@mycelish/cli 0.1.0 → 0.2.0

package/dist/commands/status.js

@@ -11,6 +11,7 @@ import { Command } from "commander";
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import { TOOL_REGISTRY, ALL_TOOL_IDS, resolvePath, expandPath, pathExists, formatStatus, } from "@mycelish/core";
+import { loadStateManifest } from "../core/manifest-state.js";
 // Memory scope mapping - derived from registry
 const TOOL_MEMORY_SCOPES = Object.fromEntries(Object.values(TOOL_REGISTRY).map(desc => [desc.id, desc.scopes]));
 // ============================================================================
@@ -44,6 +45,18 @@ async function countSkills(skillsPath) {
         return 0;
     }
 }
+/**
+ * Count files (symlinks, regular files, directories) in a directory, excluding hidden files
+ */
+async function countFilesInDir(dirPath) {
+    try {
+        const entries = await fs.readdir(dirPath, { withFileTypes: true });
+        return entries.filter(e => !e.name.startsWith(".")).length;
+    }
+    catch {
+        return 0;
+    }
+}
 /**
  * Count the number of MCPs in a tool's MCP config file
  */
@@ -81,14 +94,15 @@ async function getMemoryFilesForTool(myceliumPath, toolId) {
 /**
  * Determine sync status based on skill and MCP counts
  */
-function determineSyncStatus(isDisabled, skillsCount, mcpsCount, toolPathExists) {
+function determineSyncStatus(isDisabled, skillsCount, mcpsCount, toolPathExists, agentsCount = 0, rulesCount = 0, commandsCount = 0) {
     if (isDisabled) {
         return "disabled";
     }
-    if (!toolPathExists && skillsCount === 0 && mcpsCount === 0) {
+    const totalItems = skillsCount + mcpsCount + agentsCount + rulesCount + commandsCount;
+    if (!toolPathExists && totalItems === 0) {
         return "pending";
     }
-    if (skillsCount > 0 || mcpsCount > 0) {
+    if (totalItems > 0) {
         return "synced";
     }
     return "pending";
@@ -97,23 +111,38 @@ function determineSyncStatus(isDisabled, skillsCount, mcpsCount, toolPathExists)
  * Get status for a specific tool using explicit paths (for testing)
  */
 export async function getToolStatusFromPath(toolId, options) {
-    const { myceliumPath, toolSkillsPath, toolMcpPath, isDisabled = false } = options;
+    const { myceliumPath, toolSkillsPath, toolMcpPath, isDisabled = false, itemState } = options;
+    const desc = TOOL_REGISTRY[toolId];
     // Count skills synced to tool
     const skillsCount = await countSkills(toolSkillsPath);
     // Count MCPs in tool config
     const mcpsCount = await countMcps(toolMcpPath);
+    // Count agents/rules/commands from their directories
+    const agentsCount = desc.capabilities.includes("agents")
+        ? await countFilesInDir(resolvePath(desc.paths.agents) ?? "")
+        : 0;
+    const rulesCount = desc.capabilities.includes("rules")
+        ? await countFilesInDir(resolvePath(desc.paths.rules) ?? "")
+        : 0;
+    const commandsCount = desc.capabilities.includes("commands")
+        ? await countFilesInDir(resolvePath(desc.paths.commands) ?? "")
+        : 0;
     // Get memory files for tool
     const memoryFiles = await getMemoryFilesForTool(myceliumPath, toolId);
     // Check if tool path exists
     const toolPathExists = await pathExists(toolSkillsPath);
     // Determine status
-    const status = determineSyncStatus(isDisabled, skillsCount, mcpsCount, toolPathExists);
+    const status = determineSyncStatus(isDisabled, skillsCount, mcpsCount, toolPathExists, agentsCount, rulesCount, commandsCount);
     return {
         tool: toolId,
         status,
         skillsCount,
         mcpsCount,
+        agentsCount,
+        rulesCount,
+        commandsCount,
         memoryFiles,
+        itemState,
     };
 }
 /**
@@ -149,14 +178,22 @@ export async function getToolStatus(toolId) {
 export async function getAllStatusFromPath(myceliumPath) {
     const toolIds = ALL_TOOL_IDS;
     const statuses = [];
-    // Load manifest to check disabled tools
+    // Load manifest to check disabled/deleted tools and their state
     let disabledTools = new Set();
+    let toolStates = new Map();
     try {
         const manifestPath = path.join(myceliumPath, "manifest.json");
         const manifestContent = await fs.readFile(manifestPath, "utf-8");
         const manifest = JSON.parse(manifestContent);
         for (const [toolId, config] of Object.entries(manifest.tools || {})) {
-            if (config.enabled === false) {
+            const toolConfig = config;
+            if (toolConfig.state) {
+                toolStates.set(toolId, toolConfig.state);
+                if (toolConfig.state === "disabled" || toolConfig.state === "deleted") {
+                    disabledTools.add(toolId);
+                }
+            }
