@medplum/core 0.1.6 → 0.3.0

package/dist/fhir/SubstancePolymer.d.ts

@@ -1,405 +0,0 @@
-import { Attachment } from './Attachment';
-import { CodeableConcept } from './CodeableConcept';
-import { Extension } from './Extension';
-import { Meta } from './Meta';
-import { Narrative } from './Narrative';
-import { Resource } from './Resource';
-import { SubstanceAmount } from './SubstanceAmount';
-/**
- * Todo.
- */
-export interface SubstancePolymer {
-    /**
-     * This is a SubstancePolymer resource
-     */
-    readonly resourceType: 'SubstancePolymer';
-    /**
-     * The logical id of the resource, as used in the URL for the resource.
-     * Once assigned, this value never changes.
-     */
-    readonly id?: string;
-    /**
-     * The metadata about the resource. This is content that is maintained by
-     * the infrastructure. Changes to the content might not always be
-     * associated with version changes to the resource.
-     */
-    readonly meta?: Meta;
-    /**
-     * A reference to a set of rules that were followed when the resource was
-     * constructed, and which must be understood when processing the content.
-     * Often, this is a reference to an implementation guide that defines the
-     * special rules along with other profiles etc.
-     */
-    readonly implicitRules?: string;
-    /**
-     * The base language in which the resource is written.
-     */
-    readonly language?: string;
-    /**
-     * A human-readable narrative that contains a summary of the resource and
-     * can be used to represent the content of the resource to a human. The
-     * narrative need not encode all the structured data, but is required to
-     * contain sufficient detail to make it "clinically safe" for a human to
-     * just read the narrative. Resource definitions may define what content
-     * should be represented in the narrative to ensure clinical safety.
-     */
-    readonly text?: Narrative;
-    /**
-     * These resources do not have an independent existence apart from the
-     * resource that contains them - they cannot be identified independently,
-     * and nor can they have their own independent transaction scope.
-     */
-    readonly contained?: Resource[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource and that modifies the
-     * understanding of the element that contains it and/or the understanding
-     * of the containing element's descendants. Usually modifier elements
-     * provide negation or qualification. To make the use of extensions safe
-     * and manageable, there is a strict set of governance applied to the
-     * definition and use of extensions. Though any implementer is allowed to
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension. Applications processing a
-     * resource are required to check for modifier extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly class?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly geometry?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly copolymerConnectivity?: CodeableConcept[];
-    /**
-     * Todo.
-     */
-    readonly modification?: string[];
-    /**
-     * Todo.
-     */
-    readonly monomerSet?: SubstancePolymerMonomerSet[];
-    /**
-     * Todo.
-     */
-    readonly repeat?: SubstancePolymerRepeat[];
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerDegreeOfPolymerisation {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly degree?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly amount?: SubstanceAmount;
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerMonomerSet {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly ratioType?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly startingMaterial?: SubstancePolymerStartingMaterial[];
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerRepeat {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly numberOfUnits?: number;
-    /**
-     * Todo.
-     */
-    readonly averageMolecularFormula?: string;
-    /**
-     * Todo.
-     */
-    readonly repeatUnitAmountType?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly repeatUnit?: SubstancePolymerRepeatUnit[];
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerRepeatUnit {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly orientationOfPolymerisation?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly repeatUnit?: string;
-    /**
-     * Todo.
-     */
-    readonly amount?: SubstanceAmount;
-    /**
-     * Todo.
-     */
-    readonly degreeOfPolymerisation?: SubstancePolymerDegreeOfPolymerisation[];
-    /**
-     * Todo.
-     */
-    readonly structuralRepresentation?: SubstancePolymerStructuralRepresentation[];
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerStartingMaterial {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly material?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly type?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly isDefining?: boolean;
-    /**
-     * Todo.
-     */
-    readonly amount?: SubstanceAmount;
-}
-/**
- * Todo.
- */
-export interface SubstancePolymerStructuralRepresentation {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Todo.
-     */
-    readonly type?: CodeableConcept;
-    /**
-     * Todo.
-     */
-    readonly representation?: string;
-    /**
-     * Todo.
-     */
-    readonly attachment?: Attachment;
-}

package/dist/fhir/SubstancePolymer.js

@@ -1,7 +0,0 @@
-"use strict";
-/*
- * Generated by @medplum/generator
- * Do not edit manually.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=SubstancePolymer.js.map

package/dist/fhir/SubstancePolymer.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"SubstancePolymer.js","sourceRoot":"","sources":["../../src/fhir/SubstancePolymer.ts"],"names":[],"mappings":";AAAA;;;GAGG"}

