@mycelish/cli 0.1.0 → 0.2.0

package/dist/commands/enable.test.js

@@ -2,17 +2,17 @@
  * Tests for enable command module
  * Tests written FIRST following TDD
  */
-import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import * as os from "node:os";
 import { parse as yamlParse, stringify as yamlStringify } from "yaml";
-// Import the module under test (doesn't exist yet - tests will fail)
 import { enableSkillOrMcp, } from "./enable.js";
+import * as pluginTakeover from "../core/plugin-takeover.js";
 describe("Enable Command", () => {
     let tempDir;
     let globalMyceliumPath;
-    // Sample manifest configuration
+    // Sample manifest configuration using state instead of enabled
     const sampleManifest = {
         version: "1.0",
         tools: {
@@ -25,25 +25,34 @@ describe("Enable Command", () => {
         },
         skills: {
             superpowers: {
-                enabled: true,
+                state: "enabled",
             },
             "disabled-skill": {
-                enabled: false,
+                state: "disabled",
+            },
+            "deleted-skill": {
+                state: "deleted",
             },
         },
         mcps: {
             "whark-trading": {
-                enabled: true,
+                state: "enabled",
             },
             "disabled-mcp": {
-                enabled: false,
+                state: "disabled",
+            },
+            "deleted-mcp": {
+                state: "deleted",
+            },
+        },
+        hooks: {
+            "pre-commit": {
+                state: "disabled",
             },
         },
         memory: {
-            scopes: {
-                shared: { sync_to: ["claude-code"], path: "global/memory/shared/", files: [] },
-                coding: { sync_to: ["claude-code"], path: "global/memory/coding/", files: [] },
-                personal: { sync_to: ["openclaw"], path: "global/memory/personal/", files: [] },
+            coding: {
+                state: "disabled",
             },
         },
     };
@@ -69,25 +78,25 @@ describe("Enable Command", () => {
                 const result = await enableSkillOrMcp(options);
                 expect(result.name).toBe("disabled-skill");
             });
-            it("validates name exists in manifest - skill", async () => {
+            it("auto-registers unknown item as skill in manifest", async () => {
                 const options = {
                     name: "non-existent-skill",
                     global: true,
                     globalPath: globalMyceliumPath,
                 };
                 const result = await enableSkillOrMcp(options);
-                expect(result.success).toBe(false);
-                expect(result.error).toContain("not found");
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("skill");
             });
-            it("validates name exists in manifest - MCP", async () => {
+            it("auto-registers unknown MCP as skill in manifest", async () => {
                 const options = {
                     name: "non-existent-mcp",
                     global: true,
                     globalPath: globalMyceliumPath,
                 };
                 const result = await enableSkillOrMcp(options);
-                expect(result.success).toBe(false);
-                expect(result.error).toContain("not found");
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("skill");
             });
         });
         describe("global enabling", () => {
@@ -103,7 +112,7 @@ describe("Enable Command", () => {
                 // Verify manifest was updated
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["disabled-skill"].enabled).toBe(true);
+                expect(updatedManifest.skills["disabled-skill"].state).toBe("enabled");
             });
             it("enables MCP globally", async () => {
                 const options = {
@@ -117,7 +126,7 @@ describe("Enable Command", () => {
                 // Verify manifest was updated
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.mcps["disabled-mcp"].enabled).toBe(true);
+                expect(updatedManifest.mcps["disabled-mcp"].state).toBe("enabled");
             });
         });
         describe("tool-specific enabling", () => {
@@ -168,7 +177,7 @@ describe("Enable Command", () => {
                 await enableSkillOrMcp(options);
                 const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["disabled-skill"].enabled).toBe(true);
+                expect(updatedManifest.skills["disabled-skill"].state).toBe("enabled");
             });
             it("preserves other manifest settings when updating", async () => {
                 const options = {
@@ -182,8 +191,8 @@ describe("Enable Command", () => {
                 // Other settings should be preserved
                 expect(updatedManifest.version).toBe("1.0");
                 expect(updatedManifest.tools["claude-code"].enabled).toBe(true);
-                expect(updatedManifest.skills["superpowers"].enabled).toBe(true);
-                expect(updatedManifest.mcps["whark-trading"].enabled).toBe(true);
+                expect(updatedManifest.skills["superpowers"].state).toBe("enabled");
+                expect(updatedManifest.mcps["whark-trading"].state).toBe("enabled");
             });
         });
         describe("success messages", () => {
@@ -244,6 +253,84 @@ describe("Enable Command", () => {
                 expect(result.alreadyEnabled).toBe(true);
                 expect(result.message).toContain("already enabled");
             });
+            it("treats items with no state as already enabled (default)", async () => {
+                // Write a manifest with a skill that has no state field
+                const noStateManifest = {
+                    version: "1.0",
+                    skills: {
+                        "no-state-skill": {},
+                    },
+                    mcps: {},
+                };
+                const noStatePath = path.join(tempDir, "no-state");
+                await fs.mkdir(noStatePath, { recursive: true });
+                await fs.writeFile(path.join(noStatePath, "manifest.yaml"), yamlStringify(noStateManifest), "utf-8");
+                const result = await enableSkillOrMcp({
+                    name: "no-state-skill",
+                    global: true,
+                    globalPath: noStatePath,
+                });
+                expect(result.success).toBe(true);
+                expect(result.alreadyEnabled).toBe(true);
+            });
+        });
+        describe("deleted item restoration", () => {
+            it("enabling a deleted skill restores it to enabled", async () => {
+                const options = {
+                    name: "deleted-skill",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await enableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("skill");
+                expect(result.alreadyEnabled).toBeUndefined();
