@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.2

package/Json/context/rocrate/isa_assay_context.js

@@ -0,0 +1,32 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Assay, ArcAssay, measurementType, technologyType, technologyPlatform, dataFiles, materials, otherMaterials, samples, characteristicCategories, processSequences, unitCategories, comments, filename) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Assay = Assay;
+        this.ArcAssay = ArcAssay;
+        this.measurementType = measurementType;
+        this.technologyType = technologyType;
+        this.technologyPlatform = technologyPlatform;
+        this.dataFiles = dataFiles;
+        this.materials = materials;
+        this.otherMaterials = otherMaterials;
+        this.samples = samples;
+        this.characteristicCategories = characteristicCategories;
+        this.processSequences = processSequences;
+        this.unitCategories = unitCategories;
+        this.comments = comments;
+        this.filename = filename;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Assay.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Assay", string_type], ["ArcAssay", string_type], ["measurementType", string_type], ["technologyType", string_type], ["technologyPlatform", string_type], ["dataFiles", string_type], ["materials", string_type], ["otherMaterials", string_type], ["samples", string_type], ["characteristicCategories", string_type], ["processSequences", string_type], ["unitCategories", string_type], ["comments", string_type], ["filename", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Assay", new Json(0, ["sdo:Dataset"])], ["identifier", new Json(0, ["sdo:identifier"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["measurementType", new Json(0, ["sdo:variableMeasured"])], ["technologyType", new Json(0, ["sdo:measurementTechnique"])], ["technologyPlatform", new Json(0, ["sdo:measurementMethod"])], ["dataFiles", new Json(0, ["sdo:hasPart"])], ["performers", new Json(0, ["sdo:creator"])], ["processSequences", new Json(0, ["sdo:about"])], ["comments", new Json(0, ["sdo:comment"])], ["filename", new Json(0, ["sdo:url"])]]]);
+

package/Json/context/rocrate/isa_comment_context.js

@@ -0,0 +1,23 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Comment$, name, value) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Comment = Comment$;
+        this.name = name;
+        this.value = value;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Comment.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Comment", string_type], ["name", string_type], ["value", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Comment", new Json(0, ["sdo:Comment"])], ["name", new Json(0, ["sdo:name"])], ["value", new Json(0, ["sdo:text"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \r\n    \"Comment\": \"sdo:Comment\",\r\n    \"name\": \"sdo:name\",\r\n    \"value\": \"sdo:text\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_component_context.js

@@ -0,0 +1,24 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Component, ArcComponent, componentName, componentType) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Component = Component;
+        this.ArcComponent = ArcComponent;
+        this.componentName = componentName;
+        this.componentType = componentType;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Component.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Component", string_type], ["ArcComponent", string_type], ["componentName", string_type], ["componentType", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Component", new Json(0, ["sdo:PropertyValue"])], ["category", new Json(0, ["sdo:name"])], ["categoryCode", new Json(0, ["sdo:propertyID"])], ["value", new Json(0, ["sdo:value"])], ["valueCode", new Json(0, ["sdo:valueReference"])], ["unit", new Json(0, ["sdo:unitText"])], ["unitCode", new Json(0, ["sdo:unitCode"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \r\n    \"Component\": \"sdo:PropertyValue\",\r\n\r\n    \"componentName\": \"sdo\",\r\n    \"componentType\": \"arc:ARC#ARC_00000102\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_data_context.js

@@ -0,0 +1,25 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Data, ArcData, type, name, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Data = Data;
+        this.ArcData = ArcData;
+        this.type = type;
+        this.name = name;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Data.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Data", string_type], ["ArcData", string_type], ["type", string_type], ["name", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Data", new Json(0, ["sdo:MediaObject"])], ["type", new Json(0, ["sdo:disambiguatingDescription"])], ["name", new Json(0, ["sdo:name"])], ["comments", new Json(0, ["sdo:comment"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Data\": \"sdo:MediaObject\",\r\n    \"ArcData\": \"arc:ARC#ARC_00000076\",\r\n\r\n    \"type\": \"arc:ARC#ARC_00000107\",\r\n\r\n    \"name\": \"sdo:name\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_factor_context.js

