@nfdi4plants/arctrl 1.2.0 → 2.0.0-alpha.2

package/Json/Person.js

@@ -0,0 +1,250 @@
+import { ofArray, choose } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { defaultSpaces, tryIncludeSeq, tryInclude } from "./Encode.js";
+import { OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./OntologyAnnotation.js";
+import { Comment_ROCrate_decoderDisambiguatingDescription, Comment_ROCrate_encoderDisambiguatingDescription, Comment_decoder, Comment_encoder } from "./Comment.js";
+import { array as array_2, map as map_1, string, object } from "../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { Person } from "../Core/Person.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { Decode_objectNoAdditionalProperties, Decode_resizeArray } from "./Decode.js";
+import { tryPick } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { printf, toText, join, split, replace } from "../fable_modules/fable-library-js.4.16.0/String.js";
+import { context_jsonvalue } from "./context/rocrate/isa_organization_context.js";
+import { contextMinimal_jsonValue, context_jsonvalue as context_jsonvalue_1 } from "./context/rocrate/isa_person_context.js";
+import { map } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { Person_setOrcidFromComments, Person_setCommentFromORCID } from "../Core/Conversion.js";
+import { fromString } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { toString } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+
+export function Person_encoder(person) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("firstName", (value) => (new Json(0, [value])), person.FirstName), tryInclude("lastName", (value_2) => (new Json(0, [value_2])), person.LastName), tryInclude("midInitials", (value_4) => (new Json(0, [value_4])), person.MidInitials), tryInclude("orcid", (value_6) => (new Json(0, [value_6])), person.ORCID), tryInclude("email", (value_8) => (new Json(0, [value_8])), person.EMail), tryInclude("phone", (value_10) => (new Json(0, [value_10])), person.Phone), tryInclude("fax", (value_12) => (new Json(0, [value_12])), person.Fax), tryInclude("address", (value_14) => (new Json(0, [value_14])), person.Address), tryInclude("affiliation", (value_16) => (new Json(0, [value_16])), person.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person.Roles), tryIncludeSeq("comments", Comment_encoder, person.Comments)]))]);
+}
+
+export const Person_decoder = object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+    return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string))), unwrap((arg_19 = Decode_resizeArray(OntologyAnnotation_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19)))), unwrap((arg_21 = Decode_resizeArray(Comment_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21)))));
+});
+
+export function Person_ROCrate_genID(p) {
+    const orcid = tryPick((c) => {
+        const matchValue = c.Name;
+        const matchValue_1 = c.Value;
+        let matchResult, n, v;
+        if (matchValue != null) {
+            if (matchValue_1 != null) {
+                matchResult = 0;
+                n = matchValue;
+                v = matchValue_1;
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+        switch (matchResult) {
+            case 0:
+                if (((n === "orcid") ? true : (n === "Orcid")) ? true : (n === "ORCID")) {
+                    return v;
+                }
+                else {
+                    return void 0;
+                }
+            default:
+                return void 0;
+        }
+    }, p.Comments);
+    if (orcid == null) {
+        const matchValue_3 = p.EMail;
+        if (matchValue_3 == null) {
+            const matchValue_4 = p.FirstName;
+            const matchValue_5 = p.MidInitials;
+            const matchValue_6 = p.LastName;
+            let matchResult_1, fn, ln, mn, fn_1, ln_1, ln_2, fn_2;
+            if (matchValue_4 == null) {
+                if (matchValue_5 == null) {
+                    if (matchValue_6 != null) {
+                        matchResult_1 = 2;
+                        ln_2 = matchValue_6;
+                    }
+                    else {
+                        matchResult_1 = 4;
+                    }
+                }
+                else {
+                    matchResult_1 = 4;
+                }
+            }
+            else if (matchValue_5 == null) {
+                if (matchValue_6 == null) {
+                    matchResult_1 = 3;
+                    fn_2 = matchValue_4;
+                }
+                else {
+                    matchResult_1 = 1;
+                    fn_1 = matchValue_4;
+                    ln_1 = matchValue_6;
+                }
+            }
+            else if (matchValue_6 != null) {
+                matchResult_1 = 0;
+                fn = matchValue_4;
+                ln = matchValue_6;
+                mn = matchValue_5;
+            }
+            else {
+                matchResult_1 = 4;
+            }
+            switch (matchResult_1) {
+                case 0:
+                    return (((("#" + replace(fn, " ", "_")) + "_") + replace(mn, " ", "_")) + "_") + replace(ln, " ", "_");
+                case 1:
+                    return (("#" + replace(fn_1, " ", "_")) + "_") + replace(ln_1, " ", "_");
+                case 2:
+                    return "#" + replace(ln_2, " ", "_");
+                case 3:
+                    return "#" + replace(fn_2, " ", "_");
+                default:
+                    return "#EmptyPerson";
+            }
+        }
+        else {
+            return matchValue_3;
+        }
+    }
+    else {
+        return orcid;
+    }
+}
+
+export function Person_ROCrate_Affiliation_encoder(affiliation) {
+    return new Json(5, [[["@type", new Json(0, ["Organization"])], ["@id", new Json(0, [replace(`#Organization_${affiliation}`, " ", "_")])], ["name", new Json(0, [affiliation])], ["@context", context_jsonvalue]]]);
+}
+
+export const Person_ROCrate_Affiliation_decoder = object((get$) => {
+    const objectArg = get$.Required;
