@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.2

package/ISA/ISA.Json/Data.js

@@ -1,253 +0,0 @@
-import { ErrorReason$1, Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { list as list_2, string } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library-js.4.13.0/Result.js";
-import { DataFile } from "../ISA/JsonTypes/DataFile.js";
-import { printf, toText, replace } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { ConverterOptions__set_IncludeContext_Z1FBCCD16, ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeContext, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
-import { tryIncludeList, tryInclude } from "./GEncode.js";
-import { list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
-import { decoder as decoder_1, encoder } from "./Comment.js";
-import { context_jsonvalue } from "./context/rocrate/isa_data_context.js";
-import { uri, object } from "./Decode.js";
-import { Data } from "../ISA/JsonTypes/Data.js";
-import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-import { MaterialAttributeValue_decoder, MaterialAttributeValue_encoder } from "./Material.js";
-import { context_jsonvalue as context_jsonvalue_1 } from "./context/rocrate/isa_source_context.js";
-import { Source } from "../ISA/JsonTypes/Source.js";
-import { FactorValue_decoder, FactorValue_encoder } from "./Factor.js";
-import { context_jsonvalue as context_jsonvalue_2 } from "./context/rocrate/isa_sample_context.js";
-import { Sample } from "../ISA/JsonTypes/Sample.js";
-
-export function DataFile_encoder(options, value) {
-    switch (value.tag) {
-        case 1:
-            return new Json(0, ["Derived Data File"]);
-        case 2:
-            return new Json(0, ["Image File"]);
-        default:
-            return new Json(0, ["Raw Data File"]);
-    }
-}
-
-export function DataFile_decoder(options) {
-    return {
-        Decode(s, json) {
-            const matchValue = string.Decode(s, json);
-            if (matchValue.tag === 1) {
-                return new FSharpResult$2(1, [matchValue.fields[0]]);
-            }
-            else {
-                switch (matchValue.fields[0]) {
-                    case "Raw Data File":
-                        return new FSharpResult$2(0, [new DataFile(0, [])]);
-                    case "Derived Data File":
-                        return new FSharpResult$2(0, [new DataFile(1, [])]);
-                    case "Image File":
-                        return new FSharpResult$2(0, [new DataFile(2, [])]);
-                    default: {
-                        const s_1 = matchValue.fields[0];
-                        return new FSharpResult$2(1, [[`Could not parse ${s_1}.`, new ErrorReason$1(0, [s_1, json])]]);
-                    }
-                }
-            }
-        },
-    };
-}
-
-export function Data_genID(d) {
-    const matchValue = d.ID;
-    if (matchValue == null) {
-        const matchValue_1 = d.Name;
-        if (matchValue_1 == null) {
-            return "#EmptyData";
-        }
-        else {
-            return replace(matchValue_1, " ", "_");
-        }
-    }
-    else {
-        return URIModule_toString(matchValue);
-    }
-}
-
-export function Data_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [Data_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_1(ofArray([new Json(0, ["Data"]), new Json(0, ["ArcData"])]))]) : empty(), delay(() => append(singleton(tryInclude("name", (value_5) => (new Json(0, [value_5])), oa.Name)), delay(() => append(singleton(tryInclude("type", (value_7) => DataFile_encoder(options, value_7), oa.DataType)), delay(() => append(singleton(tryIncludeList("comments", (comment) => encoder(options, comment), oa.Comments)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue]) : empty()))))))))))))))]);
-}
-
-export const Data_allowedFields = ofArray(["@id", "name", "type", "comments", "@type", "@context"]);
-
-export function Data_decoder(options) {
-    return object(Data_allowedFields, (get$) => {
-        let objectArg, objectArg_1, arg_5, objectArg_2, arg_7, objectArg_3;
-        return new Data((objectArg = get$.Optional, objectArg.Field("@id", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (arg_5 = DataFile_decoder(options), (objectArg_2 = get$.Optional, objectArg_2.Field("type", arg_5))), (arg_7 = list_2(decoder_1(options)), (objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
-    });
-}
-
-export function Data_fromJsonString(s) {
-    const matchValue = fromString(Data_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Data_toJsonString(m) {
-    return toString(2, Data_encoder(ConverterOptions_$ctor(), m));
