@mycelish/cli 0.1.0 → 0.2.0

package/dist/commands/disable.js

@@ -1,182 +1,186 @@
 /**
  * Disable Command Module
  *
- * Disable a skill or MCP globally or for a specific tool:
- * - mycelium disable <name>              # Disable skill/MCP at project level
- * - mycelium disable <name> --global     # Disable skill/MCP globally
- * - mycelium disable <name> --tool <id>  # Disable skill/MCP for specific tool only
+ * Disable a skill, MCP, hook, or memory item globally or for a specific tool:
+ * - mycelium disable <name>              # Disable item at project level
+ * - mycelium disable <name> --global     # Disable item globally
+ * - mycelium disable <name> --tool <id>  # Disable item for specific tool only
  */
 import { Command } from "commander";
-import * as fs from "node:fs/promises";
-import * as path from "node:path";
-import { parse as yamlParse, stringify as yamlStringify } from "yaml";
-import { TOOL_REGISTRY, ALL_TOOL_IDS, expandPath } from "@mycelish/core";
-// ============================================================================
-// Helper Functions
-// ============================================================================
-/**
- * Load manifest from a path
- */
-async function loadManifest(manifestDir) {
-    const manifestPath = path.join(manifestDir, "manifest.yaml");
-    try {
-        const content = await fs.readFile(manifestPath, "utf-8");
-        return yamlParse(content);
-    }
-    catch {
-        return null;
-    }
-}
-/**
- * Save manifest to a path
- */
-async function saveManifest(manifestDir, manifest) {
-    const manifestPath = path.join(manifestDir, "manifest.yaml");
-    const content = yamlStringify(manifest);
-    await fs.writeFile(manifestPath, content, "utf-8");
-}
-/**
- * Check if a tool ID is valid
- */
-function isValidToolId(toolId) {
-    return toolId in TOOL_REGISTRY;
-}
-/**
- * Find what type an item is (skill or MCP)
- */
-function findItemType(manifest, name) {
-    if (manifest.skills && name in manifest.skills) {
-        return { type: "skill", config: manifest.skills[name] };
-    }
-    if (manifest.mcps && name in manifest.mcps) {
-        return { type: "mcp", config: manifest.mcps[name] };
-    }
-    return null;
-}
-/**
- * Check if item is already disabled (globally or for a specific tool)
- */
-function isAlreadyDisabled(config, tool) {
-    if (tool) {
-        // Check tool-specific disablement
-        if (config.excludeTools?.includes(tool)) {
-            return true;
-        }
-        // If tools array exists and doesn't include this tool, it's effectively disabled
-        if (config.tools && !config.tools.includes(tool)) {
-            return true;
-        }
-        return false;
-    }
-    // Check global disablement
-    return config.enabled === false;
-}
+import { ALL_TOOL_IDS } from "@mycelish/core";
+import { getTracer } from "../core/global-tracer.js";
+import { loadStateManifest, saveStateManifest, ensureItem, findItemType, setItemInManifest, isValidToolId, resolveManifestDir, } from "../core/manifest-state.js";
+import { getAllPluginsForComponent, setPluginEnabled, syncPluginSymlinks } from "../core/plugin-takeover.js";
+import { scanPluginComponents } from "../core/plugin-scanner.js";
 // ============================================================================
 // Core Disable Function
 // ============================================================================
 /**
- * Disable a skill or MCP
+ * Disable a skill, MCP, hook, or memory item
  */
 export async function disableSkillOrMcp(options) {
     const { name, tool, global: isGlobal } = options;
+    const tracer = getTracer();
+    const log = tracer.createTrace("disable");
+    log.info({ scope: "manifest", op: "disable", msg: `Disabling ${name}`, item: name, tool });
     // Validate tool if provided
     if (tool && !isValidToolId(tool)) {
-        return {
-            success: false,
-            name,
-            error: `Invalid tool: ${tool}. Supported tools: ${ALL_TOOL_IDS.join(", ")}`,
-        };
+        const error = `Invalid tool: ${tool}. Supported tools: ${ALL_TOOL_IDS.join(", ")}`;
+        log.error({ scope: "manifest", op: "disable", msg: error, item: name, error });
+        return { success: false, name, error };
     }
-    // Determine which manifest to use
-    const manifestDir = isGlobal
-        ? options.globalPath || expandPath("~/.mycelium")
-        : options.projectPath || path.join(process.cwd(), ".mycelium");