@@ -0,0 +1,25 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Factor, ArcFactor, factorName, factorType, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Factor = Factor;
+        this.ArcFactor = ArcFactor;
+        this.factorName = factorName;
+        this.factorType = factorType;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Factor.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Factor", string_type], ["ArcFactor", string_type], ["factorName", string_type], ["factorType", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Factor", new Json(0, ["sdo:DefinedTerm"])], ["factorName", new Json(0, ["sdo:name"])], ["annotationValue", new Json(0, ["sdo:name"])], ["termSource", new Json(0, ["sdo:inDefinedTermSet"])], ["termAccession", new Json(0, ["sdo:termCode"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Factor\": \"sdo:Thing\",\r\n    \"ArcFactor\": \"arc:ARC#ARC_00000044\",\r\n\r\n    \"factorName\": \"arc:ARC#ARC_00000019\",\r\n    \"factorType\": \"arc:ARC#ARC_00000078\",\r\n\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_factor_value_context.js

@@ -0,0 +1,23 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, FactorValue, ArcFactorValue, category, value, unit) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.FactorValue = FactorValue;
+        this.ArcFactorValue = ArcFactorValue;
+        this.category = category;
+        this.value = value;
+        this.unit = unit;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.FactorValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["FactorValue", string_type], ["ArcFactorValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["FactorValue", new Json(0, ["sdo:PropertyValue"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["category", new Json(0, ["sdo:name"])], ["categoryName", new Json(0, ["sdo:alternateName"])], ["categoryCode", new Json(0, ["sdo:propertyID"])], ["value", new Json(0, ["sdo:value"])], ["valueCode", new Json(0, ["sdo:valueReference"])], ["unit", new Json(0, ["sdo:unitText"])], ["unitCode", new Json(0, ["sdo:unitCode"])]]]);
+

package/{ISA/ISA.Json → Json}/context/rocrate/isa_investigation_context.js

@@ -1,6 +1,6 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 
 export class IContext extends Record {
     constructor(sdo, arc, Investigation, identifier, title, description, submissionDate, publicReleaseDate, publications, people, studies, ontologySourceReferences, comments, publications$003F, filename) {
@@ -24,10 +24,10 @@ export class IContext extends Record {
 }
 
 export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.Investigation.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Investigation", string_type], ["identifier", string_type], ["title", string_type], ["description", string_type], ["submissionDate", string_type], ["publicReleaseDate", string_type], ["publications", string_type], ["people", string_type], ["studies", string_type], ["ontologySourceReferences", string_type], ["comments", string_type], ["publications?", string_type], ["filename", string_type]]);
+    return record_type("ARCtrl.Json.ROCrateContext.Investigation.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Investigation", string_type], ["identifier", string_type], ["title", string_type], ["description", string_type], ["submissionDate", string_type], ["publicReleaseDate", string_type], ["publications", string_type], ["people", string_type], ["studies", string_type], ["ontologySourceReferences", string_type], ["comments", string_type], ["publications?", string_type], ["filename", string_type]]);
 }
 