-}
-
-/**
- * exports in json-ld format
- */
-export function Data_toJsonldString(d) {
-    let returnVal;
-    return toString(2, Data_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), d));
-}
-
-export function Data_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, Data_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-
-export function Source_genID(s) {
-    const matchValue = s.ID;
-    if (matchValue == null) {
-        const matchValue_1 = s.Name;
-        if (matchValue_1 == null) {
-            return "#EmptySource";
-        }
-        else {
-            return "#Source_" + replace(matchValue_1, " ", "_");
-        }
-    }
-    else {
-        return URIModule_toString(matchValue);
-    }
-}
-
-export function Source_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [Source_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_1(ofArray([new Json(0, ["Source"]), new Json(0, ["ArcSource"])]))]) : empty(), delay(() => append(singleton(tryInclude("name", (value_5) => (new Json(0, [value_5])), oa.Name)), delay(() => append(singleton(tryIncludeList("characteristics", (oa_1) => MaterialAttributeValue_encoder(options, oa_1), oa.Characteristics)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue_1]) : empty()))))))))))))]);
-}
-
-export const Source_allowedFields = ofArray(["@id", "name", "characteristics", "@type", "@context"]);
-
-export function Source_decoder(options) {
-    return object(Source_allowedFields, (get$) => {
-        let objectArg, objectArg_1, arg_5, objectArg_2;
-        return new Source((objectArg = get$.Optional, objectArg.Field("@id", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (arg_5 = list_2(MaterialAttributeValue_decoder(options)), (objectArg_2 = get$.Optional, objectArg_2.Field("characteristics", arg_5))));
-    });
-}
-
-export function Source_fromJsonString(s) {
-    const matchValue = fromString(Source_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Source_toJsonString(m) {
-    return toString(2, Source_encoder(ConverterOptions_$ctor(), m));
-}
-
-/**
- * exports in json-ld format
- */
-export function Source_toJsonldString(s) {
-    let returnVal;
-    return toString(2, Source_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), s));
-}
-
-export function Source_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, Source_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-
-export function Sample_genID(s) {
-    const matchValue = s.ID;
-    if (matchValue == null) {
-        const matchValue_1 = s.Name;
-        if (matchValue_1 == null) {
-            return "#EmptySample";
-        }
-        else {
-            return "#Sample_" + replace(matchValue_1, " ", "_");
-        }
-    }
-    else {
-        return matchValue;
-    }
-}
-
-export function Sample_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [Sample_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_1(ofArray([new Json(0, ["Sample"]), new Json(0, ["ArcSample"])]))]) : empty(), delay(() => append(singleton(tryInclude("name", (value_5) => (new Json(0, [value_5])), oa.Name)), delay(() => append(singleton(tryIncludeList("characteristics", (oa_1) => MaterialAttributeValue_encoder(options, oa_1), oa.Characteristics)), delay(() => append(singleton(tryIncludeList("factorValues", (oa_2) => FactorValue_encoder(options, oa_2), oa.FactorValues)), delay(() => append(singleton(tryIncludeList("derivesFrom", (oa_3) => Source_encoder(options, oa_3), oa.DerivesFrom)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue_2]) : empty()))))))))))))))))]);
-}
-
-export const Sample_allowedFields = ofArray(["@id", "name", "characteristics", "factorValues", "derivesFrom", "@type", "@context"]);
-
-export function Sample_decoder(options) {
-    return object(Sample_allowedFields, (get$) => {
-        let objectArg, objectArg_1, arg_5, objectArg_2, arg_7, objectArg_3, arg_9, objectArg_4;
-        return new Sample((objectArg = get$.Optional, objectArg.Field("@id", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (arg_5 = list_2(MaterialAttributeValue_decoder(options)), (objectArg_2 = get$.Optional, objectArg_2.Field("characteristics", arg_5))), (arg_7 = list_2(FactorValue_decoder(options)), (objectArg_3 = get$.Optional, objectArg_3.Field("factorValues", arg_7))), (arg_9 = list_2(Source_decoder(options)), (objectArg_4 = get$.Optional, objectArg_4.Field("derivesFrom", arg_9))));
-    });
-}
-
-export function Sample_fromJsonString(s) {
-    const matchValue = fromString(Sample_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Sample_toJsonString(m) {
-    return toString(2, Sample_encoder(ConverterOptions_$ctor(), m));