-    // Load manifest
-    const manifest = await loadManifest(manifestDir);
+    const manifestDir = resolveManifestDir(options);
+    const manifest = await loadStateManifest(manifestDir);
     if (!manifest) {
-        return {
-            success: false,
-            name,
-            error: `Could not load manifest from ${manifestDir}`,
-        };
+        const error = `Could not load manifest from ${manifestDir}`;
+        log.error({ scope: "manifest", op: "disable", msg: error, item: name, error });
+        return { success: false, name, error };
     }
-    // Find the item (skill or MCP)
-    const item = findItemType(manifest, name);
-    if (!item) {
-        return {
-            success: false,
-            name,
-            error: `'${name}' not found in manifest (checked skills and mcps)`,
-        };
+    // Pre-fetch matching plugins (used for type detection and takeover)
+    const matchingPlugins = !tool ? await getAllPluginsForComponent(name) : [];
+    // Detect type from plugin cache if available (agents/commands shouldn't default to "skill")
+    let typeHint;
+    for (const p of matchingPlugins) {
+        const components = await scanPluginComponents(p.cachePath, p.plugin, p.marketplace);
+        const match = components.find(c => c.name === name);
+        if (match) {
+            typeHint = match.type;
+            break;
+        }
+    }
+    // Detect MCP type from config files (mcps.yaml)
+    if (!typeHint) {
+        const { loadGlobalConfig } = await import("../core/config-merger.js");
+        const globalConfig = await loadGlobalConfig();
+        if (globalConfig.mcps?.[name])
+            typeHint = "mcp";
+    }
+    // Find or auto-register item
+    const { type, config, autoRegistered } = ensureItem(manifest, name, "enabled", typeHint);
+    if (autoRegistered) {
+        log.info({ scope: "manifest", op: "disable", msg: `Auto-registered '${name}' as ${type} in manifest`, item: name });
     }
-    const { type, config } = item;
     const level = isGlobal ? "global" : "project";
     // Check if already disabled
     if (isAlreadyDisabled(config, tool)) {
         const toolMsg = tool ? ` for ${tool}` : "";
-        return {
-            success: true,
-            name,
-            type,
-            level,
-            tool,
-            alreadyDisabled: true,
-            message: `${type} '${name}' is already disabled${toolMsg}`,
-        };
+        return { success: true, name, type, level, tool, alreadyDisabled: true, message: `${type} '${name}' is already disabled${toolMsg}` };
     }
-    // Disable the item
+    // Apply disable
     if (tool) {
-        // Disable for specific tool
-        // Add to excludeTools
-        if (!config.excludeTools) {
+        if (!config.excludeTools)
             config.excludeTools = [];
-        }
-        if (!config.excludeTools.includes(tool)) {
+        if (!config.excludeTools.includes(tool))
             config.excludeTools.push(tool);
-        }
-        // Remove from tools array if present
         if (config.tools) {
             config.tools = config.tools.filter((t) => t !== tool);
         }
-        // Remove from enabledTools if present
         if (config.enabledTools) {
             config.enabledTools = config.enabledTools.filter((t) => t !== tool);
         }
     }
     else {
-        // Disable globally
-        config.enabled = false;
+        config.state = "disabled";
     }
-    // Update manifest
-    if (type === "skill") {
-        if (!manifest.skills)
-            manifest.skills = {};
-        manifest.skills[name] = config;
+    setItemInManifest(manifest, name, type, config);
+    await saveStateManifest(manifestDir, manifest);
+    // Remove MCP from tool configs immediately
+    if (type === "mcp") {
+        const { getAdapter } = await import("../core/tool-adapter.js");
+        const toolIds = tool ? [tool] : ALL_TOOL_IDS;
+        for (const tid of toolIds) {
+            try {
+                await getAdapter(tid).remove(name);
+            }
+            catch { /* tool may not be installed */ }
+        }
     }
-    else {
-        if (!manifest.mcps)
-            manifest.mcps = {};
-        manifest.mcps[name] = config;
+    // Plugin takeover: if disabling any component that belongs to a Claude Code plugin,
+    // take over ALL enabled plugins containing it so Mycelium manages their skills.