+    return objectArg.Field("name", string);
+});
+
+export function Person_ROCrate_encoder(oa) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([["@id", new Json(0, [Person_ROCrate_genID(oa)])], ["@type", new Json(0, ["Person"])], tryInclude("orcid", (value_2) => (new Json(0, [value_2])), oa.ORCID), tryInclude("firstName", (value_4) => (new Json(0, [value_4])), oa.FirstName), tryInclude("lastName", (value_6) => (new Json(0, [value_6])), oa.LastName), tryInclude("midInitials", (value_8) => (new Json(0, [value_8])), oa.MidInitials), tryInclude("email", (value_10) => (new Json(0, [value_10])), oa.EMail), tryInclude("phone", (value_12) => (new Json(0, [value_12])), oa.Phone), tryInclude("fax", (value_14) => (new Json(0, [value_14])), oa.Fax), tryInclude("address", (value_16) => (new Json(0, [value_16])), oa.Address), tryInclude("affiliation", Person_ROCrate_Affiliation_encoder, oa.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_ROCrate_encoderDefinedTerm, oa.Roles), tryIncludeSeq("comments", Comment_ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue_1]]))]);
+}
+
+export const Person_ROCrate_decoder = object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+    return new Person(unwrap((objectArg = get$.Optional, objectArg.Field("orcid", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("lastName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("firstName", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("email", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("phone", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("fax", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("address", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", Person_ROCrate_Affiliation_decoder))), unwrap((arg_19 = Decode_resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", arg_19)))), unwrap((arg_21 = Decode_resizeArray(Comment_ROCrate_decoderDisambiguatingDescription), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21)))));
+});
+
+/**
+ * This is only used for ro-crate creation. In ISA publication authors are only a string. ro-crate requires person object.
+ * Therefore, we try to split the string by common separators and create a minimal person object for ro-crate.
+ */
+export function Person_ROCrate_encodeAuthorListString(authorList) {
+    return new Json(6, [map((name) => (new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([["@type", new Json(0, ["Person"])], tryInclude("name", (value_1) => (new Json(0, [value_1])), name), ["@context", contextMinimal_jsonValue]]))])), map((s) => s.trim(), split(authorList, [(authorList.indexOf("\t") >= 0) ? "\t" : ((authorList.indexOf(";") >= 0) ? ";" : ",")], void 0, 0)))]);
+}
+
+export const Person_ROCrate_decodeAuthorListString = map_1((v) => join(", ", v), array_2(object((get$) => {
+    let objectArg;
+    return defaultArg((objectArg = get$.Optional, objectArg.Field("name", string)), "");
+})));
+
+export const Person_ISAJson_allowedFields = ofArray(["@id", "firstName", "lastName", "midInitials", "email", "phone", "fax", "address", "affiliation", "roles", "comments", "@type", "@context"]);
+
+export function Person_ISAJson_encoder(person) {
+    const person_1 = Person_setCommentFromORCID(person);
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("firstName", (value) => (new Json(0, [value])), person_1.FirstName), tryInclude("lastName", (value_2) => (new Json(0, [value_2])), person_1.LastName), tryInclude("midInitials", (value_4) => (new Json(0, [value_4])), person_1.MidInitials), tryInclude("email", (value_6) => (new Json(0, [value_6])), person_1.EMail), tryInclude("phone", (value_8) => (new Json(0, [value_8])), person_1.Phone), tryInclude("fax", (value_10) => (new Json(0, [value_10])), person_1.Fax), tryInclude("address", (value_12) => (new Json(0, [value_12])), person_1.Address), tryInclude("affiliation", (value_14) => (new Json(0, [value_14])), person_1.Affiliation), tryIncludeSeq("roles", OntologyAnnotation_encoder, person_1.Roles), tryIncludeSeq("comments", Comment_encoder, person_1.Comments)]))]);
+}
+
+export const Person_ISAJson_decoder = Decode_objectNoAdditionalProperties(Person_ISAJson_allowedFields, (get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
+    return Person_setOrcidFromComments(new Person(void 0, unwrap((objectArg = get$.Optional, objectArg.Field("lastName", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("firstName", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("midInitials", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("email", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("phone", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("fax", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("address", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("affiliation", string))), unwrap((arg_17 = Decode_resizeArray(OntologyAnnotation_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("roles", arg_17)))), unwrap((arg_19 = Decode_resizeArray(Comment_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("comments", arg_19))))));
+});
+
+export function ARCtrl_Person__Person_fromJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Person_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Person__Person_toJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = Person_encoder(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Person__Person_fromROCrateJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Person_ROCrate_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+/**
+ * exports in json-ld format
+ */
+export function ARCtrl_Person__Person_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = Person_ROCrate_encoder(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Person__Person_toISAJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = Person_ISAJson_encoder(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Person__Person_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Person_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+