-}
-
-/**
- * exports in json-ld format
- */
-export function Sample_toJsonldString(s) {
-    let returnVal;
-    return toString(2, Sample_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), s));
-}
-
-export function Sample_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, Sample_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-

package/ISA/ISA.Json/Decode.js

@@ -1,61 +0,0 @@
-import { helpers as helpers_2 } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { Getters$2__get_Errors, Getters$2_$ctor_Z4BE6C149, string } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library-js.4.13.0/Result.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { ErrorReason$1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { exists } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { ofSeq, contains } from "../../fable_modules/fable-library-js.4.13.0/Set.js";
-import { comparePrimitives } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { head, length, isEmpty } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-
-export const helpers = helpers_2;
-
-export function isURI(s) {
-    return true;
-}
-
-export const uri = {
-    Decode(s, json) {
-        const matchValue = string.Decode(s, json);
-        if (matchValue.tag === 1) {
-            return new FSharpResult$2(1, [matchValue.fields[0]]);
-        }
-        else if (isURI(matchValue.fields[0])) {
-            return new FSharpResult$2(0, [matchValue.fields[0]]);
-        }
-        else {
-            const s_3 = matchValue.fields[0];
-            return new FSharpResult$2(1, [[s_3, new ErrorReason$1(6, [toText(printf("Expected URI, got %s"))(s_3)])]]);
-        }
-    },
-};
-
-export function hasUnknownFields(helpers_1, knownFields, json) {
-    return exists((x) => !contains(x, knownFields), helpers_1.getProperties(json));
-}
-
-export function object(allowedFields, builder) {
-    const allowedFields_1 = ofSeq(allowedFields, {
-        Compare: comparePrimitives,
-    });
-    return {
-        Decode(helpers_1, value) {
-            const getters = Getters$2_$ctor_Z4BE6C149(helpers_1, value);
-            if (hasUnknownFields(helpers_1, allowedFields_1, value)) {
-                return new FSharpResult$2(1, [["Unknown fields in object", new ErrorReason$1(0, ["", value])]]);
-            }
-            else {
-                const result = builder(getters);
-                const matchValue = Getters$2__get_Errors(getters);
-                if (!isEmpty(matchValue)) {
-                    const errors = matchValue;
-                    return (length(errors) > 1) ? (new FSharpResult$2(1, [["", new ErrorReason$1(7, [errors])]])) : (new FSharpResult$2(1, [head(matchValue)]));
-                }
-                else {
-                    return new FSharpResult$2(0, [result]);
-                }
-            }
-        },
-    };
-}
-

package/ISA/ISA.Json/Factor.js

@@ -1,194 +0,0 @@
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
-import { array, object, string, float, int } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library-js.4.13.0/Result.js";
-import { Value } from "../ISA/JsonTypes/Value.js";
-import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { ConverterOptions__set_IncludeContext_Z1FBCCD16, ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions__get_IncludeContext, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID, ConverterOptions_$ctor } from "./ConverterOptions.js";
-import { replace, printf, toText } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { tryIncludeArray, tryInclude } from "./GEncode.js";
-import { list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
-import { decoder as decoder_1, encoder } from "./Comment.js";
-import { context_jsonvalue } from "./context/rocrate/isa_factor_context.js";
-import { uri } from "./Decode.js";
-import { Factor } from "../ISA/JsonTypes/Factor.js";
-import { context_jsonvalue as context_jsonvalue_1 } from "./context/rocrate/isa_factor_value_context.js";
-import { FactorValue } from "../ISA/JsonTypes/FactorValue.js";
-
-export function Value_encoder(options, value) {
-    switch (value.tag) {
-        case 1:
-            return new Json(7, [value.fields[0] >>> 0]);
-        case 3:
-            return new Json(0, [value.fields[0]]);
-        case 0:
-            return OntologyAnnotation_encoder(options, value.fields[0]);
-        default:
-            return new Json(2, [value.fields[0]]);
-    }
-}
-
-export function Value_decoder(options) {
-    return {
-        Decode(s, json) {
-            const matchValue = int.Decode(s, json);
-            if (matchValue.tag === 1) {
