@mycelish/cli 0.1.0 → 0.2.0

package/dist/commands/migrate.js.map

@@ -1 +1 @@
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package/dist/commands/preset.test.js

@@ -5,9 +5,13 @@ vi.mock("node:fs/promises", () => ({
     readFile: vi.fn(),
     readdir: vi.fn(),
 }));
-vi.mock("@mycelish/core", () => ({
-    expandPath: (p) => p.replace("~", "/mock/home"),
-}));
+vi.mock("@mycelish/core", async (importOriginal) => {
+    const actual = await importOriginal();
+    return {
+        ...actual,
+        expandPath: (p) => p.replace("~", "/mock/home"),
+    };
+});
 describe("createPreset", () => {
     it("creates a preset from config", async () => {
         const { createPreset } = await import("../core/presets.js");

package/dist/commands/preset.test.js.map

@@ -1 +1 @@
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package/dist/commands/remove.d.ts

@@ -1,34 +1,36 @@
 /**
- * Remove command — remove skills, MCPs, or hooks from mycelium config.
+ * Remove command — soft-delete items from mycelium sync.
  *
- * mycelium remove skill <name>       — Remove a skill symlink + manifest entry
- * mycelium remove mcp <name>         — Remove an MCP from mcps.yaml + manifest
- * mycelium remove hook <name>        — Remove a hook from hooks.yaml + manifest
- * mycelium remove plugin <name>      — Remove all skills from a plugin at once
+ * mycelium remove <name>              — Find item in manifest, set state: "deleted"
+ * mycelium remove <name> --type mcp   — Disambiguate when name exists in multiple sections
+ * mycelium remove plugin <name>       — Mark all items from that source as deleted
  *
  * After removing, run `mycelium sync` to propagate to tool configs.
  */
 import { Command } from "commander";
-export declare function removeSkill(name: string): Promise<{
-    removed: boolean;
+export interface RemoveResult {
+    success: boolean;
+    name: string;
+    section?: string;
+    message?: string;
     error?: string;
-}>;
-export declare function removeComponent(type: string, name: string): Promise<{
-    removed: boolean;
-    error?: string;
-}>;
-export declare function removeMcp(name: string): Promise<{
-    removed: boolean;
-    error?: string;
-}>;
-export declare function removeHook(name: string): Promise<{
-    removed: boolean;
-    error?: string;
-}>;
-export declare function removePlugin(pluginName: string): Promise<{
+}
+export interface RemoveBySourceResult {
     removed: string[];
     errors: string[];
-}>;
-export declare function listRemovable(): Promise<void>;
+}
+/**
+ * Remove (soft-delete) an item by setting state: "deleted" in manifest.
+ */
+export declare function removeItem(name: string, opts?: {
+    type?: string;
+    manifestDir?: string;
+}): Promise<RemoveResult>;
+/**
+ * Mark all items from a given source as deleted.
+ */
+export declare function removeBySource(source: string, opts?: {
+    manifestDir?: string;
+}): Promise<RemoveBySourceResult>;
 export declare const removeCommand: Command;
 //# sourceMappingURL=remove.d.ts.map

package/dist/commands/remove.d.ts.map

@@ -1 +1 @@
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package/dist/commands/remove.js