-export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["Investigation", new Json(0, ["sdo:Dataset"])], ["identifier", new Json(0, ["sdo:identifier"])], ["title", new Json(0, ["sdo:headline"])], ["description", new Json(0, ["sdo:description"])], ["submissionDate", new Json(0, ["sdo:dateCreated"])], ["publicReleaseDate", new Json(0, ["sdo:datePublished"])], ["publications", new Json(0, ["sdo:citation"])], ["people", new Json(0, ["sdo:creator"])], ["studies", new Json(0, ["sdo:hasPart"])], ["ontologySourceReferences", new Json(0, ["sdo:mentions"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])], ["publications?", new Json(0, ["sdo:subjectOf?"])], ["filename", new Json(0, ["sdo:alternateName"])]]]);
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Investigation", new Json(0, ["sdo:Dataset"])], ["identifier", new Json(0, ["sdo:identifier"])], ["title", new Json(0, ["sdo:headline"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["description", new Json(0, ["sdo:description"])], ["submissionDate", new Json(0, ["sdo:dateCreated"])], ["publicReleaseDate", new Json(0, ["sdo:datePublished"])], ["publications", new Json(0, ["sdo:citation"])], ["people", new Json(0, ["sdo:creator"])], ["studies", new Json(0, ["sdo:hasPart"])], ["ontologySourceReferences", new Json(0, ["sdo:mentions"])], ["comments", new Json(0, ["sdo:comment"])], ["filename", new Json(0, ["sdo:alternateName"])]]]);
 
 export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Investigation\": \"sdo:Dataset\",\r\n\r\n    \"identifier\" : \"sdo:identifier\",\r\n    \"title\": \"sdo:headline\",\r\n    \"description\": \"sdo:description\",\r\n    \"submissionDate\": \"sdo:dateCreated\",\r\n    \"publicReleaseDate\": \"sdo:datePublished\",\r\n    \"publications\": \"sdo:citation\",\r\n    \"people\": \"sdo:creator\",\r\n    \"studies\": \"sdo:hasPart\",\r\n    \"ontologySourceReferences\": \"sdo:mentions\",\r\n    \"comments\": \"sdo:disambiguatingDescription\",\r\n\r\n    \"publications?\": \"sdo:subjectOf?\",\r\n    \"filename\": \"sdo:alternateName\"\r\n  }\r\n}\r\n    ";
 

package/{ISA/ISA.Json → Json}/context/rocrate/isa_material_attribute_context.js

@@ -1,6 +1,6 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 
 export class IContext extends Record {
     constructor(sdo, arc, MaterialAttribute, ArcMaterialAttribute, characteristicType) {
@@ -14,7 +14,7 @@ export class IContext extends Record {
 }
 
 export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.MaterialAttribute.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["MaterialAttribute", string_type], ["ArcMaterialAttribute", string_type], ["characteristicType", string_type]]);
+    return record_type("ARCtrl.Json.ROCrateContext.MaterialAttribute.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["MaterialAttribute", string_type], ["ArcMaterialAttribute", string_type], ["characteristicType", string_type]]);
 }
 
 export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["MaterialAttribute", new Json(0, ["sdo:Property"])], ["ArcMaterialAttribute", new Json(0, ["arc:ARC#ARC_00000050"])], ["characteristicType", new Json(0, ["arc:ARC#ARC_00000098"])]]]);

package/Json/context/rocrate/isa_material_attribute_value_context.js

@@ -0,0 +1,23 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, MaterialAttributeValue, ArcMaterialAttributeValue, category, value, unit) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.MaterialAttributeValue = MaterialAttributeValue;
+        this.ArcMaterialAttributeValue = ArcMaterialAttributeValue;
+        this.category = category;
+        this.value = value;
+        this.unit = unit;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.MaterialAttributeValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["MaterialAttributeValue", string_type], ["ArcMaterialAttributeValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["MaterialAttributeValue", new Json(0, ["sdo:PropertyValue"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["category", new Json(0, ["sdo:name"])], ["categoryCode", new Json(0, ["sdo:propertyID"])], ["value", new Json(0, ["sdo:value"])], ["valueCode", new Json(0, ["sdo:valueReference"])], ["unit", new Json(0, ["sdo:unitText"])], ["unitCode", new Json(0, ["sdo:unitCode"])]]]);
+