package/Json/Process/AssayMaterials.js

@@ -0,0 +1,22 @@
+import { getMaterials, getSamples } from "../../Core/Process/ProcessSequence.js";
+import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { tryIncludeList } from "../Encode.js";
+import { Sample_ISAJson_encoder } from "./Sample.js";
+import { Material_ISAJson_encoder } from "./Material.js";
+
+export function encoder(ps) {
+    const samples = getSamples(ps);
+    const materials = getMaterials(ps);
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryIncludeList("samples", Sample_ISAJson_encoder, samples), tryIncludeList("otherMaterials", Material_ISAJson_encoder, materials)]))]);
+}
+

package/Json/Process/Component.js

@@ -0,0 +1,79 @@
+import { decoder as decoder_1, encoder } from "./PropertyValue.js";
+import { Component, Component_decomposeName_Z721C83C5, Component__get_ComponentName, Component_createAsPV } from "../../Core/Process/Component.js";
+import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { defaultSpaces, tryInclude } from "../Encode.js";
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { Decode_uri } from "../Decode.js";
+import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+
+export const Component_ROCrate_encoder = encoder;
+
+export const Component_ROCrate_decoder = decoder_1(Component_createAsPV);
+
+export function Component_ISAJson_encoder(c) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("componentName", (value) => (new Json(0, [value])), Component__get_ComponentName(c)), tryInclude("componentType", OntologyAnnotation_ISAJson_encoder, c.ComponentType)]))]);
+}
+
+export const Component_ISAJson_decoder = object((get$) => {
+    let objectArg_1;
+    let name;
+    const objectArg = get$.Optional;
+    name = objectArg.Field("componentName", Decode_uri);
+    let patternInput_1;
+    if (name == null) {
+        patternInput_1 = [void 0, void 0];
+    }
+    else {
+        const patternInput = Component_decomposeName_Z721C83C5(name);
+        patternInput_1 = [patternInput[0], patternInput[1]];
+    }
+    return new Component(patternInput_1[0], patternInput_1[1], (objectArg_1 = get$.Optional, objectArg_1.Field("componentType", OntologyAnnotation_ISAJson_decoder)));
+});
+
+export function ARCtrl_Process_Component__Component_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Component_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_Component__Component_toISAJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = Component_ISAJson_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Process_Component__Component_fromROCrateJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Component_ROCrate_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_Component__Component_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = Component_ROCrate_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+