+    let pluginTakeover = false;
+    if (!tool && matchingPlugins.length > 0) {
+        for (const pluginInfo of matchingPlugins) {
+            // Scan all component types from plugin cache
+            const allPluginComponents = await scanPluginComponents(pluginInfo.cachePath, pluginInfo.plugin, pluginInfo.marketplace);
+            const allComponentNames = allPluginComponents.map(c => c.name);
+            // Collect all disabled items from ALL sections for this plugin
+            const disabledItems = [];
+            const allPluginItemNames = new Set([...pluginInfo.allSkills, ...allComponentNames]);
+            for (const itemName of allPluginItemNames) {
+                const found = findItemType(manifest, itemName);
+                if (found?.config.state === "disabled")
+                    disabledItems.push(itemName);
+            }
+            // Include the current item being disabled
+            if (allPluginItemNames.has(name) && !disabledItems.includes(name)) {
+                disabledItems.push(name);
+            }
+            // Disable plugin in Claude Code settings
+            await setPluginEnabled(pluginInfo.pluginId, false);
+            // Register plugin in takenOverPlugins with all component types
+            if (!manifest.takenOverPlugins)
+                manifest.takenOverPlugins = {};
+            manifest.takenOverPlugins[pluginInfo.pluginId] = {
+                version: pluginInfo.version,
+                cachePath: pluginInfo.cachePath,
+                allSkills: pluginInfo.allSkills,
+                allComponents: allComponentNames,
+            };
+            // Register all plugin components in manifest with pluginOrigin
+            const pluginOrigin = { pluginId: pluginInfo.pluginId, cachePath: pluginInfo.cachePath };
+            for (const comp of allPluginComponents) {
+                const sectionKey = comp.type === "skill" ? "skills" : comp.type === "agent" ? "agents" : comp.type === "command" ? "commands" : comp.type === "hook" ? "hooks" : null;
+                if (!sectionKey)
+                    continue;
+                if (!manifest[sectionKey])
+                    manifest[sectionKey] = {};
+                const section = manifest[sectionKey];
+                const existing = section[comp.name] ?? { state: "enabled" };
+                existing.pluginOrigin = pluginOrigin;
+                section[comp.name] = existing;
+            }
+            // Also register skills from pluginInfo.allSkills (fallback when cache scan returns partial/empty)
+            if (!manifest.skills)
+                manifest.skills = {};
+            for (const skillName of pluginInfo.allSkills) {
+                const existing = manifest.skills[skillName] ?? { state: "enabled" };
+                if (!existing.pluginOrigin)
+                    existing.pluginOrigin = pluginOrigin;
+                manifest.skills[skillName] = existing;
+            }
+            log.info({ scope: "plugin", op: "takeover", msg: `Took over plugin: ${pluginInfo.pluginId}`, item: pluginInfo.pluginId, itemType: typeHint });
+        }
+        await saveStateManifest(manifestDir, manifest);
+        // Sync symlinks declaratively — single source of truth
+        await syncPluginSymlinks(manifestDir);
+        pluginTakeover = true;
+    }
+    // If the item belongs to an already-taken-over plugin, syncPluginSymlinks
+    // wasn't called above (matchingPlugins is empty for already-disabled plugins).
+    // Re-sync to remove the newly disabled item's symlink.