+            else if (toolConfig.enabled === false) {
                 disabledTools.add(toolId);
             }
         }
@@ -167,12 +204,14 @@ export async function getAllStatusFromPath(myceliumPath) {
     for (const toolId of toolIds) {
         const desc = TOOL_REGISTRY[toolId];
         const isDisabled = !desc.enabled || disabledTools.has(toolId);
+        const itemState = toolStates.get(toolId);
         const status = await getToolStatusFromPath(toolId, {
             myceliumPath,
             toolSkillsPath: resolvePath(desc.paths.skills) ?? "",
             toolMcpPath: resolvePath(desc.paths.mcp) ?? "",
             toolMemoryPath: resolvePath(desc.paths.globalMemory) ?? "",
             isDisabled,
+            itemState,
         });
         statuses.push(status);
     }
@@ -200,17 +239,44 @@ export function formatStatusOutput(statuses, options = {}) {
     lines.push("Tools:");
     // Format each tool status
     for (const status of statuses) {
+        // Hide deleted items unless --all is passed
+        if (status.itemState === "deleted" && !options.showAll) {
+            continue;
+        }
         const desc2 = TOOL_REGISTRY[status.tool];
         const toolName = desc2.display.name.padEnd(14);
         const statusStr = formatStatus(status.status);
+        // State markers
+        const stateMarker = status.itemState === "disabled"
+            ? " [disabled]"
+            : status.itemState === "deleted"
+                ? " [deleted]"
+                : "";
         if (status.status === "disabled") {
-            lines.push(`  ${toolName}${statusStr}`);
+            lines.push(`  ${toolName}${statusStr}${stateMarker}`);
         }
         else {
             const skills = `Skills: ${status.skillsCount}`.padEnd(12);
             const mcps = `MCPs: ${status.mcpsCount}`.padEnd(10);
+            const agents = status.agentsCount > 0 ? `Agents: ${status.agentsCount}`.padEnd(12) : "";
+            const rules = status.rulesCount > 0 ? `Rules: ${status.rulesCount}`.padEnd(11) : "";
+            const commands = status.commandsCount > 0 ? `Cmds: ${status.commandsCount}`.padEnd(10) : "";
             const memory = `Memory: ${status.memoryFiles.length} files`;
-            lines.push(`  ${toolName}${statusStr}    ${skills}${mcps}${memory}`);
+            lines.push(`  ${toolName}${statusStr}    ${skills}${mcps}${agents}${rules}${commands}${memory}${stateMarker}`);
+        }
+    }
+    // Plugin Takeover section (sync — loaded externally for testability)
+    if (options._takenOverPlugins) {
+        const plugins = options._takenOverPlugins;
+        if (Object.keys(plugins).length > 0) {
+            lines.push("");
+            lines.push("Plugin Takeover [Experimental]:");
+            for (const [pluginId, info] of Object.entries(plugins)) {
+                // Count how many skills are active (not in disabled statuses)
+                const totalSkills = info.allSkills.length;
+                // We show total for now; disabled count requires manifest cross-ref
+                lines.push(`  ${pluginId}: ${totalSkills} skills managed`);
+            }
         }
     }
     // Config paths
@@ -231,7 +297,7 @@ export function formatStatusOutput(statuses, options = {}) {
  */
 export function formatStatusJson(statuses, options = {}) {
     return JSON.stringify({
-        tools: statuses,
+        tools: options.showAll ? statuses : statuses.filter(s => s.itemState !== "deleted"),
         config: {
             global: options.globalConfigPath,
             project: options.projectConfigPath,
@@ -246,16 +312,21 @@ export const statusCommand = new Command("status")
     .description("Show sync status of all tools")
     .option("-j, --json", "Output as JSON")
     .option("-v, --verbose", "Show detailed status")
+    .option("-a, --all", "Show all items including deleted")
     .action(async (options) => {
     try {
         const statuses = await getAllStatus();
         const myceliumPath = expandPath("~/.mycelium");
         const projectPath = ".mycelium/";
         const projectExists = await pathExists(path.join(process.cwd(), projectPath));
+        // Load manifest for plugin takeover info
+        const manifest = await loadStateManifest(myceliumPath);
         const outputOptions = {
             globalConfigPath: "~/.mycelium/",
             projectConfigPath: projectPath,
             projectConfigExists: projectExists,
+            showAll: options.all,
+            _takenOverPlugins: manifest?.takenOverPlugins,
         };
         if (options.json) {
             console.log(formatStatusJson(statuses, outputOptions));

package/dist/commands/status.js.map

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package/dist/commands/status.test.js

