSparseTable_3ECCA699(tupledArg[3])];
 }
 
-export function Metadata_Template_TemplateInfo_toRows_2285DF3F(template) {
-    return SparseTable_ToRows_6A3D4534(Metadata_Template_TemplateInfo_ToSparseTable_2285DF3F(template));
+export function Metadata_Template_TemplateInfo_toRows_48C39BE1(template) {
+    return SparseTable_ToRows_759CAFC1(Metadata_Template_TemplateInfo_ToSparseTable_48C39BE1(template));
 }
 
 export function Metadata_Template_mapDeprecatedKeys(rows) {
@@ -141,7 +141,7 @@ export function Metadata_Template_mapDeprecatedKeys(rows) {
                 case "#TAGS list":
                     return [k, "TAGS"];
                 case "Authors ORCID":
-                    return [k, `Comment[${Person.orcidKey}]`];
+                    return [k, `Comment[${Person_orcidKey}]`];
                 case "Authors Last Name":
                     return [k, "Author Last Name"];
                 case "Authors First Name":
@@ -257,15 +257,15 @@ export function Metadata_Template_fromRows(rows) {
 }
 
 export function Metadata_Template_toRows(template) {
-    return delay(() => append(singleton(SparseRowModule_fromValues(["TEMPLATE"])), delay(() => append(Metadata_Template_TemplateInfo_toRows_2285DF3F(template), delay(() => append(singleton(SparseRowModule_fromValues(["ERS"])), delay(() => append(Metadata_ER_toRows(void 0, ofArray(template.EndpointRepositories)), delay(() => append(singleton(SparseRowModule_fromValues(["TAGS"])), delay(() => append(Metadata_Tags_toRows(void 0, ofArray(template.Tags)), delay(() => append(singleton(SparseRowModule_fromValues(["AUTHORS"])), delay(() => toRows_1("Author", ofArray(template.Authors)))))))))))))))));
+    return delay(() => append(singleton(SparseRowModule_fromValues(["TEMPLATE"])), delay(() => append(Metadata_Template_TemplateInfo_toRows_48C39BE1(template), delay(() => append(singleton(SparseRowModule_fromValues(["ERS"])), delay(() => append(Metadata_ER_toRows(void 0, toList(template.EndpointRepositories)), delay(() => append(singleton(SparseRowModule_fromValues(["TAGS"])), delay(() => append(Metadata_Tags_toRows(void 0, toList(template.Tags)), delay(() => append(singleton(SparseRowModule_fromValues(["AUTHORS"])), delay(() => toRows_1("Author", ofSeq(template.Authors)))))))))))))))));
 }
 
 export function Template_fromParts(templateInfo, ers, tags, authors, table, lastUpdated) {
     const id = parse(templateInfo.Id);
     const organisation = Organisation.ofString(templateInfo.Organisation);
-    const authors_1 = toArray_1(authors);
-    const repos = toArray_1(ers);
-    const tags_1 = toArray_1(tags);
+    const authors_1 = Array.from(authors);
+    const repos = Array.from(ers);
+    const tags_1 = Array.from(tags);
     return Template.make(id, table, templateInfo.Name, templateInfo.Description, organisation, templateInfo.Version, authors_1, repos, tags_1, lastUpdated);
 }
 

package/Template.Web.js

@@ -0,0 +1,27 @@
+import { defaultArg } from "./fable_modules/fable-library-js.4.16.0/Option.js";
+import { singleton } from "./fable_modules/fable-library-js.4.16.0/AsyncBuilder.js";
+import { downloadFile } from "./WebRequest/WebRequest.js";
+import { Templates_fromJsonString } from "./Json/Table/Templates.js";
+import { startAsPromise } from "./fable_modules/fable-library-js.4.16.0/Async.js";
+import { class_type } from "./fable_modules/fable-library-js.4.16.0/Reflection.js";
+
+export function getTemplates(url) {
+    const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates.json");
+    return singleton.Delay(() => singleton.Bind(downloadFile(url_1), (_arg) => {
+        const mapResult = Templates_fromJsonString(_arg);
+        return singleton.Return(mapResult);
+    }));
+}
+
+export class WebController {
+    constructor() {
+    }
+    static getTemplates(url) {
+        return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
+    }
+}
+
+export function WebController_$reflection() {
+    return class_type("ARCtrl.Template.Web.WebController", void 0, WebController);
+}
+