+                // Verify manifest was updated
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.skills["deleted-skill"].state).toBe("enabled");
+            });
+            it("enabling a deleted MCP restores it to enabled", async () => {
+                const options = {
+                    name: "deleted-mcp",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await enableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("mcp");
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.mcps["deleted-mcp"].state).toBe("enabled");
+            });
+        });
+        describe("hook and memory enabling", () => {
+            it("enables a hook", async () => {
+                const options = {
+                    name: "pre-commit",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await enableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("hook");
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.hooks["pre-commit"].state).toBe("enabled");
+            });
+            it("enables a memory scope", async () => {
+                const options = {
+                    name: "coding",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await enableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("memory");
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.memory["coding"].state).toBe("enabled");
+            });
         });
         describe("project-level enabling", () => {
             it("enables skill at project level when --global is not set", async () => {
@@ -254,7 +341,7 @@ describe("Enable Command", () => {
                 const projectManifest = {
                     version: "1.0",
                     skills: {
-                        "project-skill": { enabled: false },
+                        "project-skill": { state: "disabled" },
                     },
                     mcps: {},
                 };
@@ -270,7 +357,7 @@ describe("Enable Command", () => {
                 // Verify project manifest was updated
                 const manifestContent = await fs.readFile(path.join(projectPath, "manifest.yaml"), "utf-8");
                 const updatedManifest = yamlParse(manifestContent);
-                expect(updatedManifest.skills["project-skill"].enabled).toBe(true);
+                expect(updatedManifest.skills["project-skill"].state).toBe("enabled");
             });
         });
         describe("error handling", () => {
@@ -296,6 +383,87 @@ describe("Enable Command", () => {
                 expect(result.error).toContain("Invalid tool");
             });
         });
+        describe("plugin release integration", () => {
+            it("triggers release when enabling the last disabled plugin skill", async () => {
+                // Set up manifest with a taken-over plugin where only one skill is disabled
+                const pluginManifest = {
+                    version: "1.0",
+                    skills: {
+                        "cool-skill": {
+                            state: "enabled",
+                            pluginOrigin: { pluginId: "my-plugin@skillsmp", cachePath: "/fake" },
+                        },
+                        "other-skill": {
+                            state: "disabled",
+                            pluginOrigin: { pluginId: "my-plugin@skillsmp", cachePath: "/fake" },
+                        },
+                    },
+                    mcps: {},
+                    takenOverPlugins: {
+                        "my-plugin@skillsmp": {
+                            version: "1.0.0",
+                            cachePath: "/fake",
+                            allSkills: ["cool-skill", "other-skill"],
+                        },
+                    },
+                };
+                await fs.writeFile(path.join(globalMyceliumPath, "manifest.yaml"), yamlStringify(pluginManifest), "utf-8");
+                const setEnabledSpy = vi.spyOn(pluginTakeover, "setPluginEnabled").mockResolvedValue(undefined);
+                const syncSpy = vi.spyOn(pluginTakeover, "syncPluginSymlinks").mockResolvedValue({ created: [], removed: [] });
+                const result = await enableSkillOrMcp({
+                    name: "other-skill",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                });
+                expect(result.success).toBe(true);
+                expect(result.pluginReleased).toBe(true);
+                expect(setEnabledSpy).toHaveBeenCalledWith("my-plugin@skillsmp", true);
+                expect(syncSpy).toHaveBeenCalled();
+                // Verify takenOverPlugins was cleaned up
+                const manifest = yamlParse(await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8"));
+                expect(manifest.takenOverPlugins).toBeUndefined();
+                expect(manifest.skills?.["cool-skill"]?.pluginOrigin).toBeUndefined();
+                setEnabledSpy.mockRestore();
+                syncSpy.mockRestore();
+            });
+            it("does NOT release when some plugin skills are still disabled", async () => {
+                const pluginManifest = {
+                    version: "1.0",
+                    skills: {
+                        "cool-skill": {
+                            state: "disabled",
+                            pluginOrigin: { pluginId: "my-plugin@skillsmp", cachePath: "/fake" },
+                        },
+                        "other-skill": {
+                            state: "disabled",
+                            pluginOrigin: { pluginId: "my-plugin@skillsmp", cachePath: "/fake" },
+                        },
+                    },
+                    mcps: {},
+                    takenOverPlugins: {
+                        "my-plugin@skillsmp": {
+                            version: "1.0.0",
+                            cachePath: "/fake",
+                            allSkills: ["cool-skill", "other-skill"],
+                        },
+                    },
+                };
+                await fs.writeFile(path.join(globalMyceliumPath, "manifest.yaml"), yamlStringify(pluginManifest), "utf-8");
+                const setEnabledSpy = vi.spyOn(pluginTakeover, "setPluginEnabled").mockResolvedValue(undefined);
+                const syncSpy = vi.spyOn(pluginTakeover, "syncPluginSymlinks").mockResolvedValue({ created: [], removed: [] });
+                const result = await enableSkillOrMcp({
+                    name: "cool-skill",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                });
+                expect(result.success).toBe(true);
+                expect(result.pluginReleased).toBeFalsy();
+                // setPluginEnabled should NOT have been called (plugin not released)
+                expect(setEnabledSpy).not.toHaveBeenCalled();
+                setEnabledSpy.mockRestore();
+                syncSpy.mockRestore();
+            });
+        });
     });
 });
 //# sourceMappingURL=enable.test.js.map

