@nac3/forge-cli 0.2.1-alpha.60 → 1.0.1

package/dist/semantic_graph/derive.js

@@ -19,7 +19,39 @@
 import { promises as fs } from 'node:fs';
 import path from 'node:path';
 import { ingestFromPackageJson } from '../chat/semantic_graph_ingest.js';
-import { upsertNodes, upsertEdges, pruneDanglingEdges } from './store.js';
+import { upsertNodes, upsertEdges, pruneDanglingEdges, pruneStaleDerivedNodes } from './store.js';
+import { extractImportSpecifiersAst } from './ast_extract.js';
+/* PND-078 -- prefer the TS AST import walk (robust to comments/strings);
+ * fall back to the regex for non-TS/JS files or on a parse failure. */
+const TS_JS_FILE = /\.(tsx?|jsx?|mjs|cjs)$/i;
+function importSpecifiersFor(source, fileName) {
+    if (TS_JS_FILE.test(fileName)) {
+        try {
+            return extractImportSpecifiersAst(source, fileName);
+        }
+        catch { /* fall back */ }
+    }
+    return extractImportSpecifiers(source);
+}
+/** Directorios que NUNCA son codigo del proyecto: caches, deps, build,
+ *  control de versiones, entornos. Excluir siempre (antes el scanner
+ *  tomaba src/__pycache__ como si fuera un modulo -- PND graph). */
+const EXCLUDED_DIRS = new Set([
+    'node_modules', 'dist', 'build', 'out', 'coverage',
+    '__pycache__', '.pytest_cache', '.mypy_cache', '.ruff_cache',
+    'venv', '.venv', 'env', '.tox', 'site-packages',
+    '.git', '.svn', '.hg',
+    '.next', '.expo', '.expo-shared', '.gradle', '.idea', '.vscode',
+    'target', 'bin', 'obj', '__snapshots__', '.cache',
+]);
+function isExcludedDir(name) {
+    return name.startsWith('.') || EXCLUDED_DIRS.has(name);
+}
+/** Source files we index as nodes (multi-language, not just JS/TS). */
+const SOURCE_FILE_RE = /\.(ts|tsx|js|jsx|mjs|cjs|py|go|rb|rs|java|kt|php|cs|swift|c|cpp|h|hpp)$/;
+function isSourceFile(name) {
+    return SOURCE_FILE_RE.test(name) && !name.endsWith('.d.ts');
+}
 /** Directorios que cuentan como un modulo (un nodo cada uno). */
 async function discoverModuleDirs(projectRoot) {
     const mods = [];
@@ -32,6 +64,11 @@ async function discoverModuleDirs(projectRoot) {
     /* packages/* y apps/* (sus raices son modulos de nivel superior). */
     await collectChildDirs(projectRoot, 'packages', add);
     await collectChildDirs(projectRoot, 'apps', add);
+    /* PND-089 -- proyectos React Native / Expo ponen el codigo en app/ +
+     * components/ en la raiz (no en src/). Sin esto el grafo de un proyecto
+     * RN queda vacio. */
+    await collectChildDirs(projectRoot, 'app', add);
+    await collectChildDirs(projectRoot, 'components', add);
     return mods;
 }
 async function collectChildDirs(root, parent, add) {
@@ -44,7 +81,7 @@ async function collectChildDirs(root, parent, add) {
         return;
     }
     for (const e of entries) {
-        if (e.startsWith('.') || e === 'node_modules' || e === 'dist')
+        if (isExcludedDir(e))
             continue;
         let st;
         try {
@@ -57,6 +94,32 @@ async function collectChildDirs(root, parent, add) {
             add(parent + '/' + e);
     }
 }
+/** Loose source FILES (not inside a sub-directory) at a given parent.
+ *  These are real code units the dir-based scan misses -- e.g. a Python
+ *  project with src/robot.py and no package sub-dir. One node per file. */
+async function collectLooseFiles(root, parent, add) {
+    const abs = parent ? path.join(root, parent) : root;
+    let entries;
+    try {
+        entries = await fs.readdir(abs);
+    }
+    catch {
+        return;
+    }
+    for (const e of entries) {
+        if (e.startsWith('.') || !isSourceFile(e))
+            continue;
+        let st;
+        try {