package/WebRequest/WebRequest.Node.js

@@ -1,6 +1,6 @@
-import { awaitPromise } from "../fable_modules/fable-library-js.4.13.0/Async.js";
+import { awaitPromise } from "../fable_modules/fable-library-js.4.16.0/Async.js";
 import { fetch$ } from "../fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js";
-import { empty } from "../fable_modules/fable-library-js.4.13.0/List.js";
+import { empty } from "../fable_modules/fable-library-js.4.16.0/List.js";
 
 export function isNode() {
     return typeof process !== "undefined" &&

package/WebRequest/WebRequest.js

@@ -1,7 +1,7 @@
 import { downloadFile as downloadFile_1, isNode } from "./WebRequest.Node.js";
-import { singleton } from "../fable_modules/fable-library-js.4.13.0/AsyncBuilder.js";
+import { singleton } from "../fable_modules/fable-library-js.4.16.0/AsyncBuilder.js";
 import { Http_get } from "../fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js";
-import { printf, toFail } from "../fable_modules/fable-library-js.4.13.0/String.js";
+import { printf, toFail } from "../fable_modules/fable-library-js.4.16.0/String.js";
 import "isomorphic-fetch";
 
 export function downloadFile(url) {

package/Xlsx.js

@@ -0,0 +1,85 @@
+import { toFsWorkbook, fromFsWorkbook } from "./Spreadsheet/ArcAssay.js";
+import { class_type } from "./fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7, ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D } from "./Spreadsheet/ArcStudy.js";
+import { map, unwrap } from "./fable_modules/fable-library-js.4.16.0/Option.js";
+import { ofSeq } from "./fable_modules/fable-library-js.4.16.0/List.js";
+import { toLightFsWorkbook, toFsWorkbook as toFsWorkbook_1, fromFsWorkbook as fromFsWorkbook_1 } from "./Spreadsheet/ArcInvestigation.js";
+
+export class XlsxHelper_AssayXlsx {
+    constructor() {
+    }
+    fromFsWorkbook(fswb) {
+        return fromFsWorkbook(fswb);
+    }
+    toFsWorkbook(assay) {
+        return toFsWorkbook(assay);
+    }
+}
+
+export function XlsxHelper_AssayXlsx_$reflection() {
+    return class_type("ARCtrl.XlsxHelper.AssayXlsx", void 0, XlsxHelper_AssayXlsx);
+}
+
+export function XlsxHelper_AssayXlsx_$ctor() {
+    return new XlsxHelper_AssayXlsx();
+}
+
+export class XlsxHelper_StudyXlsx {
+    constructor() {
+    }
+    fromFsWorkbook(fswb) {
+        return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fswb);
+    }
+    toFsWorkbook(study, assays) {
+        return ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_353D0DB7(study, unwrap(map(ofSeq, assays)));
+    }
+}
+
+export function XlsxHelper_StudyXlsx_$reflection() {
+    return class_type("ARCtrl.XlsxHelper.StudyXlsx", void 0, XlsxHelper_StudyXlsx);
+}
+
+export function XlsxHelper_StudyXlsx_$ctor() {
+    return new XlsxHelper_StudyXlsx();
+}
+
+export class XlsxHelper_InvestigationXlsx {
+    constructor() {
+    }
+    fromFsWorkbook(fswb) {
+        return fromFsWorkbook_1(fswb);
+    }
+    toFsWorkbook(investigation) {
+        return toFsWorkbook_1(investigation);
+    }
+    toLightFsWorkbook(investigation) {
+        return toLightFsWorkbook(investigation);
+    }
+}
+
+export function XlsxHelper_InvestigationXlsx_$reflection() {
+    return class_type("ARCtrl.XlsxHelper.InvestigationXlsx", void 0, XlsxHelper_InvestigationXlsx);
+}
+
+export function XlsxHelper_InvestigationXlsx_$ctor() {
+    return new XlsxHelper_InvestigationXlsx();
+}
+
+export class XlsxController {
+    constructor() {
+    }
+    static get Assay() {
+        return new XlsxHelper_AssayXlsx();
+    }
+    static get Study() {
+        return new XlsxHelper_StudyXlsx();
+    }
+    static get Investigation() {
+        return new XlsxHelper_InvestigationXlsx();
+    }
+}
+
+export function XlsxController_$reflection() {
+    return class_type("ARCtrl.XlsxController", void 0, XlsxController);
+}
+