-                const matchValue_1 = float.Decode(s, json);
-                if (matchValue_1.tag === 1) {
-                    const matchValue_2 = OntologyAnnotation_decoder(options).Decode(s, json);
-                    if (matchValue_2.tag === 1) {
-                        const matchValue_3 = string.Decode(s, json);
-                        return (matchValue_3.tag === 1) ? (new FSharpResult$2(1, [matchValue_3.fields[0]])) : (new FSharpResult$2(0, [new Value(3, [matchValue_3.fields[0]])]));
-                    }
-                    else {
-                        return new FSharpResult$2(0, [new Value(0, [matchValue_2.fields[0]])]);
-                    }
-                }
-                else {
-                    return new FSharpResult$2(0, [new Value(2, [matchValue_1.fields[0]])]);
-                }
-            }
-            else {
-                return new FSharpResult$2(0, [new Value(1, [matchValue.fields[0]])]);
-            }
-        },
-    };
-}
-
-export function Value_fromJsonString(s) {
-    const matchValue = fromString(Value_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Value_toJsonString(v) {
-    return toString(2, Value_encoder(ConverterOptions_$ctor(), v));
-}
-
-export function Factor_genID(f) {
-    const matchValue = f.ID;
-    if (matchValue == null) {
-        const matchValue_1 = f.Name;
-        if (matchValue_1 == null) {
-            return "#EmptyFactor";
-        }
-        else {
-            return "#Factor_" + replace(matchValue_1, " ", "_");
-        }
-    }
-    else {
-        return URIModule_toString(matchValue);
-    }
-}
-
-export function Factor_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [Factor_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_1(ofArray([new Json(0, ["Factor"]), new Json(0, ["ArcFactor"])]))]) : empty(), delay(() => append(singleton(tryInclude("factorName", (value_5) => (new Json(0, [value_5])), oa.Name)), delay(() => append(singleton(tryInclude("factorType", (oa_1) => OntologyAnnotation_encoder(options, oa_1), oa.FactorType)), delay(() => append(singleton(tryIncludeArray("comments", (comment) => encoder(options, comment), oa.Comments)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue]) : empty()))))))))))))))]);
-}
-
-export function Factor_decoder(options) {
-    return object((get$) => {
-        let objectArg, objectArg_1, arg_5, objectArg_2, arg_7, objectArg_3;
-        return new Factor((objectArg = get$.Optional, objectArg.Field("@id", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("factorName", string)), (arg_5 = OntologyAnnotation_decoder(options), (objectArg_2 = get$.Optional, objectArg_2.Field("factorType", arg_5))), (arg_7 = array(decoder_1(options)), (objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
-    });
-}
-
-export function Factor_fromJsonString(s) {
-    const matchValue = fromString(Factor_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function Factor_toJsonString(f) {
-    return toString(2, Factor_encoder(ConverterOptions_$ctor(), f));
-}
-
-/**
- * exports in json-ld format
- */
-export function Factor_toJsonldString(f) {
-    let returnVal;
-    return toString(2, Factor_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), f));
-}
-
-export function Factor_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, Factor_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-
-export function FactorValue_genID(fv) {
-    const matchValue = fv.ID;
-    if (matchValue == null) {
-        return "#EmptyFactorValue";
-    }
-    else {
-        return URIModule_toString(matchValue);
-    }
-}
-
-export function FactorValue_encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [FactorValue_genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", list_1(ofArray([new Json(0, ["FactorValue"]), new Json(0, ["ArcFactorValue"])]))]) : empty(), delay(() => append(singleton(tryInclude("category", (oa_1) => Factor_encoder(options, oa_1), oa.Category)), delay(() => append(singleton(tryInclude("value", (value_5) => Value_encoder(options, value_5), oa.Value)), delay(() => append(singleton(tryInclude("unit", (oa_2) => OntologyAnnotation_encoder(options, oa_2), oa.Unit)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue_1]) : empty()))))))))))))))]);
-}
-
-export function FactorValue_decoder(options) {
-    return object((get$) => {
-        let objectArg, arg_3, objectArg_1, arg_5, objectArg_2, arg_7, objectArg_3;