package/Json/context/rocrate/isa_material_context.js

@@ -0,0 +1,26 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Material, ArcMaterial, type, name, characteristics, derivesFrom) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Material = Material;
+        this.ArcMaterial = ArcMaterial;
+        this.type = type;
+        this.name = name;
+        this.characteristics = characteristics;
+        this.derivesFrom = derivesFrom;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Material.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Material", string_type], ["ArcMaterial", string_type], ["type", string_type], ["name", string_type], ["characteristics", string_type], ["derivesFrom", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["bio", new Json(0, ["https://bioschemas.org/"])], ["Material", new Json(0, ["bio:Sample"])], ["type", new Json(0, ["sdo:disambiguatingDescription"])], ["name", new Json(0, ["sdo:name"])], ["characteristics", new Json(0, ["bio:additionalProperty"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"ArcMaterial\": \"arc:ARC#ARC_00000108\",\r\n    \"Material\": \"sdo:Thing\",\r\n\r\n    \"type\": \"arc:ARC#ARC_00000085\",\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\",\r\n    \"derivesFrom\": \"arc:ARC#ARC_00000082\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_ontology_annotation_context.js

@@ -0,0 +1,23 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, OntologyAnnotation, annotationValue, termSource, termAccession, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.OntologyAnnotation = OntologyAnnotation;
+        this.annotationValue = annotationValue;
+        this.termSource = termSource;
+        this.termAccession = termAccession;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.OntologyAnnotation.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["OntologyAnnotation", string_type], ["annotationValue", string_type], ["termSource", string_type], ["termAccession", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["OntologyAnnotation", new Json(0, ["sdo:DefinedTerm"])], ["annotationValue", new Json(0, ["sdo:name"])], ["termSource", new Json(0, ["sdo:inDefinedTermSet"])], ["termAccession", new Json(0, ["sdo:termCode"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
+

package/Json/context/rocrate/isa_ontology_source_reference_context.js

@@ -0,0 +1,26 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, OntologySourceReference, description, name, file, version, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.OntologySourceReference = OntologySourceReference;
+        this.description = description;
+        this.name = name;
+        this.file = file;
+        this.version = version;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.OntologySourceReference.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["OntologySourceReference", string_type], ["description", string_type], ["name", string_type], ["file", string_type], ["version", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["OntologySourceReference", new Json(0, ["sdo:DefinedTermSet"])], ["description", new Json(0, ["sdo:description"])], ["name", new Json(0, ["sdo:name"])], ["file", new Json(0, ["sdo:url"])], ["version", new Json(0, ["sdo:version"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"OntologySourceReference\": \"sdo:DefinedTermSet\",\r\n    \r\n    \"description\": \"sdo:description\",\r\n    \"name\": \"sdo:name\",\r\n    \"file\": \"sdo:url\",\r\n    \"version\": \"sdo:version\",\r\n    \"comments\": \"sdo:disambiguatingDescription\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_organization_context.js

@@ -0,0 +1,22 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Organization, name) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Organization = Organization;
+        this.name = name;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Organization.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Organization", string_type], ["name", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Organization", new Json(0, ["sdo:Organization"])], ["name", new Json(0, ["sdo:name"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Organization\": \"sdo:Organization\",\r\n    \r\n    \"name\": \"sdo:name\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_person_context.js