package/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js

@@ -1,11 +1,11 @@
-import { Union } from "../fable-library-js.4.13.0/Types.js";
-import { array_type, tuple_type, bool_type, class_type, union_type, obj_type, int32_type, string_type } from "../fable-library-js.4.13.0/Reflection.js";
-import { defaultArg } from "../fable-library-js.4.13.0/Option.js";
-import { empty } from "../fable-library-js.4.13.0/Seq.js";
-import { keyValueList } from "../fable-library-js.4.13.0/MapUtil.js";
-import { int32ToString } from "../fable-library-js.4.13.0/Util.js";
+import { Union } from "../fable-library-js.4.16.0/Types.js";
+import { array_type, tuple_type, bool_type, class_type, union_type, obj_type, int32_type, string_type } from "../fable-library-js.4.16.0/Reflection.js";
+import { defaultArg } from "../fable-library-js.4.16.0/Option.js";
+import { empty } from "../fable-library-js.4.16.0/Seq.js";
+import { keyValueList } from "../fable-library-js.4.16.0/MapUtil.js";
+import { int32ToString } from "../fable-library-js.4.16.0/Util.js";
 import { result } from "../Fable.Promise.2.2.2/Promise.fs.js";
-import { singleton } from "../fable-library-js.4.13.0/List.js";
+import { singleton } from "../fable-library-js.4.16.0/List.js";
 
 export class Types_HttpRequestHeaders extends Union {
     constructor(tag, fields) {

package/fable_modules/Fable.Promise.2.2.2/Promise.fs.js

@@ -1,6 +1,6 @@
-import { Result_MapError, Result_Map, FSharpResult$2 } from "../fable-library-js.4.13.0/Result.js";
-import { class_type } from "../fable-library-js.4.13.0/Reflection.js";
-import { defaultOf, equals, disposeSafe, getEnumerator } from "../fable-library-js.4.13.0/Util.js";
+import { Result_MapError, Result_Map, FSharpResult$2 } from "../fable-library-js.4.16.0/Result.js";
+import { class_type } from "../fable-library-js.4.16.0/Reflection.js";
+import { defaultOf, equals, disposeSafe, getEnumerator } from "../fable-library-js.4.16.0/Util.js";
 
 /**
  * Creates promise (in rejected state) with supplied reason.

package/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js

@@ -1,12 +1,12 @@
-import { fromContinuations } from "../fable-library-js.4.13.0/Async.js";
+import { fromContinuations } from "../fable-library-js.4.16.0/Async.js";
 import { HttpResponse, ResponseContent, HttpRequest, BodyContent, HttpMethod, Header } from "./Types.fs.js";
-import { tail, head, isEmpty, ofArray as ofArray_1, singleton, append, empty } from "../fable-library-js.4.13.0/List.js";
-import { ofArray, empty as empty_1 } from "../fable-library-js.4.13.0/Map.js";
-import { disposeSafe, getEnumerator, comparePrimitives } from "../fable-library-js.4.13.0/Util.js";
-import { join, split, isNullOrEmpty } from "../fable-library-js.4.13.0/String.js";
-import { choose } from "../fable-library-js.4.13.0/Array.js";
-import { some } from "../fable-library-js.4.13.0/Option.js";
-import { singleton as singleton_1 } from "../fable-library-js.4.13.0/AsyncBuilder.js";
+import { tail, head, isEmpty, ofArray as ofArray_1, singleton, append, empty } from "../fable-library-js.4.16.0/List.js";
+import { ofArray, empty as empty_1 } from "../fable-library-js.4.16.0/Map.js";
+import { disposeSafe, getEnumerator, comparePrimitives } from "../fable-library-js.4.16.0/Util.js";
+import { join, split, isNullOrEmpty } from "../fable-library-js.4.16.0/String.js";
+import { choose } from "../fable-library-js.4.16.0/Array.js";
+import { some } from "../fable-library-js.4.16.0/Option.js";
+import { singleton as singleton_1 } from "../fable-library-js.4.16.0/AsyncBuilder.js";
 