+    if (!pluginTakeover && !tool && manifest.takenOverPlugins && Object.keys(manifest.takenOverPlugins).length > 0) {
+        await syncPluginSymlinks(manifestDir);
     }
-    // Save manifest
-    await saveManifest(manifestDir, manifest);
-    // Build success message
     const toolMsg = tool ? ` for ${tool}` : "";
-    return {
-        success: true,
-        name,
-        type,
-        level,
-        tool,
-        message: `${type} '${name}' disabled${toolMsg}`,
-    };
+    log.info({ scope: "manifest", op: "disable", msg: `${type} '${name}' disabled${toolMsg}`, item: name, tool });
+    return { success: true, name, type, level, tool, pluginTakeover, message: `${type} '${name}' disabled${toolMsg}` };
+}
+function isAlreadyDisabled(config, tool) {
+    if (tool) {
+        if (config.excludeTools?.includes(tool))
+            return true;
+        if (config.tools && !config.tools.includes(tool))
+            return true;
+        return false;
+    }
+    return config.state === "disabled";
 }
 // ============================================================================
 // Commander.js Command
 // ============================================================================
 export const disableCommand = new Command("disable")
-    .description("Disable a skill or MCP")
-    .argument("<name>", "Name of the skill or MCP to disable")
+    .description("Disable a skill, MCP, hook, or memory item")
+    .argument("<name>", "Name of the item to disable")
     .option("-t, --tool <tool>", "Disable only for a specific tool")
     .option("-g, --global", "Disable in global configuration (~/.mycelium/)")
     .action(async (name, options) => {
@@ -191,6 +195,9 @@ export const disableCommand = new Command("disable")
         }
         else {
             console.log(`\u2713 ${result.message}`);
+            if (result.pluginTakeover) {
+                console.log(`  [experimental] Plugin takeover: plugin disabled in Claude Code, skills now managed by Mycelium`);
+            }
         }
     }
     else {

package/dist/commands/disable.js.map

@@ -1 +1 @@
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package/dist/commands/disable.test.js

@@ -2,17 +2,17 @@
  * Tests for disable command module
  * Tests written FIRST following TDD
  */
-import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import * as os from "node:os";
 import { parse as yamlParse, stringify as yamlStringify } from "yaml";
-// Import the module under test (doesn't exist yet - tests will fail)
 import { disableSkillOrMcp, } from "./disable.js";
+import * as pluginTakeover from "../core/plugin-takeover.js";
 describe("Disable Command", () => {
     let tempDir;
     let globalMyceliumPath;
-    // Sample manifest configuration
+    // Sample manifest configuration using state instead of enabled
     const sampleManifest = {
         version: "1.0",
         tools: {
@@ -25,33 +25,42 @@ describe("Disable Command", () => {
         },
         skills: {
             superpowers: {
-                enabled: true,
+                state: "enabled",
             },
             "disabled-skill": {
-                enabled: false,
+                state: "disabled",
             },
             "tool-specific-skill": {
-                enabled: true,
+                state: "enabled",
                 tools: ["claude-code", "codex"],
             },
         },
         mcps: {
             "whark-trading": {
-                enabled: true,
+                state: "enabled",
             },
             "disabled-mcp": {
-                enabled: false,
+                state: "disabled",
             },
             "tool-specific-mcp": {
-                enabled: true,
+                state: "enabled",
                 tools: ["claude-code", "codex"],
             },
         },
+        hooks: {
+            "pre-commit": {
+                state: "enabled",
+                source: "project",
+            },
+            "disabled-hook": {
+                state: "disabled",
+                source: "global",
+            },
+        },
         memory: {
-            scopes: {
-                shared: { sync_to: ["claude-code"], path: "global/memory/shared/", files: [] },
-                coding: { sync_to: ["claude-code"], path: "global/memory/coding/", files: [] },
-                personal: { sync_to: ["openclaw"], path: "global/memory/personal/", files: [] },
+            "shared-context": {
+                state: "enabled",
+                source: "global",
             },
         },
     };
@@ -80,7 +89,7 @@ describe("Disable Command", () => {
                 // Verify manifest was updated
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["superpowers"].enabled).toBe(false);
+                expect(updatedManifest.skills["superpowers"].state).toBe("disabled");
             });
             it("disables MCP globally", async () => {
                 const options = {
@@ -94,7 +103,7 @@ describe("Disable Command", () => {
                 // Verify manifest was updated
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.mcps["whark-trading"].enabled).toBe(false);
+                expect(updatedManifest.mcps["whark-trading"].state).toBe("disabled");
             });
         });
         describe("tool-specific disabling", () => {
@@ -147,7 +156,7 @@ describe("Disable Command", () => {
                 await disableSkillOrMcp(options);
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["superpowers"].enabled).toBe(false);
+                expect(updatedManifest.skills["superpowers"].state).toBe("disabled");
             });
             it("preserves other manifest settings when updating", async () => {
                 const options = {
@@ -161,8 +170,8 @@ describe("Disable Command", () => {
                 // Other settings should be preserved
                 expect(updatedManifest.version).toBe("1.0");