@@ -1,274 +1,139 @@
 /**
- * Remove command — remove skills, MCPs, or hooks from mycelium config.
+ * Remove command — soft-delete items from mycelium sync.
  *
- * mycelium remove skill <name>       — Remove a skill symlink + manifest entry
- * mycelium remove mcp <name>         — Remove an MCP from mcps.yaml + manifest
- * mycelium remove hook <name>        — Remove a hook from hooks.yaml + manifest
- * mycelium remove plugin <name>      — Remove all skills from a plugin at once
+ * mycelium remove <name>              — Find item in manifest, set state: "deleted"
+ * mycelium remove <name> --type mcp   — Disambiguate when name exists in multiple sections
+ * mycelium remove plugin <name>       — Mark all items from that source as deleted
  *
  * After removing, run `mycelium sync` to propagate to tool configs.
  */
 import { Command } from "commander";
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
-import { readFileIfExists, MYCELIUM_HOME } from "../core/fs-helpers.js";
-import { loadManifest, saveManifest } from "../core/migrator/index.js";
-const MYCELIUM_DIR = MYCELIUM_HOME;
+import { expandPath } from "@mycelish/core";
+import { getTracer } from "../core/global-tracer.js";
+import { loadStateManifest, saveStateManifest, ITEM_SECTIONS, ALL_ITEM_TYPES, sectionForType, } from "../core/manifest-state.js";
 // ============================================================================
-// Core remove functions
+// Manifest helpers
 // ============================================================================
-export async function removeSkill(name) {
-    return removeComponent("skill", name);
-}
-export async function removeComponent(type, name) {
-    const dir = type === "lib" ? "libs" : `${type}s`;
-    const itemPath = path.join(MYCELIUM_DIR, "global", dir, name);
+async function resolveManifestDir() {
+    const projectDir = path.join(process.cwd(), ".mycelium");
     try {
-        await fs.unlink(itemPath);
+        await fs.access(path.join(projectDir, "manifest.yaml"));
+        return projectDir;
     }
     catch {
-        // Not found on disk is OK — still remove from manifest
-    }
-    // Remove from manifest
-    const manifest = await loadManifest();
-    const before = manifest.entries.length;
-    manifest.entries = manifest.entries.filter((e) => !(e.type === type && e.name === name));
-    if (manifest.entries.length === before) {
-        return { removed: false, error: `${type} "${name}" not found in manifest` };
-    }
-    await saveManifest(manifest);
-    return { removed: true };
-}
-export async function removeMcp(name) {
-    const mcpsPath = path.join(MYCELIUM_DIR, "global", "mcps.yaml");
-    const content = await readFileIfExists(mcpsPath);
-    if (!content) {
-        return { removed: false, error: "No mcps.yaml found" };
-    }
-    // Parse YAML and remove the named MCP block
-    const lines = content.split("\n");
-    const newLines = [];
-    let skipping = false;
-    let found = false;
-    for (const line of lines) {
-        const trimmed = line.trim();
-        // Top-level key (no indentation, ends with colon, no spaces in key)
-        if (!line.startsWith(" ") && !line.startsWith("\t") && trimmed.endsWith(":") && !trimmed.startsWith("#")) {
-            const key = trimmed.slice(0, -1);
-            if (key === name) {
-                skipping = true;
-                found = true;
-                continue;
-            }
-            skipping = false;
-        }
-        if (!skipping) {
-            newLines.push(line);
-        }
-    }
-    if (!found) {
-        return { removed: false, error: `MCP "${name}" not found in mcps.yaml` };
+        return expandPath("~/.mycelium");
     }
-    // Clean up trailing blank lines
-    const cleaned = newLines.join("\n").replace(/\n{3,}/g, "\n\n").trimEnd() + "\n";
-    await fs.writeFile(mcpsPath, cleaned, "utf-8");
-    // Remove from manifest
-    const manifest = await loadManifest();
-    manifest.entries = manifest.entries.filter((e) => !(e.type === "mcp" && e.name === name));
-    await saveManifest(manifest);
-    return { removed: true };
 }
-export async function removeHook(name) {
-    const hooksPath = path.join(MYCELIUM_DIR, "global", "hooks.yaml");