 /**
  * Download a Blob

package/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js

@@ -1,5 +1,5 @@
-import { Record, Union } from "../fable-library-js.4.13.0/Types.js";
-import { obj_type, record_type, int32_type, option_type, bool_type, list_type, class_type, string_type, union_type } from "../fable-library-js.4.13.0/Reflection.js";
+import { Record, Union } from "../fable-library-js.4.16.0/Types.js";
+import { obj_type, record_type, int32_type, option_type, bool_type, list_type, class_type, string_type, union_type } from "../fable-library-js.4.16.0/Reflection.js";
 
 export class HttpMethod extends Union {
     constructor(tag, fields) {

package/fable_modules/FsSpreadsheet.5.1.3/Cells/FsCell.fs.js

@@ -1,18 +1,18 @@
-import { toString, Union } from "../../fable-library-js.4.13.0/Types.js";
-import { class_type, union_type } from "../../fable-library-js.4.13.0/Reflection.js";
-import { map, defaultArg, unwrap } from "../../fable-library-js.4.13.0/Option.js";
+import { toString, Union } from "../../fable-library-js.4.16.0/Types.js";
+import { class_type, union_type } from "../../fable-library-js.4.16.0/Reflection.js";
+import { map, defaultArg, unwrap } from "../../fable-library-js.4.16.0/Option.js";
 import { FsAddress__get_FixedRow, FsAddress__get_FixedColumn, FsAddress__get_Address, FsAddress__Copy, CellReference_indexToColAdress, FsAddress__get_ColumnNumber, FsAddress__get_RowNumber, FsAddress_$ctor_Z37302880 } from "../FsAddress.fs.js";
-import { parse as parse_3 } from "../../fable-library-js.4.13.0/Decimal.js";
-import Decimal from "../../fable-library-js.4.13.0/Decimal.js";
-import { parse } from "../../fable-library-js.4.13.0/Double.js";
-import { parse as parse_1 } from "../../fable-library-js.4.13.0/Int32.js";
-import { toUInt64, toInt64 } from "../../fable-library-js.4.13.0/BigInt.js";
-import { parse as parse_2 } from "../../fable-library-js.4.13.0/Long.js";
-import { parse as parse_4 } from "../../fable-library-js.4.13.0/Date.js";
-import { parse as parse_5 } from "../../fable-library-js.4.13.0/Guid.js";
-import { parse as parse_6 } from "../../fable-library-js.4.13.0/Char.js";
-import { forAll } from "../../fable-library-js.4.13.0/Seq.js";
-import { equals } from "../../fable-library-js.4.13.0/Util.js";
+import { parse as parse_3 } from "../../fable-library-js.4.16.0/Decimal.js";
+import Decimal from "../../fable-library-js.4.16.0/Decimal.js";
+import { parse } from "../../fable-library-js.4.16.0/Double.js";
+import { parse as parse_1 } from "../../fable-library-js.4.16.0/Int32.js";
+import { toUInt64, toInt64 } from "../../fable-library-js.4.16.0/BigInt.js";
+import { parse as parse_2 } from "../../fable-library-js.4.16.0/Long.js";
+import { parse as parse_4 } from "../../fable-library-js.4.16.0/Date.js";
+import { parse as parse_5 } from "../../fable-library-js.4.16.0/Guid.js";
+import { parse as parse_6 } from "../../fable-library-js.4.16.0/Char.js";
+import { forAll } from "../../fable-library-js.4.16.0/Seq.js";
+import { equals } from "../../fable-library-js.4.16.0/Util.js";
 
 export class DataType extends Union {
     constructor(tag, fields) {

package/fable_modules/FsSpreadsheet.5.1.3/Cells/FsCellsCollection.fs.js

@@ -1,10 +1,10 @@
-import { addToSet, addToDict, getItemFromDict } from "../../fable-library-js.4.13.0/MapUtil.js";
-import { some } from "../../fable-library-js.4.13.0/Option.js";
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
-import { minBy, min, singleton, empty, delay, collect, max, isEmpty, iterate, map } from "../../fable-library-js.4.13.0/Seq.js";
+import { addToSet, addToDict, getItemFromDict } from "../../fable-library-js.4.16.0/MapUtil.js";
+import { some } from "../../fable-library-js.4.16.0/Option.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
+import { minBy, min, singleton, empty, delay, collect, max, isEmpty, iterate, map } from "../../fable-library-js.4.16.0/Seq.js";
 import { FsAddress_$ctor_Z37302880, FsAddress__get_ColumnNumber, FsAddress__get_RowNumber } from "../FsAddress.fs.js";
-import { comparePrimitives } from "../../fable-library-js.4.13.0/Util.js";
-import { rangeDouble } from "../../fable-library-js.4.13.0/Range.js";
+import { comparePrimitives } from "../../fable-library-js.4.16.0/Util.js";
+import { rangeDouble } from "../../fable-library-js.4.16.0/Range.js";
 
 export function Dictionary_tryGet(k, dict) {
     if (dict.has(k)) {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/CellBuilder.fs.js