package/Json/Process/Data.js

@@ -0,0 +1,102 @@
+import { printf, toText, replace } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { URIModule_toString } from "../../Core/URI.js";
+import { ofArray, singleton, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
+import { defaultSpaces, tryIncludeListOpt, tryInclude } from "../Encode.js";
+import { DataFile_ISAJson_decoder, DataFile_ISAJson_encoder, DataFile_ROCrate_decoder, DataFile_ROCrate_encoder } from "./DataFile.js";
+import { Comment_ISAJson_decoder, Comment_ISAJson_encoder, Comment_ROCrate_decoder, Comment_ROCrate_encoder } from "../Comment.js";
+import { context_jsonvalue } from "../context/rocrate/isa_data_context.js";
+import { list as list_2, string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { Decode_objectNoAdditionalProperties, Decode_uri } from "../Decode.js";
+import { Data } from "../../Core/Process/Data.js";
+import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+
+export function Data_ROCrate_genID(d) {
+    const matchValue = d.ID;
+    if (matchValue == null) {
+        const matchValue_1 = d.Name;
+        if (matchValue_1 == null) {
+            return "#EmptyData";
+        }
+        else {
+            return replace(matchValue_1, " ", "_");
+        }
+    }
+    else {
+        return URIModule_toString(matchValue);
+    }
+}
+
+export function Data_ROCrate_encoder(oa) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([["@id", new Json(0, [Data_ROCrate_genID(oa)])], ["@type", list_1(singleton(new Json(0, ["Data"])))], tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("type", DataFile_ROCrate_encoder, oa.DataType), tryIncludeListOpt("comments", Comment_ROCrate_encoder, oa.Comments), ["@context", context_jsonvalue]]))]);
+}
+
+export const Data_ROCrate_decoder = object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3;
+    return new Data((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("type", DataFile_ROCrate_decoder)), (arg_7 = list_2(Comment_ROCrate_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
+});
+
+export function Data_ISAJson_encoder(oa) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), oa.ID), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("type", DataFile_ISAJson_encoder, oa.DataType), tryIncludeListOpt("comments", Comment_ISAJson_encoder, oa.Comments)]))]);
+}
+
+export const Data_ISAJson_allowedFields = ofArray(["@id", "name", "type", "comments", "@type", "@context"]);
+
+export const Data_ISAJson_decoder = Decode_objectNoAdditionalProperties(Data_ISAJson_allowedFields, (get$) => {
+    let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3;
+    return new Data((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("type", DataFile_ISAJson_decoder)), (arg_7 = list_2(Comment_ISAJson_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
+});
+
+export function ARCtrl_Process_Data__Data_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Data_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_Data__Data_toISAJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = Data_ISAJson_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Process_Data__Data_fromROCrateJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Data_ROCrate_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_Data__Data_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = Data_ROCrate_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+

package/Json/Process/DataFile.js

@@ -0,0 +1,81 @@
+import { ErrorReason$1, Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { string } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library-js.4.16.0/Result.js";
+import { DataFile } from "../../Core/Process/DataFile.js";
+import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+import { defaultSpaces } from "../Encode.js";
+
+export function DataFile_ROCrate_encoder(value) {
+    switch (value.tag) {
+        case 1:
+            return new Json(0, ["Derived Data File"]);
+        case 2:
+            return new Json(0, ["Image File"]);
+        default:
+            return new Json(0, ["Raw Data File"]);
+    }
+}
+
+export const DataFile_ROCrate_decoder = {
+    Decode(s, json) {
+        const matchValue = string.Decode(s, json);
+        if (matchValue.tag === 1) {
+            return new FSharpResult$2(1, [matchValue.fields[0]]);
+        }
+        else {
+            switch (matchValue.fields[0]) {
+                case "Raw Data File":
+                    return new FSharpResult$2(0, [new DataFile(0, [])]);
+                case "Derived Data File":
+                    return new FSharpResult$2(0, [new DataFile(1, [])]);
+                case "Image File":
+                    return new FSharpResult$2(0, [new DataFile(2, [])]);
+                default: {
+                    const s_1 = matchValue.fields[0];
+                    return new FSharpResult$2(1, [[`Could not parse ${s_1}.`, new ErrorReason$1(0, [s_1, json])]]);
+                }
+            }
+        }
+    },
+};
+
+export const DataFile_ISAJson_encoder = DataFile_ROCrate_encoder;
+
+export const DataFile_ISAJson_decoder = DataFile_ROCrate_decoder;
+
+export function ARCtrl_Process_DataFile__DataFile_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(DataFile_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_DataFile__DataFile_toISAJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = DataFile_ISAJson_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+
+export function ARCtrl_Process_DataFile__DataFile_fromROCrateJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(DataFile_ROCrate_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_DataFile__DataFile_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = DataFile_ROCrate_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+