-    const content = await readFileIfExists(hooksPath);
-    if (!content) {
-        return { removed: false, error: "No hooks.yaml found" };
-    }
-    const lines = content.split("\n");
-    const newLines = [];
-    let skipping = false;
-    let found = false;
-    for (const line of lines) {
-        const trimmed = line.trim();
-        if (!line.startsWith(" ") && !line.startsWith("\t") && trimmed.endsWith(":") && !trimmed.startsWith("#")) {
-            const key = trimmed.slice(0, -1);
-            if (key === name) {
-                skipping = true;
-                found = true;
-                continue;
-            }
-            skipping = false;
-        }
-        if (!skipping) {
-            newLines.push(line);
-        }
-    }
-    if (!found) {
-        return { removed: false, error: `Hook "${name}" not found in hooks.yaml` };
-    }
-    const cleaned = newLines.join("\n").replace(/\n{3,}/g, "\n\n").trimEnd() + "\n";
-    await fs.writeFile(hooksPath, cleaned, "utf-8");
-    const manifest = await loadManifest();
-    manifest.entries = manifest.entries.filter((e) => !(e.type === "hook" && e.name === name));
-    await saveManifest(manifest);
-    return { removed: true };
+// ============================================================================
+// Type flag to section mapping
+// ============================================================================
+function typeToSection(type) {
+    return sectionForType(type);
 }
-export async function removePlugin(pluginName) {
-    const manifest = await loadManifest();
-    const pluginEntries = manifest.entries.filter((e) => e.pluginName === pluginName || e.marketplace === pluginName);
-    if (pluginEntries.length === 0) {
-        return { removed: [], errors: [`No entries found for plugin "${pluginName}"`] };
-    }
-    const removed = [];
-    const errors = [];
-    for (const entry of pluginEntries) {
-        let result;
-        if (entry.type === "mcp") {
-            result = await removeMcp(entry.name);
-        }
-        else if (entry.type === "hook") {
-            result = await removeHook(entry.name);
-            // If hook not in hooks.yaml, still clean up manifest
-            if (!result.removed) {
-                result = await removeComponent("hook", entry.name);
-            }
-        }
-        else {
-            result = await removeComponent(entry.type, entry.name);
-        }
-        if (result.removed) {
-            removed.push(`${entry.type}: ${entry.name}`);
-        }
-        else if (result.error) {
-            errors.push(result.error);
-        }
-    }
-    return { removed, errors };
+function sectionToType(section) {
+    const entry = ITEM_SECTIONS.find(s => s.key === section);
+    return entry?.type ?? section;
 }
 // ============================================================================
-// List what can be removed
+// Core functions
 // ============================================================================
-export async function listRemovable() {
-    // Skills
-    const skillsDir = path.join(MYCELIUM_DIR, "global", "skills");
-    try {
-        const entries = await fs.readdir(skillsDir);
-        if (entries.length > 0) {
-            console.log(`\nSkills (${entries.length}):`);
-            // Group by plugin from manifest
-            const manifest = await loadManifest();
-            const grouped = new Map();
-            for (const name of entries) {
-                const entry = manifest.entries.find((e) => e.name === name && e.type === "skill");
-                const group = entry?.pluginName
-                    ? `${entry.marketplace}/${entry.pluginName}`
-                    : entry?.source ?? "unknown";
-                const list = grouped.get(group) ?? [];
-                list.push(name);
-                grouped.set(group, list);
-            }
-            for (const [group, names] of grouped) {
-                console.log(`  ${group}:`);
-                for (const name of names) {
-                    console.log(`    - ${name}`);
-                }
-            }
+/**
+ * Find an item across all manifest sections. Returns all matches.
+ */