@@ -1,9 +1,9 @@
-import { toString, Union } from "../../fable-library-js.4.13.0/Types.js";
-import { class_type, union_type, char_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { toString, Union } from "../../fable-library-js.4.16.0/Types.js";
+import { class_type, union_type, char_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { DataType } from "../Cells/FsCell.fs.js";
-import { head, tail, isEmpty, append, empty, map, reduce } from "../../fable-library-js.4.13.0/List.js";
+import { head, tail, isEmpty, append, empty, map, reduce } from "../../fable-library-js.4.16.0/List.js";
 import { SheetEntity$1__get_Messages, Message__MapText_11D407F6, SheetEntity$1 } from "./Types.fs.js";
-import { printf, toText } from "../../fable-library-js.4.13.0/String.js";
+import { printf, toText } from "../../fable-library-js.4.16.0/String.js";
 import { OptionalSource$1__get_Source, RequiredSource$1__get_Source, OptionalSource$1_$ctor_2B595, RequiredSource$1_$ctor_2B595 } from "./Expression.fs.js";
 
 export class ReduceOperation extends Union {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/ColumnBuilder.fs.js

@@ -1,7 +1,7 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { SheetEntity$1__get_Messages, SheetEntity$1, Message__MapText_11D407F6, SheetEntity$1_some_2B595 } from "./Types.fs.js";
-import { append, map, empty } from "../../fable-library-js.4.13.0/List.js";
-import { printf, toText } from "../../fable-library-js.4.13.0/String.js";
+import { append, map, empty } from "../../fable-library-js.4.16.0/List.js";
+import { printf, toText } from "../../fable-library-js.4.16.0/String.js";
 import { OptionalSource$1__get_Source, RequiredSource$1__get_Source, OptionalSource$1_$ctor_2B595, RequiredSource$1_$ctor_2B595 } from "./Expression.fs.js";
 
 export class ColumnBuilder {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/DSL.fs.js

@@ -1,6 +1,6 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { SheetEntity$1 } from "./Types.fs.js";
-import { singleton } from "../../fable-library-js.4.13.0/List.js";
+import { singleton } from "../../fable-library-js.4.16.0/List.js";
 
 export class DSL {
     constructor() {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/Expression.fs.js

@@ -1,4 +1,4 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 
 export class OptionalSource$1 {
     constructor(s) {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/RowBuilder.fs.js

@@ -1,7 +1,7 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { SheetEntity$1__get_Messages, SheetEntity$1, Message__MapText_11D407F6, SheetEntity$1_some_2B595 } from "./Types.fs.js";
-import { append, map, empty } from "../../fable-library-js.4.13.0/List.js";
-import { printf, toText } from "../../fable-library-js.4.13.0/String.js";
+import { append, map, empty } from "../../fable-library-js.4.16.0/List.js";
+import { printf, toText } from "../../fable-library-js.4.16.0/String.js";
 import { OptionalSource$1__get_Source, RequiredSource$1__get_Source, OptionalSource$1_$ctor_2B595, RequiredSource$1_$ctor_2B595 } from "./Expression.fs.js";
 
 export class RowBuilder {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/SheetBuilder.fs.js

@@ -1,7 +1,7 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { SheetEntity$1__get_Messages, SheetEntity$1, Message__MapText_11D407F6, SheetEntity$1_some_2B595 } from "./Types.fs.js";
-import { append, map, empty } from "../../fable-library-js.4.13.0/List.js";
-import { printf, toText } from "../../fable-library-js.4.13.0/String.js";
+import { append, map, empty } from "../../fable-library-js.4.16.0/List.js";
+import { printf, toText } from "../../fable-library-js.4.16.0/String.js";
 
 export class SheetBuilder {
     constructor(name) {

package/fable_modules/FsSpreadsheet.5.1.3/DSL/TableBuilder.fs.js

@@ -1,7 +1,7 @@
-import { class_type } from "../../fable-library-js.4.13.0/Reflection.js";
+import { class_type } from "../../fable-library-js.4.16.0/Reflection.js";
 import { SheetEntity$1__get_Messages, SheetEntity$1, Message__MapText_11D407F6, SheetEntity$1_some_2B595 } from "./Types.fs.js";
-import { append, map, empty } from "../../fable-library-js.4.13.0/List.js";
-import { printf, toText } from "../../fable-library-js.4.13.0/String.js";
+import { append, map, empty } from "../../fable-library-js.4.16.0/List.js";
+import { printf, toText } from "../../fable-library-js.4.16.0/String.js";
 
 export class TableBuilder {
     constructor(name) {