+            st = await fs.stat(path.join(abs, e));
+        }
+        catch {
+            continue;
+        }
+        if (st.isFile())
+            add(parent ? parent + '/' + e : e, e);
+    }
+}
 /** npm/dir name -> id token (lowercase, alfanumerico + dashes). */
 function sanitiseId(name) {
     return name.replace(/^@/, '').replace(/[/]/g, '-').replace(/[^a-z0-9\-_]/gi, '-').toLowerCase();
@@ -100,7 +163,7 @@ async function walkSourceFiles(absDir) {
         return out;
     }
     for (const e of entries) {
-        if (e.startsWith('.') || e === 'node_modules' || e === 'dist')
+        if (isExcludedDir(e))
             continue;
         const full = path.join(absDir, e);
         let st;
@@ -117,6 +180,50 @@ async function walkSourceFiles(absDir) {
     }
     return out;
 }
+/** Discover loose source files (incl. .py) as nodes. Looks at the
+ *  project root + src/ + packages/* + apps/* roots -- files NOT nested
+ *  in a sub-directory module. Returns {id, name, rel} per file. */
+async function discoverLooseFiles(projectRoot) {
+    const seen = new Set();
+    const files = [];
+    const add = (rel, base) => {
+        const noExt = base.replace(/\.[^.]+$/, '');
+        const id = 'module.' + sanitiseId(noExt);
+        if (seen.has(id))
+            return;
+        seen.add(id);
+        files.push({ id, name: base, rel: rel.replace(/\\/g, '/') });
+    };
+    await collectLooseFiles(projectRoot, '', add);
+    await collectLooseFiles(projectRoot, 'src', add);
+    /* PND-089 -- RN/Expo flat files under app/ + components/ */
+    await collectLooseFiles(projectRoot, 'app', add);
+    await collectLooseFiles(projectRoot, 'components', add);
+    /* loose files directly under each packages/* and apps/* root */
+    for (const parent of ['packages', 'apps']) {
+        let subs;
+        try {
+            subs = await fs.readdir(path.join(projectRoot, parent));
+        }
+        catch {
+            continue;
+        }
+        for (const s of subs) {
+            if (isExcludedDir(s))
+                continue;
+            let st;
+            try {
+                st = await fs.stat(path.join(projectRoot, parent, s));
+            }
+            catch {
+                continue;
+            }
+            if (st.isDirectory())
+                await collectLooseFiles(projectRoot, parent + '/' + s, add);
+        }
+    }
+    return files;
+}
 /** PND-081 -- purpose real de un modulo: el doc-comment inicial
  *  (/​** ... *​/) del archivo "principal" del dir (index, o el de
  *  igual nombre, o el mas grande). Cae a un texto generico si no
@@ -171,6 +278,161 @@ async function deriveModulePurpose(projectRoot, relDir, name) {
     const text = cleaned.length > 240 ? cleaned.slice(0, 237) + '...' : cleaned;
     return text + ' (' + relDir + ')';
 }
+/** First meaningful comment / header line of a script, for a one-line
+ *  purpose. Skips the shebang + blank lines; understands #, //, ;, --,
+ *  and /​* *​/ comment styles. ASCII-trimmed to ~160 chars. */
+function firstDocLine(content) {
+    const lines = content.split('\n').slice(0, 40);
+    for (let raw of lines) {
+        let l = raw.trim();
+        if (!l || l.startsWith('#!'))
+            continue; /* shebang */
+        /* strip a leading comment marker */
+        const m = l.match(/^(#+|\/\/+|;+|--|\/\*+|\*+)\s?(.*)$/);
+        if (!m)
+            continue;
+        l = (m[2] || '').replace(/\*+\/\s*$/, '').trim(); /* trailing */
+        if (l.length < 3)
+            continue;
+        return l.length > 160 ? l.slice(0, 157) + '...' : l;
+    }
+    return '';
+}
+/** Tooling we discover GENERICALLY across any repo (this ships to