@@ -0,0 +1,33 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Person, firstName, lastName, midInitials, email, address, phone, fax, comments, roles, affiliation) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Person = Person;
+        this.firstName = firstName;
+        this.lastName = lastName;
+        this.midInitials = midInitials;
+        this.email = email;
+        this.address = address;
+        this.phone = phone;
+        this.fax = fax;
+        this.comments = comments;
+        this.roles = roles;
+        this.affiliation = affiliation;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Person.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Person", string_type], ["firstName", string_type], ["lastName", string_type], ["midInitials", string_type], ["email", string_type], ["address", string_type], ["phone", string_type], ["fax", string_type], ["comments", string_type], ["roles", string_type], ["affiliation", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Person", new Json(0, ["sdo:Person"])], ["orcid", new Json(0, ["sdo:identifier"])], ["firstName", new Json(0, ["sdo:givenName"])], ["lastName", new Json(0, ["sdo:familyName"])], ["midInitials", new Json(0, ["sdo:additionalName"])], ["email", new Json(0, ["sdo:email"])], ["address", new Json(0, ["sdo:address"])], ["phone", new Json(0, ["sdo:telephone"])], ["fax", new Json(0, ["sdo:faxNumber"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])], ["roles", new Json(0, ["sdo:jobTitle"])], ["affiliation", new Json(0, ["sdo:affiliation"])]]]);
+
+export const contextMinimal_jsonValue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Person", new Json(0, ["sdo:Person"])], ["name", new Json(0, ["sdo:name"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Person\": \"sdo:Person\",\r\n    \"firstName\": \"sdo:givenName\",\r\n    \"lastName\": \"sdo:familyName\",\r\n    \"midInitials\": \"sdo:additionalName\",\r\n    \"email\": \"sdo:email\",\r\n    \"address\": \"sdo:address\",\r\n    \"phone\": \"sdo:telephone\",\r\n    \"fax\": \"sdo:faxNumber\",\r\n    \"comments\": \"sdo:disambiguatingDescription\",\r\n    \"roles\": \"sdo:jobTitle\",\r\n    \"affiliation\": \"sdo:affiliation\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_process_context.js

@@ -0,0 +1,29 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Process, ArcProcess, name, executesProtocol, performer, date, previousProcess, nextProcess, input, output, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Process = Process;
+        this.ArcProcess = ArcProcess;
+        this.name = name;
+        this.executesProtocol = executesProtocol;
+        this.performer = performer;
+        this.date = date;
+        this.previousProcess = previousProcess;
+        this.nextProcess = nextProcess;
+        this.input = input;
+        this.output = output;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Process.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Process", string_type], ["ArcProcess", string_type], ["name", string_type], ["executesProtocol", string_type], ["performer", string_type], ["date", string_type], ["previousProcess", string_type], ["nextProcess", string_type], ["input", string_type], ["output", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["bio", new Json(0, ["https://bioschemas.org/"])], ["Process", new Json(0, ["bio:LabProcess"])], ["name", new Json(0, ["sdo:name"])], ["executesProtocol", new Json(0, ["bio:executesLabProtocol"])], ["parameterValues", new Json(0, ["bio:parameterValue"])], ["performer", new Json(0, ["sdo:agent"])], ["date", new Json(0, ["sdo:endTime"])], ["inputs", new Json(0, ["sdo:object"])], ["outputs", new Json(0, ["sdo:result"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
+

package/Json/context/rocrate/isa_process_parameter_value_context.js

@@ -0,0 +1,23 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, ProcessParameterValue, ArcProcessParameterValue, category, value, unit) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.ProcessParameterValue = ProcessParameterValue;
+        this.ArcProcessParameterValue = ArcProcessParameterValue;
+        this.category = category;
+        this.value = value;
+        this.unit = unit;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.ProcessParameterValue.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["ProcessParameterValue", string_type], ["ArcProcessParameterValue", string_type], ["category", string_type], ["value", string_type], ["unit", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["ProcessParameterValue", new Json(0, ["sdo:PropertyValue"])], ["category", new Json(0, ["sdo:name"])], ["categoryCode", new Json(0, ["sdo:propertyID"])], ["value", new Json(0, ["sdo:value"])], ["valueCode", new Json(0, ["sdo:valueReference"])], ["unit", new Json(0, ["sdo:unitText"])], ["unitCode", new Json(0, ["sdo:unitCode"])]]]);
+