-        return new FactorValue((objectArg = get$.Optional, objectArg.Field("@id", uri)), (arg_3 = Factor_decoder(options), (objectArg_1 = get$.Optional, objectArg_1.Field("category", arg_3))), (arg_5 = Value_decoder(options), (objectArg_2 = get$.Optional, objectArg_2.Field("value", arg_5))), (arg_7 = OntologyAnnotation_decoder(options), (objectArg_3 = get$.Optional, objectArg_3.Field("unit", arg_7))));
-    });
-}
-
-export function FactorValue_fromJsonString(s) {
-    const matchValue = fromString(FactorValue_decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function FactorValue_toJsonString(f) {
-    return toString(2, FactorValue_encoder(ConverterOptions_$ctor(), f));
-}
-
-/**
- * exports in json-ld format
- */
-export function FactorValue_toJsonldString(f) {
-    let returnVal;
-    return toString(2, FactorValue_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), f));
-}
-
-export function FactorValue_toJsonldStringWithContext(a) {
-    let returnVal;
-    return toString(2, FactorValue_encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), a));
-}
-

package/ISA/ISA.Json/GEncode.js

@@ -1,40 +0,0 @@
-import { value as value_1 } from "../../fable_modules/fable-library-js.4.13.0/Option.js";
-import { isIterable } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { list as list_1, seq } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
-import { map } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { map as map_1 } from "../../fable_modules/fable-library-js.4.13.0/Array.js";
-import { map as map_2 } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-
-/**
- * Try to encode the given object using the given encoder, or return Encode.nil if the object is null
- * 
- * If the object is a sequence, encode each element using the given encoder and return the resulting sequence
- */
-export function tryIncludeObj(name, encoder, value) {
-    let v, o;
-    return [name, (value != null) ? (isIterable(value_1(value)) ? ((v = value_1(value), seq(map(encoder, v)))) : ((o = value_1(value), encoder(o)))) : (new Json(3, []))];
-}
-
-/**
- * Try to encode the given object using the given encoder, or return Encode.nil if the object is null
- */
-export function tryInclude(name, encoder, value) {
-    return [name, (value != null) ? encoder(value_1(value)) : (new Json(3, []))];
-}
-
-/**
- * Try to encode the given object using the given encoder, or return Encode.nil if the object is null
- */
-export function tryIncludeSeq(name, encoder, value) {
-    return [name, (value != null) ? seq(map(encoder, value_1(value))) : (new Json(3, []))];
-}
-
-export function tryIncludeArray(name, encoder, value) {
-    return [name, (value != null) ? (new Json(6, [map_1(encoder, value)])) : (new Json(3, []))];
-}
-
-export function tryIncludeList(name, encoder, value) {
-    return [name, (value != null) ? list_1(map_2(encoder, value)) : (new Json(3, []))];
-}
-

package/ISA/ISA.Json/Investigation.js

@@ -1,89 +0,0 @@
-import { empty as empty_1, ofArray, choose } from "../../fable_modules/fable-library-js.4.13.0/List.js";
-import { equals } from "../../fable_modules/fable-library-js.4.13.0/Util.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library-js.4.13.0/Seq.js";
-import { ConverterOptions__set_IsRoCrate_Z1FBCCD16, ConverterOptions__set_IncludeContext_Z1FBCCD16, ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeContext, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
-import { tryIncludeList, tryInclude } from "./GEncode.js";
-import { OntologySourceReference_decoder, OntologySourceReference_encoder } from "./Ontology.js";
-import { decoder as decoder_2, encoder as encoder_1 } from "./Publication.js";
-import { decoder as decoder_3, encoder as encoder_2 } from "./Person.js";
-import { Study_decoder, Study_encoder } from "./Study.js";
-import { decoder as decoder_4, encoder as encoder_3 } from "./Comment.js";
-import { context_jsonvalue } from "./context/rocrate/isa_investigation_context.js";
-import { context_jsonvalue as context_jsonvalue_1, conformsTo_jsonvalue } from "./context/rocrate/rocrate_context.js";
-import { object } from "./Decode.js";
-import { list as list_1, string } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
-import { Investigation } from "../ISA/JsonTypes/Investigation.js";
-import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { printf, toText } from "../../fable_modules/fable-library-js.4.13.0/String.js";
-import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
-
-export function genID(i) {
-    return "./";
-}
-