@@ -228,6 +228,9 @@ describe("status command", () => {
                     status: "synced",
                     skillsCount: 12,
                     mcpsCount: 8,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: ["memory1.md", "memory2.md", "memory3.md"],
                 },
                 {
@@ -235,6 +238,9 @@ describe("status command", () => {
                     status: "disabled",
                     skillsCount: 0,
                     mcpsCount: 0,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: [],
                 },
             ];
@@ -256,6 +262,9 @@ describe("status command", () => {
                     status: "synced",
                     skillsCount: 12,
                     mcpsCount: 8,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: ["m1.md"],
                 },
                 {
@@ -263,6 +272,9 @@ describe("status command", () => {
                     status: "pending",
                     skillsCount: 0,
                     mcpsCount: 0,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: [],
                 },
                 {
@@ -270,6 +282,9 @@ describe("status command", () => {
                     status: "error",
                     skillsCount: 0,
                     mcpsCount: 0,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: [],
                     error: "Config not found",
                 },
@@ -278,6 +293,9 @@ describe("status command", () => {
                     status: "disabled",
                     skillsCount: 0,
                     mcpsCount: 0,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: [],
                 },
             ];
@@ -292,6 +310,72 @@ describe("status command", () => {
             // Gray for disabled: \u001b[90m
             expect(output).toContain("\u001b[90m");
         });
+        it("shows [disabled] marker for disabled items", async () => {
+            const { formatStatusOutput } = await import("./status.js");
+            const statuses = [
+                {
+                    tool: "claude-code",
+                    status: "synced",
+                    skillsCount: 5,
+                    mcpsCount: 3,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
+                    memoryFiles: ["m1.md"],
+                    itemState: "disabled",
+                },
+            ];
+            const output = formatStatusOutput(statuses);
+            expect(output).toContain("[disabled]");
+        });
+        it("hides deleted items by default", async () => {
+            const { formatStatusOutput } = await import("./status.js");
+            const statuses = [
+                {
+                    tool: "claude-code",
+                    status: "synced",
+                    skillsCount: 5,
+                    mcpsCount: 3,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
+                    memoryFiles: ["m1.md"],
+                    itemState: "deleted",
+                },
+                {
+                    tool: "codex",
+                    status: "synced",
+                    skillsCount: 2,
+                    mcpsCount: 1,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
+                    memoryFiles: [],
+                },
+            ];
+            const output = formatStatusOutput(statuses);
+            expect(output).not.toContain("Claude Code");
+            expect(output).toContain("Codex");
+        });
+        it("shows deleted items with [deleted] marker when --all is passed", async () => {
+            const { formatStatusOutput } = await import("./status.js");
+            const statuses = [
+                {
+                    tool: "claude-code",
+                    status: "synced",
+                    skillsCount: 5,
+                    mcpsCount: 3,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
+                    memoryFiles: ["m1.md"],
+                    itemState: "deleted",
+                },
+            ];
+            const output = formatStatusOutput(statuses, { showAll: true });
+            expect(output).toContain("Claude Code");
+            expect(output).toContain("[deleted]");
+        });
         it("shows global and project config paths", async () => {
             const { formatStatusOutput } = await import("./status.js");
             const statuses = [
@@ -300,6 +384,9 @@ describe("status command", () => {
                     status: "synced",
                     skillsCount: 12,
                     mcpsCount: 8,
+                    agentsCount: 0,
+                    rulesCount: 0,
+                    commandsCount: 0,
                     memoryFiles: [],
                 },
             ];
@@ -324,6 +411,11 @@ describe("status command", () => {
             const jsonOption = statusCommand.options.find((opt) => opt.short === "-j" || opt.long === "--json");
             expect(jsonOption).toBeDefined();
         });
+        it("has --all option", async () => {
+            const { statusCommand } = await import("./status.js");
+            const allOption = statusCommand.options.find((opt) => opt.short === "-a" || opt.long === "--all");
+            expect(allOption).toBeDefined();
+        });
         it("has verbose output option", async () => {
             const { statusCommand } = await import("./status.js");
             const verboseOption = statusCommand.options.find((opt) => opt.short === "-v" || opt.long === "--verbose");

package/dist/commands/status.test.js.map

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package/dist/commands/sync.d.ts.map

@@ -1 +1 @@
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