+function findItemInManifest(manifest, name) {
+    const matches = [];
+    for (const { key: section } of ITEM_SECTIONS) {
+        const sectionData = manifest[section];
+        if (sectionData && typeof sectionData === "object" && !Array.isArray(sectionData) && name in sectionData) {
+            matches.push({ section, config: sectionData[name] });
         }
     }
-    catch { /* empty */ }
-    // MCPs
-    const mcpsContent = await readFileIfExists(path.join(MYCELIUM_DIR, "global", "mcps.yaml"));
-    if (mcpsContent) {
-        const mcpNames = [];
-        for (const line of mcpsContent.split("\n")) {
-            const trimmed = line.trim();
-            if (!line.startsWith(" ") && trimmed.endsWith(":") && !trimmed.startsWith("#") && trimmed !== "mcps:") {
-                mcpNames.push(trimmed.slice(0, -1));
-            }
-        }
-        if (mcpNames.length > 0) {
-            console.log(`\nMCPs (${mcpNames.length}):`);
-            for (const name of mcpNames) {
-                console.log(`  - ${name}`);
-            }
-        }
+    return matches;
+}
+/**
+ * Remove (soft-delete) an item by setting state: "deleted" in manifest.
+ */
+export async function removeItem(name, opts) {
+    const log = getTracer().createTrace("remove");
+    log.info({ scope: "manifest", op: "remove", msg: `Removing ${name}`, item: name });
+    const manifestDir = opts?.manifestDir ?? await resolveManifestDir();
+    const manifest = await loadStateManifest(manifestDir);
+    if (!manifest) {
+        const error = `Could not load manifest from ${manifestDir}`;
+        log.error({ scope: "manifest", op: "remove", msg: error, item: name, error });
+        return { success: false, name, error };
+    }
+    let matches = findItemInManifest(manifest, name);
+    // Filter by type if provided
+    if (opts?.type) {
+        const section = typeToSection(opts.type);
+        if (!section) {
+            return { success: false, name, error: `Invalid type: ${opts.type}. Use: ${ALL_ITEM_TYPES.join(", ")}` };
+        }
+        matches = matches.filter((m) => m.section === section);
+    }
+    if (matches.length === 0) {
+        const error = `'${name}' not found in manifest`;
+        log.error({ scope: "manifest", op: "remove", msg: error, item: name, error });
+        return { success: false, name, error };
+    }
+    if (matches.length > 1 && !opts?.type) {
+        const sections = matches.map((m) => sectionToType(m.section));
+        return {
+            success: false,
+            name,
+            error: `'${name}' found in multiple sections: ${sections.join(", ")}. Use --type to disambiguate.`,
+        };
+    }
+    const match = matches[0];
+    match.config.state = "deleted";
+    // Write back
+    const sectionData = manifest[match.section];
+    sectionData[name] = match.config;
+    await saveStateManifest(manifestDir, manifest);
+    const msg = `${sectionToType(match.section)} '${name}' marked as deleted`;
+    log.info({ scope: "manifest", op: "remove", msg, item: name });
+    return { success: true, name, section: sectionToType(match.section), message: msg };
+}
+/**
+ * Mark all items from a given source as deleted.
+ */
+export async function removeBySource(source, opts) {
+    const manifestDir = opts?.manifestDir ?? await resolveManifestDir();
+    const manifest = await loadStateManifest(manifestDir);
+    if (!manifest) {
+        return { removed: [], errors: [`Could not load manifest from ${manifestDir}`] };
     }
-    // Hooks
-    const hooksContent = await readFileIfExists(path.join(MYCELIUM_DIR, "global", "hooks.yaml"));
-    if (hooksContent) {
-        const hookNames = [];
-        for (const line of hooksContent.split("\n")) {
-            const trimmed = line.trim();
-            if (!line.startsWith(" ") && trimmed.endsWith(":") && !trimmed.startsWith("#")) {
-                hookNames.push(trimmed.slice(0, -1));
-            }
-        }
-        if (hookNames.length > 0) {
-            console.log(`\nHooks (${hookNames.length}):`);
-            for (const name of hookNames) {
-                console.log(`  - ${name}`);
+    const removed = [];
+    for (const { key: section } of ITEM_SECTIONS) {