-export function encoder(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(ConverterOptions__get_SetID(options) ? singleton(["@id", new Json(0, [genID(oa)])]) : singleton(tryInclude("@id", (value_1) => (new Json(0, [value_1])), oa.ID)), delay(() => append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", new Json(0, ["Investigation"])]) : empty(), delay(() => append(singleton(tryInclude("filename", (value_4) => (new Json(0, [value_4])), oa.FileName)), delay(() => append(singleton(tryInclude("identifier", (value_6) => (new Json(0, [value_6])), oa.Identifier)), delay(() => append(singleton(tryInclude("title", (value_8) => (new Json(0, [value_8])), oa.Title)), delay(() => append(singleton(tryInclude("description", (value_10) => (new Json(0, [value_10])), oa.Description)), delay(() => append(singleton(tryInclude("submissionDate", (value_12) => (new Json(0, [value_12])), oa.SubmissionDate)), delay(() => append(singleton(tryInclude("publicReleaseDate", (value_14) => (new Json(0, [value_14])), oa.PublicReleaseDate)), delay(() => append(singleton(tryIncludeList("ontologySourceReferences", (osr) => OntologySourceReference_encoder(options, osr), oa.OntologySourceReferences)), delay(() => append(singleton(tryIncludeList("publications", (oa_1) => encoder_1(options, oa_1), oa.Publications)), delay(() => append(singleton(tryIncludeList("people", (oa_2) => encoder_2(options, oa_2), oa.Contacts)), delay(() => append(singleton(tryIncludeList("studies", (oa_3) => Study_encoder(options, oa_3), oa.Studies)), delay(() => append(singleton(tryIncludeList("comments", (comment) => encoder_3(options, comment), oa.Comments)), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue]) : empty()))))))))))))))))))))))))))))))]);
-}
-
-export function encodeRoCrate(options, oa) {
-    return new Json(5, [choose((tupledArg) => {
-        const v = tupledArg[1];
-        if (equals(v, new Json(3, []))) {
-            return void 0;
-        }
-        else {
-            return [tupledArg[0], v];
-        }
-    }, toList(delay(() => append(singleton(tryInclude("@type", (value) => (new Json(0, [value])), "CreativeWork")), delay(() => append(singleton(tryInclude("@id", (value_2) => (new Json(0, [value_2])), "ro-crate-metadata.json")), delay(() => append(singleton(tryInclude("about", (oa_1) => encoder(options, oa_1), oa)), delay(() => append(singleton(["conformsTo", conformsTo_jsonvalue]), delay(() => (ConverterOptions__get_IncludeContext(options) ? singleton(["@context", context_jsonvalue_1]) : empty()))))))))))))]);
-}
-
-export const allowedFields = ofArray(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "ontologySourceReferences", "publications", "people", "studies", "comments", "@type", "@context"]);
-
-export function decoder(options) {
-    return object(allowedFields, (get$) => {
-        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
-        return new Investigation((objectArg = get$.Optional, objectArg.Field("@id", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("filename", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("identifier", string)), (objectArg_3 = get$.Optional, objectArg_3.Field("title", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("description", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string)), (arg_15 = list_1(OntologySourceReference_decoder(options)), (objectArg_7 = get$.Optional, objectArg_7.Field("ontologySourceReferences", arg_15))), (arg_17 = list_1(decoder_2(options)), (objectArg_8 = get$.Optional, objectArg_8.Field("publications", arg_17))), (arg_19 = list_1(decoder_3(options)), (objectArg_9 = get$.Optional, objectArg_9.Field("people", arg_19))), (arg_21 = list_1(Study_decoder(options)), (objectArg_10 = get$.Optional, objectArg_10.Field("studies", arg_21))), (arg_23 = list_1(decoder_4(options)), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_23))), empty_1());
-    });
-}
-
-export function fromJsonString(s) {
-    const matchValue = fromString(decoder(ConverterOptions_$ctor()), s);
-    if (matchValue.tag === 1) {
-        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function toJsonString(p) {
-    return toString(2, encoder(ConverterOptions_$ctor(), p));
-}
-
-/**
- * exports in json-ld format
- */
-export function toJsonldString(i) {
-    let returnVal;
-    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), i));
-}
-
-export function toJsonldStringWithContext(i) {
-    let returnVal;
-    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), (((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), returnVal)), i));
-}
-
-export function toRoCrateString(i) {
-    let returnVal;
-    return toString(2, encodeRoCrate((returnVal = ConverterOptions_$ctor(), ((((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IncludeContext_Z1FBCCD16(returnVal, true)), ConverterOptions__set_IsRoCrate_Z1FBCCD16(returnVal, true)), returnVal)), i));
-}
-