package/dist/commands/enable.test.js.map

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package/dist/commands/health-checks/index.d.ts

@@ -1,8 +1,9 @@
 export type { DiagnosticResult, DoctorResult } from "./types.js";
 export { checkGlobalMyceliumExists, checkManifestValid, checkToolPathExists, checkBrokenSymlinks, checkMcpConfigJson, checkMcpConfigYaml, checkOrphanedConfigs, } from "./config-check.js";
-export { checkMcpServerConnectivity } from "./mcp-check.js";
+export { checkMcpServerConnectivity, checkSelfRegistration } from "./mcp-check.js";
 export { checkMemoryFilesExist, checkMemoryFileSize, } from "./memory-check.js";
 export { checkToolVersions } from "./tool-version-check.js";
+export { checkTakenOverPlugins } from "./plugin-takeover-check.js";
 export { runAllChecks } from "./runner.js";
 export { formatDoctorOutput, formatDoctorJson } from "./formatter.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/commands/health-checks/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/health-checks/index.ts"],"names":[],"mappings":"AAAA,YAAY,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AACjE,OAAO,EACL,yBAAyB,EACzB,kBAAkB,EAClB,mBAAmB,EACnB,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,0BAA0B,EAAE,MAAM,gBAAgB,CAAC;AAC5D,OAAO,EACL,qBAAqB,EACrB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/health-checks/index.ts"],"names":[],"mappings":"AAAA,YAAY,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AACjE,OAAO,EACL,yBAAyB,EACzB,kBAAkB,EAClB,mBAAmB,EACnB,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,0BAA0B,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AACnF,OAAO,EACL,qBAAqB,EACrB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/commands/health-checks/index.js

@@ -1,7 +1,8 @@
 export { checkGlobalMyceliumExists, checkManifestValid, checkToolPathExists, checkBrokenSymlinks, checkMcpConfigJson, checkMcpConfigYaml, checkOrphanedConfigs, } from "./config-check.js";
-export { checkMcpServerConnectivity } from "./mcp-check.js";
+export { checkMcpServerConnectivity, checkSelfRegistration } from "./mcp-check.js";
 export { checkMemoryFilesExist, checkMemoryFileSize, } from "./memory-check.js";
 export { checkToolVersions } from "./tool-version-check.js";
+export { checkTakenOverPlugins } from "./plugin-takeover-check.js";
 export { runAllChecks } from "./runner.js";
 export { formatDoctorOutput, formatDoctorJson } from "./formatter.js";
 //# sourceMappingURL=index.js.map

package/dist/commands/health-checks/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/health-checks/index.ts"],"names":[],"mappings":"AACA,OAAO,EACL,yBAAyB,EACzB,kBAAkB,EAClB,mBAAmB,EACnB,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,0BAA0B,EAAE,MAAM,gBAAgB,CAAC;AAC5D,OAAO,EACL,qBAAqB,EACrB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/health-checks/index.ts"],"names":[],"mappings":"AACA,OAAO,EACL,yBAAyB,EACzB,kBAAkB,EAClB,mBAAmB,EACnB,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,0BAA0B,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AACnF,OAAO,EACL,qBAAqB,EACrB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/commands/health-checks/mcp-check.d.ts