+        const sectionData = manifest[section];
+        if (!sectionData || typeof sectionData !== "object" || Array.isArray(sectionData))
+            continue;
+        for (const [name, config] of Object.entries(sectionData)) {
+            if (config.source === source) {
+                config.state = "deleted";
+                removed.push(`${sectionToType(section)}: ${name}`);
             }
         }
     }
-    console.log("\nUsage:");
-    console.log("  mycelium remove skill <name>");
-    console.log("  mycelium remove mcp <name>");
-    console.log("  mycelium remove hook <name>");
-    console.log("  mycelium remove plugin <name>  (removes all skills from a plugin)");
-    console.log("\nAfter removing, run `mycelium sync` to propagate changes to all tools.");
+    if (removed.length === 0) {
+        return { removed: [], errors: [`No items found with source '${source}'`] };
+    }
+    await saveStateManifest(manifestDir, manifest);
+    return { removed, errors: [] };
 }
 // ============================================================================
 // Commander.js Commands
 // ============================================================================
-const skillCmd = new Command("skill")
-    .description("Remove a skill from mycelium")
-    .argument("<name>", "Skill name")
-    .action(async (name) => {
-    const result = await removeSkill(name);
-    if (result.removed) {
-        console.log(`Removed skill: ${name}`);
-        console.log("Run `mycelium sync` to propagate to all tools.");
-    }
-    else {
-        console.error(result.error);
-        process.exit(1);
-    }
-});
-const mcpCmd = new Command("mcp")
-    .description("Remove an MCP from mycelium")
-    .argument("<name>", "MCP name")
-    .action(async (name) => {
-    const result = await removeMcp(name);
-    if (result.removed) {
-        console.log(`Removed MCP: ${name}`);
-        console.log("Run `mycelium sync` to propagate to all tools.");
-    }
-    else {
-        console.error(result.error);
-        process.exit(1);
-    }
-});
-const hookCmd = new Command("hook")
-    .description("Remove a hook from mycelium")
-    .argument("<name>", "Hook name")
-    .action(async (name) => {
-    const result = await removeHook(name);
-    if (result.removed) {
-        console.log(`Removed hook: ${name}`);
-        console.log("Run `mycelium sync` to propagate to all tools.");
-    }
-    else {
-        console.error(result.error);
-        process.exit(1);
-    }
-});
 const pluginCmd = new Command("plugin")
-    .description("Remove all skills from a plugin")
-    .argument("<name>", "Plugin name (e.g., 'superpowers')")
+    .description("Remove all items from a plugin/source")
+    .argument("<name>", "Plugin/source name")
     .action(async (name) => {
-    const result = await removePlugin(name);
+    const result = await removeBySource(name);
     if (result.removed.length > 0) {
-        console.log("Removed:");
+        console.log("Marked as deleted:");
         for (const r of result.removed) {
             console.log(`  - ${r}`);
         }
@@ -284,13 +149,19 @@ const pluginCmd = new Command("plugin")
     }
 });
 export const removeCommand = new Command("remove")
-    .description("Remove skills, MCPs, hooks, or plugins from mycelium")
-    .addCommand(skillCmd)
-    .addCommand(mcpCmd)
-    .addCommand(hookCmd)
-    .addCommand(pluginCmd)
-    .action(async () => {
-    // No subcommand — list what can be removed
-    await listRemovable();
+    .description("Remove (soft-delete) an item from mycelium sync")
+    .argument("<name>", "Name of the item to remove")
+    .option("--type <type>", "Item type if name is ambiguous")
+    .action(async (name, options) => {
+    const result = await removeItem(name, { type: options.type });
+    if (result.success) {
+        console.log(`✓ ${result.message}`);
+        console.log("Run `mycelium sync` to propagate to all tools.");
+    }
+    else {
+        console.error(`✗ Error: ${result.error}`);
+        process.exit(1);
+    }
 });
+removeCommand.addCommand(pluginCmd);
 //# sourceMappingURL=remove.js.map

package/dist/commands/remove.js.map

@@ -1 +1 @@
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