+ *  customers, each with their own CI/CD + scripts -- nothing hardcoded
+ *  to yujin-forge). Three families, each a 'tooling' node so it lands in
+ *  the graph + the prompt:
+ *    - CI/CD: .github/workflows/*, plus single-file CIs (GitLab,
+ *      CircleCI, Azure, Jenkins, Travis, Drone, Bitbucket).
+ *    - npm scripts: package.json "scripts" (the universal task runner).
+ *    - scripts dir: scripts/ (shell/node/python/powershell helpers).
+ *  id prefix encodes the family: tool.ci.* / tool.npm.* / tool.script.*
+ *  so the renderer can group them. */
+export async function discoverTooling(projectRoot) {
+    const now = new Date().toISOString();
+    const out = [];
+    const mk = (id, name, purpose) => ({
+        id, kind: 'tooling', name, source: 'tooling-scan',
+        purpose: purpose.length > 200 ? purpose.slice(0, 197) + '...' : purpose,
+        solves: [], do_not_invent: [], api_surface: [],
+        confidence: 'auto', weight: 0.7, added_at: now, updated_at: now,
+    });
+    const read = async (rel) => {
+        try {
+            return await fs.readFile(path.join(projectRoot, rel), 'utf-8');
+        }
+        catch {
+            return null;
+        }
+    };
+    /* --- CI/CD: GitHub Actions (one node per workflow file) --- */
+    try {
+        const wfDir = path.join(projectRoot, '.github', 'workflows');
+        const entries = await fs.readdir(wfDir);
+        for (const e of entries) {
+            if (!/\.ya?ml$/i.test(e))
+                continue;
+            const content = (await read('.github/workflows/' + e)) || '';
+            const nameM = content.match(/^name:\s*['"]?(.+?)['"]?\s*$/m);
+            const wfName = nameM ? nameM[1].trim() : e;
+            const triggers = extractYamlTriggers(content);
+            const purpose = 'CI (GitHub Actions): ' + wfName
+                + (triggers.length ? '. Triggers: ' + triggers.join(', ') : '')
+                + ' [.github/workflows/' + e + ']';
+            out.push(mk('tool.ci.' + sanitiseId(e.replace(/\.ya?ml$/i, '')), e, purpose));
+        }
+    }
+    catch { /* no workflows dir */ }
+    /* --- CI/CD: single-file providers --- */
+    const singleCi = [
+        { rel: '.gitlab-ci.yml', provider: 'GitLab CI' },
+        { rel: '.circleci/config.yml', provider: 'CircleCI' },
+        { rel: 'azure-pipelines.yml', provider: 'Azure Pipelines' },
+        { rel: 'Jenkinsfile', provider: 'Jenkins' },
+        { rel: 'bitbucket-pipelines.yml', provider: 'Bitbucket Pipelines' },
+        { rel: '.drone.yml', provider: 'Drone CI' },
+        { rel: '.travis.yml', provider: 'Travis CI' },
+    ];
+    for (const ci of singleCi) {
+        const content = await read(ci.rel);
+        if (content == null)
+            continue;
+        const doc = firstDocLine(content);
+        out.push(mk('tool.ci.' + sanitiseId(ci.rel), ci.rel, 'CI (' + ci.provider + ')' + (doc ? ': ' + doc : '') + ' [' + ci.rel + ']'));
+    }
+    /* --- npm scripts (the universal task runner) --- */
+    const pkgRaw = await read('package.json');
+    if (pkgRaw) {
+        try {
+            const pkg = JSON.parse(pkgRaw);
+            const scripts = pkg.scripts || {};
+            const names = Object.keys(scripts).slice(0, 40); /* cap runaway repos */
+            for (const s of names) {
+                const cmd = String(scripts[s] || '');
+                out.push(mk('tool.npm.' + sanitiseId(s), s, 'npm script "' + s + '": ' + cmd + ' [run: npm run ' + s + ']'));
+            }
+        }
+        catch { /* malformed package.json */ }
+    }
+    /* --- scripts/ directory (shell/node/python/powershell helpers) --- */