                 expect(updatedManifest.tools["claude-code"].enabled).toBe(true);
-                expect(updatedManifest.skills["disabled-skill"].enabled).toBe(false);
-                expect(updatedManifest.mcps["whark-trading"].enabled).toBe(true);
+                expect(updatedManifest.skills["disabled-skill"].state).toBe("disabled");
+                expect(updatedManifest.mcps["whark-trading"].state).toBe("enabled");
             });
         });
         describe("success messages", () => {
@@ -233,7 +242,7 @@ describe("Disable Command", () => {
                 const projectManifest = {
                     version: "1.0",
                     skills: {
-                        "project-skill": { enabled: true },
+                        "project-skill": { state: "enabled" },
                     },
                     mcps: {},
                 };
@@ -249,7 +258,48 @@ describe("Disable Command", () => {
                 // Verify project manifest was updated
                 const manifestContent = await fs.readFile(path.join(projectPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["project-skill"].enabled).toBe(false);
+                expect(updatedManifest.skills["project-skill"].state).toBe("disabled");
+            });
+        });
+        describe("hook and memory disabling", () => {
+            it("disables a hook globally", async () => {
+                const options = {
+                    name: "pre-commit",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("hook");
+                // Verify manifest was updated
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.hooks["pre-commit"].state).toBe("disabled");
+            });
+            it("handles already disabled hook case", async () => {
+                const options = {
+                    name: "disabled-hook",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.alreadyDisabled).toBe(true);
+                expect(result.type).toBe("hook");
+            });
+            it("disables a memory item globally", async () => {
+                const options = {
+                    name: "shared-context",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("memory");
+                // Verify manifest was updated
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.memory["shared-context"].state).toBe("disabled");
             });
         });
         describe("error handling", () => {
@@ -263,15 +313,15 @@ describe("Disable Command", () => {
                 expect(result.success).toBe(false);
                 expect(result.error).toContain("manifest");
             });
-            it("validates name exists in manifest", async () => {
+            it("auto-registers unknown item as skill and disables it", async () => {
                 const options = {
                     name: "non-existent-skill",
                     global: true,
                     globalPath: globalMyceliumPath,
                 };
                 const result = await disableSkillOrMcp(options);
-                expect(result.success).toBe(false);
-                expect(result.error).toContain("not found");
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("skill");
             });
             it("returns error for invalid tool name", async () => {
                 const options = {
@@ -285,6 +335,50 @@ describe("Disable Command", () => {
                 expect(result.error).toContain("Invalid tool");
             });
         });
+        describe("plugin takeover integration", () => {
+            it("triggers takeover when disabling a plugin skill", async () => {
+                const spy = vi.spyOn(pluginTakeover, "getAllPluginsForComponent").mockResolvedValue([{
+                        pluginId: "my-plugin@skillsmp",
+                        marketplace: "skillsmp",
+                        plugin: "my-plugin",
+                        version: "1.0.0",
+                        cachePath: "/fake/cache/path",
+                        allSkills: ["superpowers", "bonus-skill"],
+                        enabledSkills: ["superpowers", "bonus-skill"],
+                    }]);
+                const setEnabledSpy = vi.spyOn(pluginTakeover, "setPluginEnabled").mockResolvedValue(undefined);
+                const syncSpy = vi.spyOn(pluginTakeover, "syncPluginSymlinks").mockResolvedValue({ created: ["bonus-skill"], removed: [] });
+                const result = await disableSkillOrMcp({
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                });
+                expect(result.success).toBe(true);
+                expect(result.pluginTakeover).toBe(true);
+                expect(spy).toHaveBeenCalledWith("superpowers");
+                expect(setEnabledSpy).toHaveBeenCalledWith("my-plugin@skillsmp", false);
+                expect(syncSpy).toHaveBeenCalled();
+                // Verify manifest has takenOverPlugins
+                const manifest = yamlParse(await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8"));
+                expect(manifest.takenOverPlugins?.["my-plugin@skillsmp"]).toBeDefined();
+                expect(manifest.skills?.["superpowers"]?.pluginOrigin?.pluginId).toBe("my-plugin@skillsmp");
+                spy.mockRestore();
+                setEnabledSpy.mockRestore();
+                syncSpy.mockRestore();
+            });
+            it("does NOT trigger takeover for non-plugin skills", async () => {
+                const spy = vi.spyOn(pluginTakeover, "getAllPluginsForComponent").mockResolvedValue([]);
+                const result = await disableSkillOrMcp({
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                });
+                expect(result.success).toBe(true);
+                expect(result.pluginTakeover).toBeFalsy();
+                expect(spy).toHaveBeenCalledWith("superpowers");
+                spy.mockRestore();
+            });
+        });
     });
 });
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