package/Json/Process/Factor.js

@@ -0,0 +1,48 @@
+import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { defaultSpaces, tryIncludeSeq, tryInclude } from "../Encode.js";
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { Comment_ISAJson_decoder, Comment_ISAJson_encoder } from "../Comment.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { Decode_resizeArray } from "../Decode.js";
+import { Factor } from "../../Core/Process/Factor.js";
+import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+
+export function Factor_ISAJson_encoder(value) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("factorName", (value_1) => (new Json(0, [value_1])), value.Name), tryInclude("factorType", OntologyAnnotation_ISAJson_encoder, value.FactorType), tryIncludeSeq("comments", Comment_ISAJson_encoder, defaultArg(value.Comments, []))]))]);
+}
+
+export const Factor_ISAJson_decoder = object((get$) => {
+    let objectArg, objectArg_1, arg_5, objectArg_2;
+    return new Factor((objectArg = get$.Optional, objectArg.Field("factorName", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("factorType", OntologyAnnotation_ISAJson_decoder)), (arg_5 = Decode_resizeArray(Comment_ISAJson_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("comments", arg_5))));
+});
+
+export function ARCtrl_Process_Factor__Factor_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(Factor_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_Factor__Factor_toISAJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = Factor_ISAJson_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+

package/Json/Process/FactorValue.js

@@ -0,0 +1,53 @@
+import { decoder as decoder_1, encoder } from "./PropertyValue.js";
+import { FactorValue, FactorValue_createAsPV } from "../../Core/Process/FactorValue.js";
+import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { defaultSpaces, tryInclude } from "../Encode.js";
+import { Factor_ISAJson_decoder, Factor_ISAJson_encoder } from "./Factor.js";
+import { Value_ISAJson_decoder, Value_ISAJson_encoder } from "./Value.js";
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
+import { Decode_uri } from "../Decode.js";
+import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+
+export const FactorValue_ROCrate_encoder = encoder;
+
+export const FactorValue_ROCrate_decoder = decoder_1(FactorValue_createAsPV);
+
+export function FactorValue_ISAJson_encoder(fv) {
+    return new Json(5, [choose((tupledArg) => {
+        const v = tupledArg[1];
+        if (equals(v, new Json(3, []))) {
+            return void 0;
+        }
+        else {
+            return [tupledArg[0], v];
+        }
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), fv.ID), tryInclude("category", Factor_ISAJson_encoder, fv.Category), tryInclude("value", Value_ISAJson_encoder, fv.Value), tryInclude("unit", OntologyAnnotation_ISAJson_encoder, fv.Unit)]))]);
+}
+
+export const FactorValue_ISAJson_decoder = object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3;
+    return new FactorValue((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("category", Factor_ISAJson_decoder)), (objectArg_2 = get$.Optional, objectArg_2.Field("value", Value_ISAJson_decoder)), (objectArg_3 = get$.Optional, objectArg_3.Field("unit", OntologyAnnotation_ISAJson_decoder)));
+});
+
+export function ARCtrl_Process_FactorValue__FactorValue_fromISAJsonString_Static_Z721C83C5(s) {
+    const matchValue = fromString(FactorValue_ISAJson_decoder, s);
+    if (matchValue.tag === 1) {
+        throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+
+export function ARCtrl_Process_FactorValue__FactorValue_toISAJsonString_Static_71136F3F(spaces) {
+    return (f) => {
+        const value = FactorValue_ISAJson_encoder(f);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+