+    const SCRIPT_RE = /\.(sh|bash|mjs|cjs|js|ts|py|ps1|rb)$/i;
+    for (const dir of ['scripts', 'script', 'tools']) {
+        let entries;
+        try {
+            entries = await fs.readdir(path.join(projectRoot, dir));
+        }
+        catch {
+            continue;
+        }
+        for (const e of entries.slice(0, 60)) {
+            if (e.startsWith('.') || !SCRIPT_RE.test(e))
+                continue;
+            let st;
+            try {
+                st = await fs.stat(path.join(projectRoot, dir, e));
+            }
+            catch {
+                continue;
+            }
+            if (!st.isFile())
+                continue;
+            const content = (await read(dir + '/' + e)) || '';
+            const doc = firstDocLine(content);
+            out.push(mk('tool.script.' + sanitiseId(dir + '-' + e), e, 'Script ' + e + (doc ? ': ' + doc : '') + ' [' + dir + '/' + e + ']'));
+        }
+    }
+    /* --- Makefile (list the first targets) --- */
+    const mkfile = (await read('Makefile')) || (await read('makefile'));
+    if (mkfile) {
+        const targets = [...mkfile.matchAll(/^([a-zA-Z0-9_][a-zA-Z0-9_\-.]*):/gm)]
+            .map((m) => m[1]).filter((t) => t && t !== '.PHONY').slice(0, 12);
+        if (targets.length) {
+            out.push(mk('tool.script.makefile', 'Makefile', 'Make targets: ' + targets.join(', ') + ' [run: make <target>]'));
+        }
+    }
+    return out;
+}
+/** Pull the trigger keywords out of a GitHub Actions `on:` block --
+ *  handles `on: push`, `on: [push, pr]`, and the block form. Regex-only
+ *  (no YAML dep); good enough for a one-line summary. */
+function extractYamlTriggers(content) {
+    const known = ['push', 'pull_request', 'workflow_dispatch', 'schedule', 'release', 'workflow_call', 'workflow_run'];
+    const found = new Set();
+    const inline = content.match(/^on:\s*(.+)$/m);
+    if (inline && inline[1]) {
+        for (const k of known)
+            if (inline[1].includes(k))
+                found.add(k);
+    }
+    /* block form: indented keys under `on:` */
+    const blockM = content.match(/^on:\s*\n((?:[ \t]+.*\n?)+)/m);
+    if (blockM && blockM[1]) {
+        for (const k of known)
+            if (new RegExp('^[ \\t]+' + k + '\\b', 'm').test(blockM[1]))
+                found.add(k);
+    }
+    return [...found];
+}
 /** Deriva nodos (modulo + libreria) + aristas validadas del
  *  proyecto. No toca el store; el caller persiste. */
 export async function deriveProjectGraph(opts) {
@@ -198,9 +460,34 @@ export async function deriveProjectGraph(opts) {
             confidence: 'auto', weight: 0.6, added_at: now, updated_at: now,
         });
     }
-    const allNodeIds = new Set([...mods.map((m) => m.id), ...libIds]);
+    /* Loose source files (incl. .py) as their own nodes -- the dir-based
+     * scan above misses a project whose code is a flat file (e.g.
+     * src/robot.py). rel -> id so import edges can resolve to them. */
+    const looseFiles = await discoverLooseFiles(opts.project_root);
+    const looseByRel = new Map();
+    for (const lf of looseFiles) {
+        looseByRel.set(lf.rel, lf.id);
+        moduleNodes.push({
+            id: lf.id, kind: 'module', name: lf.name,
+            source: 'ast', purpose: 'Archivo ' + lf.name + ' (' + lf.rel + ').',
+            solves: [], do_not_invent: [], api_surface: [],
+            confidence: 'auto', weight: 0.5, added_at: now, updated_at: now,
+        });
+    }
+    /* Tooling nodes (CI/CD + npm scripts + scripts dir). Generic across
+     * any repo so a customer's pipeline + helpers are DISCOVERED and land