package/Json/context/rocrate/isa_protocol_context.js

@@ -0,0 +1,28 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Protocol, ArcProtocol, name, protocolType, description, version, components, parameters, uri, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Protocol = Protocol;
+        this.ArcProtocol = ArcProtocol;
+        this.name = name;
+        this.protocolType = protocolType;
+        this.description = description;
+        this.version = version;
+        this.components = components;
+        this.parameters = parameters;
+        this.uri = uri;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Protocol.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Protocol", string_type], ["ArcProtocol", string_type], ["name", string_type], ["protocolType", string_type], ["description", string_type], ["version", string_type], ["components", string_type], ["parameters", string_type], ["uri", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["bio", new Json(0, ["https://bioschemas.org/"])], ["Protocol", new Json(0, ["bio:LabProtocol"])], ["name", new Json(0, ["sdo:name"])], ["protocolType", new Json(0, ["bio:intendedUse"])], ["description", new Json(0, ["sdo:description"])], ["version", new Json(0, ["sdo:version"])], ["components", new Json(0, ["bio:labEquipment"])], ["reagents", new Json(0, ["bio:reagent"])], ["computationalTools", new Json(0, ["bio:computationalTool"])], ["uri", new Json(0, ["sdo:url"])], ["comments", new Json(0, ["sdo:comment"])]]]);
+

package/{ISA/ISA.Json → Json}/context/rocrate/isa_protocol_parameter_context.js

@@ -1,6 +1,6 @@
-import { Record } from "../../../../fable_modules/fable-library-js.4.13.0/Types.js";
-import { record_type, string_type } from "../../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
-import { Json } from "../../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 
 export class IContext extends Record {
     constructor(sdo, arc, ProtocolParamter, ArcProtocolParameter, parameterName) {
@@ -14,7 +14,7 @@ export class IContext extends Record {
 }
 
 export function IContext_$reflection() {
-    return record_type("ARCtrl.ISA.Json.ROCrateContext.ProtocolParameter.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["ProtocolParamter", string_type], ["ArcProtocolParameter", string_type], ["parameterName", string_type]]);
+    return record_type("ARCtrl.Json.ROCrateContext.ProtocolParameter.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["ProtocolParamter", string_type], ["ArcProtocolParameter", string_type], ["parameterName", string_type]]);
 }
 
 export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["arc", new Json(0, ["http://purl.org/nfdi4plants/ontology/"])], ["ProtocolParameter", new Json(0, ["sdo:Thing"])], ["ArcProtocolParameter", new Json(0, ["arc:ARC#ARC_00000063"])], ["parameterName", new Json(0, ["arc:ARC#ARC_00000100"])]]]);

package/Json/context/rocrate/isa_publication_context.js

@@ -0,0 +1,25 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Publication, pubMedID, doi, title, status, authorList, comments) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Publication = Publication;
+        this.pubMedID = pubMedID;
+        this.doi = doi;
+        this.title = title;
+        this.status = status;
+        this.authorList = authorList;
+        this.comments = comments;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Publication.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Publication", string_type], ["pubMedID", string_type], ["doi", string_type], ["title", string_type], ["status", string_type], ["authorList", string_type], ["comments", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Publication", new Json(0, ["sdo:ScholarlyArticle"])], ["pubMedID", new Json(0, ["sdo:url"])], ["doi", new Json(0, ["sdo:sameAs"])], ["title", new Json(0, ["sdo:headline"])], ["status", new Json(0, ["sdo:creativeWorkStatus"])], ["authorList", new Json(0, ["sdo:author"])], ["comments", new Json(0, ["sdo:disambiguatingDescription"])]]]);
+

package/Json/context/rocrate/isa_sample_context.js

@@ -0,0 +1,24 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Sample, ArcSample, name, characteristics, factorValues, derivesFrom) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Sample = Sample;
+        this.ArcSample = ArcSample;
+        this.name = name;
+        this.characteristics = characteristics;
+        this.factorValues = factorValues;
+        this.derivesFrom = derivesFrom;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Sample.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Sample", string_type], ["ArcSample", string_type], ["name", string_type], ["characteristics", string_type], ["factorValues", string_type], ["derivesFrom", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["bio", new Json(0, ["https://bioschemas.org/"])], ["Sample", new Json(0, ["bio:Sample"])], ["name", new Json(0, ["sdo:name"])], ["additionalProperties", new Json(0, ["bio:additionalProperty"])]]]);
+