@@ -1,9 +1,13 @@
 /**
- * MCP server connectivity checks for doctor command.
+ * MCP server connectivity and self-registration checks for doctor command.
  */
 import type { DiagnosticResult } from "./types.js";
 /**
  * Check if an MCP server command is accessible
  */
 export declare function checkMcpServerConnectivity(command: string, args: string[]): Promise<DiagnosticResult>;
+/**
+ * Check if mycelium is self-registered as an MCP in detected tool configs.
+ */
+export declare function checkSelfRegistration(): Promise<DiagnosticResult[]>;
 //# sourceMappingURL=mcp-check.d.ts.map

package/dist/commands/health-checks/mcp-check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp-check.d.ts","sourceRoot":"","sources":["../../../src/commands/health-checks/mcp-check.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEnD;;GAEG;AACH,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EAAE,GACb,OAAO,CAAC,gBAAgB,CAAC,CA0B3B"}
+{"version":3,"file":"mcp-check.d.ts","sourceRoot":"","sources":["../../../src/commands/health-checks/mcp-check.ts"],"names":[],"mappings":"AAAA;;GAEG;AAMH,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEnD;;GAEG;AACH,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EAAE,GACb,OAAO,CAAC,gBAAgB,CAAC,CA0B3B;AAED;;GAEG;AACH,wBAAsB,qBAAqB,IAAI,OAAO,CAAC,gBAAgB,EAAE,CAAC,CA2BzE"}

package/dist/commands/health-checks/mcp-check.js

@@ -1,8 +1,10 @@
 /**
- * MCP server connectivity checks for doctor command.
+ * MCP server connectivity and self-registration checks for doctor command.
  */
 import { execFile } from "node:child_process";
+import * as fs from "node:fs/promises";
 import { promisify } from "node:util";
+import { TOOL_REGISTRY, resolvePath, pathExists } from "@mycelish/core";
 /**
  * Check if an MCP server command is accessible
  */
@@ -34,4 +36,33 @@ export async function checkMcpServerConnectivity(command, args) {
         };
     }
 }
+/**
+ * Check if mycelium is self-registered as an MCP in detected tool configs.
+ */
+export async function checkSelfRegistration() {
+    const results = [];
+    for (const [toolId, desc] of Object.entries(TOOL_REGISTRY)) {
+        const mcpPath = resolvePath(desc.paths.mcp);
+        if (!mcpPath)
+            continue;
+        if (!(await pathExists(mcpPath)))
+            continue;
+        try {
+            const raw = await fs.readFile(mcpPath, "utf-8");
+            const hasMycelium = raw.includes('"mycelium"') || raw.includes("mycelium:");
+            results.push({
+                name: `MCP Self-Registration (${toolId})`,
+                status: hasMycelium ? "pass" : "warn",
+                message: hasMycelium
+                    ? `Mycelium MCP entry found in ${toolId}`
+                    : `Mycelium MCP entry missing in ${toolId}`,
+                fix: hasMycelium ? undefined : "Run `mycelium init` to register",
+            });
+        }
+        catch {
+            // Can't read config — skip
+        }
+    }
+    return results;
+}
 //# sourceMappingURL=mcp-check.js.map

package/dist/commands/health-checks/mcp-check.js.map

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package/dist/commands/health-checks/plugin-takeover-check.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Health check for taken-over plugins.
+ * Verifies 8 invariants:
+ * 1. Every symlink in ~/.claude/{skills,agents,commands}/ has valid target
+ * 2. Every disabled item with pluginOrigin has NO symlink
+ * 3. Every enabled item with pluginOrigin HAS symlink pointing to plugin cache
+ * 4. Taken-over plugins have enabledPlugins[id] === false in settings.json
+ * 5. Released plugins have enabledPlugins[id] === true
+ * 6. Live cache components match takenOverPlugins entries
+ * 7. No phantom entries (skill name matches pluginId pattern)
+ * 8. No orphaned symlinks (symlinks pointing to non-existent targets)
+ */
+import type { DiagnosticResult } from "./types.js";
+export declare function checkTakenOverPlugins(): Promise<DiagnosticResult[]>;
+//# sourceMappingURL=plugin-takeover-check.d.ts.map

package/dist/commands/health-checks/plugin-takeover-check.d.ts.map

@@ -0,0 +1 @@
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