+     * in the prompt -- the model stops inventing build/deploy commands. */
+    const toolingNodes = await discoverTooling(opts.project_root);
+    const allNodeIds = new Set([
+        ...mods.map((m) => m.id), ...libIds, ...looseFiles.map((f) => f.id),
+        ...toolingNodes.map((t) => t.id),
+    ]);
     function moduleForFile(absFile) {
         const rel = path.relative(opts.project_root, absFile).replace(/\\/g, '/');
+        /* exact loose-file match first (its own node), then dir prefix. */
+        const loose = looseByRel.get(rel);
+        if (loose)
+            return loose;
         for (const m of dirMap) {
             if (rel.startsWith(m.dir + '/'))
                 return m.id;
@@ -236,7 +523,7 @@ export async function deriveProjectGraph(opts) {
             catch {
                 continue;
             }
-            for (const spec of extractImportSpecifiers(src)) {
+            for (const spec of importSpecifiersFor(src, f)) {
                 if (spec.startsWith('node:') || spec.startsWith('bun:'))
                     continue;
                 if (spec.startsWith('.') || spec.startsWith('/')) {
@@ -250,6 +537,31 @@ export async function deriveProjectGraph(opts) {
             }
         }
     }
+    /* Loose-file imports (JS/TS specifiers only; .py yields none -- the
+     * Python-import grammar is not parsed here, so loose .py files appear
+     * as nodes without edges, which is correct for now). */
+    for (const lf of looseFiles) {
+        const abs = path.join(opts.project_root, lf.rel);
+        let src;
+        try {
+            src = await fs.readFile(abs, 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        for (const spec of importSpecifiersFor(src, abs)) {
+            if (spec.startsWith('node:') || spec.startsWith('bun:'))
+                continue;
+            if (spec.startsWith('.') || spec.startsWith('/')) {
+                const target = moduleForFile(path.resolve(path.dirname(abs), spec));
+                if (target)
+                    addEdge(lf.id, target, 'uses');
+            }
+            else {
+                addEdge(lf.id, libIdFor(spec), 'depends_on');
+            }
+        }
+    }
     /* Los nodos de libreria del ingest no traen added_at/updated_at
      * (su shape es IngestedNode); normalizarlos para el store. */
     const libNodes = libIngest.map((l) => ({
@@ -259,11 +571,12 @@ export async function deriveProjectGraph(opts) {
     }));
     const edges = [...edgeMap.values()];
     return {
-        nodes: [...moduleNodes, ...libNodes],
+        nodes: [...moduleNodes, ...libNodes, ...toolingNodes],
         edges,
         stats: {
             module_nodes: moduleNodes.length,
             lib_nodes: libIngest.length,
+            tooling_nodes: toolingNodes.length,
             module_edges: edges.filter((e) => e.to_id.startsWith('module.')).length,
             lib_edges: edges.filter((e) => e.to_id.startsWith('lib.')).length,
             skipped_dangling: skipped,
@@ -279,6 +592,12 @@ export async function regenerateAndPersist(opts) {
         await upsertNodes(opts.project_slug, g.nodes);
     if (g.edges.length > 0)
         await upsertEdges(opts.project_slug, g.edges);
+    /* self-heal: drop auto-derived module./lib. nodes the fresh scan no
+     * longer produced (e.g. a stale module.__pycache__). Only when the
+     * scan actually found nodes, so a transient empty scan never wipes. */
+    if (g.nodes.length > 0) {
+        await pruneStaleDerivedNodes(opts.project_slug, g.nodes.map((n) => n.id));
+    }
     const pruned = await pruneDanglingEdges(opts.project_slug);
     return { ...g.stats, pruned: pruned.removed };
 }