package/Json/context/rocrate/isa_source_context.js

@@ -0,0 +1,25 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Source, ArcSource, identifier, characteristics, name) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Source = Source;
+        this.ArcSource = ArcSource;
+        this.identifier = identifier;
+        this.characteristics = characteristics;
+        this.name = name;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Source.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Source", string_type], ["ArcSource", string_type], ["identifier", string_type], ["characteristics", string_type], ["name", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["bio", new Json(0, ["https://bioschemas.org/"])], ["Source", new Json(0, ["bio:Sample"])], ["name", new Json(0, ["sdo:name"])], ["characteristics", new Json(0, ["bio:additionalProperty"])]]]);
+
+export const context_str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Source\": \"sdo:Thing\",\r\n    \"ArcSource\": \"arc:ARC#ARC_00000071\",\r\n\r\n    \"identifier\": \"sdo:identifier\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\"\r\n  }\r\n}\r\n    ";
+

package/Json/context/rocrate/isa_study_context.js

@@ -0,0 +1,40 @@
+import { Record } from "../../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { record_type, string_type } from "../../../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { Json } from "../../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+
+export class IContext extends Record {
+    constructor(sdo, arc, Study, ArcStudy, identifier, title, description, submissionDate, publicReleaseDate, publications, people, assays, filename, comments, protocols, materials, otherMaterials, sources, samples, processSequence, factors, characteristicCategories, unitCategories, studyDesignDescriptors) {
+        super();
+        this.sdo = sdo;
+        this.arc = arc;
+        this.Study = Study;
+        this.ArcStudy = ArcStudy;
+        this.identifier = identifier;
+        this.title = title;
+        this.description = description;
+        this.submissionDate = submissionDate;
+        this.publicReleaseDate = publicReleaseDate;
+        this.publications = publications;
+        this.people = people;
+        this.assays = assays;
+        this.filename = filename;
+        this.comments = comments;
+        this.protocols = protocols;
+        this.materials = materials;
+        this.otherMaterials = otherMaterials;
+        this.sources = sources;
+        this.samples = samples;
+        this.processSequence = processSequence;
+        this.factors = factors;
+        this.characteristicCategories = characteristicCategories;
+        this.unitCategories = unitCategories;
+        this.studyDesignDescriptors = studyDesignDescriptors;
+    }
+}
+
+export function IContext_$reflection() {
+    return record_type("ARCtrl.Json.ROCrateContext.Study.IContext", [], IContext, () => [["sdo", string_type], ["arc", string_type], ["Study", string_type], ["ArcStudy", string_type], ["identifier", string_type], ["title", string_type], ["description", string_type], ["submissionDate", string_type], ["publicReleaseDate", string_type], ["publications", string_type], ["people", string_type], ["assays", string_type], ["filename", string_type], ["comments", string_type], ["protocols", string_type], ["materials", string_type], ["otherMaterials", string_type], ["sources", string_type], ["samples", string_type], ["processSequence", string_type], ["factors", string_type], ["characteristicCategories", string_type], ["unitCategories", string_type], ["studyDesignDescriptors", string_type]]);
+}
+
+export const context_jsonvalue = new Json(5, [[["sdo", new Json(0, ["http://schema.org/"])], ["Study", new Json(0, ["sdo:Dataset"])], ["identifier", new Json(0, ["sdo:identifier"])], ["title", new Json(0, ["sdo:headline"])], ["additionalType", new Json(0, ["sdo:additionalType"])], ["description", new Json(0, ["sdo:description"])], ["submissionDate", new Json(0, ["sdo:dateCreated"])], ["publicReleaseDate", new Json(0, ["sdo:datePublished"])], ["publications", new Json(0, ["sdo:citation"])], ["people", new Json(0, ["sdo:creator"])], ["assays", new Json(0, ["sdo:hasPart"])], ["filename", new Json(0, ["sdo:alternateName"])], ["comments", new Json(0, ["sdo:comment"])], ["processSequence", new Json(0, ["sdo:about"])], ["studyDesignDescriptors", new Json(0, ["arc:ARC#ARC_00000037"])]]]);
+