package/dist/semantic_graph/derive.js.map

@@ -1 +1 @@
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package/dist/semantic_graph/store.d.ts

@@ -35,6 +35,15 @@ export declare function summarize(project_slug: string): Promise<GraphSummary>;
 export declare function pruneDanglingEdges(project_slug: string): Promise<{
     removed: number;
 }>;
+/** Prune stale auto-DERIVED nodes (module.* / lib.*) that the latest
+ *  scan no longer produced -- e.g. an old `module.__pycache__` left over
+ *  before the scanner learned to exclude it. Scoped tightly: only
+ *  confidence='auto' nodes with a module./lib. id prefix, never the
+ *  comp.* watcher nodes nor the chat-declared 'claimed' domain nodes.
+ *  `keepIds` is the id set the fresh derive just upserted. */
+export declare function pruneStaleDerivedNodes(project_slug: string, keepIds: Iterable<string>): Promise<{
+    removed: number;
+}>;
 /** Wipe both tables for a project (yf graph forget). */
 export declare function forgetGraph(project_slug: string): Promise<void>;
 /** Test seam preserved for compatibility -- the store no longer

package/dist/semantic_graph/store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"store.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/store.ts"],"names":[],"mappings":"AA2BA,OAAO,EACL,KAAK,SAAS,EAAE,KAAK,SAAS,EAAE,KAAK,YAAY,EACjD,KAAK,aAAa,EACnB,MAAM,YAAY,CAAC;AAiHpB,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AACzE,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AAEzE,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAmDtG;AAED,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAgCtG;AAED,MAAM,WAAW,aAAa;IAC5B,mEAAmE;IACnE,IAAI,CAAC,EAAK,MAAM,CAAC;IACjB,KAAK,CAAC,EAAI,aAAa,EAAE,CAAC;IAC1B,KAAK,CAAC,EAAI,MAAM,CAAC;IACjB;4CACwC;IACxC,cAAc,CAAC,EAAE,SAAS,GAAG,MAAM,GAAG,UAAU,CAAC;CAClD;AAID,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,EAAE,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CA2B/F;AAED,wBAAsB,OAAO,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC,CAOzF;AAED,wBAAsB,aAAa,CAAC,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO/F;AAED;;;oEAGoE;AACpE,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO7E;AAED,wBAAsB,SAAS,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CAsB3E;AAED;;;;oEAIoE;AACpE,wBAAsB,kBAAkB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAY3F;AAED,wDAAwD;AACxD,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAUrE;AAyCD;;mCAEmC;AACnC,wBAAgB,gBAAgB,IAAI,IAAI,CAAgB"}
+{"version":3,"file":"store.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/store.ts"],"names":[],"mappings":"AA2BA,OAAO,EACL,KAAK,SAAS,EAAE,KAAK,SAAS,EAAE,KAAK,YAAY,EACjD,KAAK,aAAa,EACnB,MAAM,YAAY,CAAC;AAiHpB,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AACzE,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AAEzE,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAmDtG;AAED,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAgCtG;AAED,MAAM,WAAW,aAAa;IAC5B,mEAAmE;IACnE,IAAI,CAAC,EAAK,MAAM,CAAC;IACjB,KAAK,CAAC,EAAI,aAAa,EAAE,CAAC;IAC1B,KAAK,CAAC,EAAI,MAAM,CAAC;IACjB;4CACwC;IACxC,cAAc,CAAC,EAAE,SAAS,GAAG,MAAM,GAAG,UAAU,CAAC;CAClD;AAID,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,EAAE,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CA2B/F;AAED,wBAAsB,OAAO,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC,CAOzF;AAED,wBAAsB,aAAa,CAAC,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO/F;AAED;;;oEAGoE;AACpE,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO7E;AAED,wBAAsB,SAAS,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CAsB3E;AAED;;;;oEAIoE;AACpE,wBAAsB,kBAAkB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAY3F;AAED;;;;;8DAK8D;AAC9D,wBAAsB,sBAAsB,CAC1C,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GAC9C,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAgB9B;AAED,wDAAwD;AACxD,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAUrE;AAyCD;;mCAEmC;AACnC,wBAAgB,gBAAgB,IAAI,IAAI,CAAgB"}

package/dist/semantic_graph/store.js

@@ -278,7 +278,7 @@ export async function summarize(project_slug) {
         const node_count = db.prepare('SELECT COUNT(*) AS n FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ?').get(LOCAL_USER_HANDLE, project_slug).n;
         const edge_count = db.prepare('SELECT COUNT(*) AS n FROM semantic_graph_edges WHERE user_handle = ? AND project_slug = ?').get(LOCAL_USER_HANDLE, project_slug).n;
         const by_kind_rows = db.prepare('SELECT kind, COUNT(*) AS n FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ? GROUP BY kind').all(LOCAL_USER_HANDLE, project_slug);
-        const by_kind = { library: 0, protocol: 0, component: 0, module: 0 };
+        const by_kind = { library: 0, protocol: 0, component: 0, module: 0, tooling: 0 };
         for (const r of by_kind_rows)
             by_kind[r.kind] = r.n;
         const last = db.prepare('SELECT MAX(updated_at) AS t FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ?').get(LOCAL_USER_HANDLE, project_slug).t;
@@ -307,6 +307,28 @@ export async function pruneDanglingEdges(project_slug) {
         return { removed: r.changes };
     });
 }
+/** Prune stale auto-DERIVED nodes (module.* / lib.*) that the latest
+ *  scan no longer produced -- e.g. an old `module.__pycache__` left over
+ *  before the scanner learned to exclude it. Scoped tightly: only
+ *  confidence='auto' nodes with a module./lib. id prefix, never the
+ *  comp.* watcher nodes nor the chat-declared 'claimed' domain nodes.
+ *  `keepIds` is the id set the fresh derive just upserted. */
+export async function pruneStaleDerivedNodes(project_slug, keepIds) {
+    const keep = new Set(keepIds);
+    return withDb(project_slug, (db) => {
+        const rows = db.prepare("SELECT id FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ?"
+            + " AND confidence = 'auto' AND (id LIKE 'module.%' OR id LIKE 'lib.%' OR id LIKE 'tool.%')").all(LOCAL_USER_HANDLE, project_slug);
+        const del = db.prepare('DELETE FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ? AND id = ?');
+        let removed = 0;
+        for (const r of rows) {
+            if (!keep.has(r.id)) {
+                del.run(LOCAL_USER_HANDLE, project_slug, r.id);
+                removed++;
+            }
+        }
+        return { removed };
+    });
+}
 /** Wipe both tables for a project (yf graph forget). */
 export async function forgetGraph(project_slug) {
     try {

package/dist/semantic_graph/store.js.map

@@ -1 +1 @@
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package/dist/semantic_graph/types.d.ts

@@ -12,7 +12,7 @@
  *
  * ASCII-only.
  */
-export type GraphNodeKind = 'library' | 'protocol' | 'component' | 'module';
+export type GraphNodeKind = 'library' | 'protocol' | 'component' | 'module' | 'tooling';
 export type GraphEdgeKind = 'uses' | 'depends_on' | 'replaces' | 'implements' | 'solved_by';
 export type GraphConfidence = 'verified' | 'auto' | 'claimed';
 export interface GraphNode {

package/dist/semantic_graph/types.d.ts.map

@@ -1 +1 @@
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