package/dist/fhir/SubstanceProtein.d.ts

@@ -1,217 +0,0 @@
-import { Attachment } from './Attachment';
-import { CodeableConcept } from './CodeableConcept';
-import { Extension } from './Extension';
-import { Identifier } from './Identifier';
-import { Meta } from './Meta';
-import { Narrative } from './Narrative';
-import { Resource } from './Resource';
-/**
- * A SubstanceProtein is defined as a single unit of a linear amino acid
- * sequence, or a combination of subunits that are either covalently
- * linked or have a defined invariant stoichiometric relationship. This
- * includes all synthetic, recombinant and purified SubstanceProteins of
- * defined sequence, whether the use is therapeutic or prophylactic. This
- * set of elements will be used to describe albumins, coagulation
- * factors, cytokines, growth factors, peptide/SubstanceProtein hormones,
- * enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.
- */
-export interface SubstanceProtein {
-    /**
-     * This is a SubstanceProtein resource
-     */
-    readonly resourceType: 'SubstanceProtein';
-    /**
-     * The logical id of the resource, as used in the URL for the resource.
-     * Once assigned, this value never changes.
-     */
-    readonly id?: string;
-    /**
-     * The metadata about the resource. This is content that is maintained by
-     * the infrastructure. Changes to the content might not always be
-     * associated with version changes to the resource.
-     */
-    readonly meta?: Meta;
-    /**
-     * A reference to a set of rules that were followed when the resource was
-     * constructed, and which must be understood when processing the content.
-     * Often, this is a reference to an implementation guide that defines the
-     * special rules along with other profiles etc.
-     */
-    readonly implicitRules?: string;
-    /**
-     * The base language in which the resource is written.
-     */
-    readonly language?: string;
-    /**
-     * A human-readable narrative that contains a summary of the resource and
-     * can be used to represent the content of the resource to a human. The
-     * narrative need not encode all the structured data, but is required to
-     * contain sufficient detail to make it "clinically safe" for a human to
-     * just read the narrative. Resource definitions may define what content
-     * should be represented in the narrative to ensure clinical safety.
-     */
-    readonly text?: Narrative;
-    /**
-     * These resources do not have an independent existence apart from the
-     * resource that contains them - they cannot be identified independently,
-     * and nor can they have their own independent transaction scope.
-     */
-    readonly contained?: Resource[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource and that modifies the
-     * understanding of the element that contains it and/or the understanding
-     * of the containing element's descendants. Usually modifier elements
-     * provide negation or qualification. To make the use of extensions safe
-     * and manageable, there is a strict set of governance applied to the
-     * definition and use of extensions. Though any implementer is allowed to
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension. Applications processing a
-     * resource are required to check for modifier extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The SubstanceProtein descriptive elements will only be used when a
-     * complete or partial amino acid sequence is available or derivable from
-     * a nucleic acid sequence.
-     */
-    readonly sequenceType?: CodeableConcept;
-    /**
-     * Number of linear sequences of amino acids linked through peptide
-     * bonds. The number of subunits constituting the SubstanceProtein shall
-     * be described. It is possible that the number of subunits can be
-     * variable.
-     */
-    readonly numberOfSubunits?: number;
-    /**
-     * The disulphide bond between two cysteine residues either on the same
-     * subunit or on two different subunits shall be described. The position
-     * of the disulfide bonds in the SubstanceProtein shall be listed in
-     * increasing order of subunit number and position within subunit
-     * followed by the abbreviation of the amino acids involved. The
-     * disulfide linkage positions shall actually contain the amino acid
-     * Cysteine at the respective positions.
-     */
-    readonly disulfideLinkage?: string[];
-    /**
-     * This subclause refers to the description of each subunit constituting
-     * the SubstanceProtein. A subunit is a linear sequence of amino acids
-     * linked through peptide bonds. The Subunit information shall be
-     * provided when the finished SubstanceProtein is a complex of multiple
-     * sequences; subunits are not used to delineate domains within a single
-     * sequence. Subunits are listed in order of decreasing length; sequences
-     * of the same length will be ordered by decreasing molecular weight;
-     * subunits that have identical sequences will be repeated multiple
-     * times.
-     */
-    readonly subunit?: SubstanceProteinSubunit[];
-}
-/**
- * A SubstanceProtein is defined as a single unit of a linear amino acid
- * sequence, or a combination of subunits that are either covalently
- * linked or have a defined invariant stoichiometric relationship. This
- * includes all synthetic, recombinant and purified SubstanceProteins of
- * defined sequence, whether the use is therapeutic or prophylactic. This
- * set of elements will be used to describe albumins, coagulation
- * factors, cytokines, growth factors, peptide/SubstanceProtein hormones,
- * enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.
- */
-export interface SubstanceProteinSubunit {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Index of primary sequences of amino acids linked through peptide bonds
-     * in order of decreasing length. Sequences of the same length will be
-     * ordered by molecular weight. Subunits that have identical sequences
-     * will be repeated and have sequential subscripts.
-     */
-    readonly subunit?: number;
-    /**
-     * The sequence information shall be provided enumerating the amino acids
-     * from N- to C-terminal end using standard single-letter amino acid
-     * codes. Uppercase shall be used for L-amino acids and lowercase for
-     * D-amino acids. Transcribed SubstanceProteins will always be described
-     * using the translated sequence; for synthetic peptide containing amino
-     * acids that are not represented with a single letter code an X should
-     * be used within the sequence. The modified amino acids will be
-     * distinguished by their position in the sequence.
-     */
-    readonly sequence?: string;
-    /**
-     * Length of linear sequences of amino acids contained in the subunit.
-     */
-    readonly length?: number;
-    /**
-     * The sequence information shall be provided enumerating the amino acids
-     * from N- to C-terminal end using standard single-letter amino acid
-     * codes. Uppercase shall be used for L-amino acids and lowercase for
-     * D-amino acids. Transcribed SubstanceProteins will always be described
-     * using the translated sequence; for synthetic peptide containing amino
-     * acids that are not represented with a single letter code an X should
-     * be used within the sequence. The modified amino acids will be
-     * distinguished by their position in the sequence.
-     */
-    readonly sequenceAttachment?: Attachment;
-    /**
-     * Unique identifier for molecular fragment modification based on the ISO
-     * 11238 Substance ID.
-     */
-    readonly nTerminalModificationId?: Identifier;
-    /**
-     * The name of the fragment modified at the N-terminal of the
-     * SubstanceProtein shall be specified.
-     */
-    readonly nTerminalModification?: string;
-    /**
-     * Unique identifier for molecular fragment modification based on the ISO
-     * 11238 Substance ID.
-     */
-    readonly cTerminalModificationId?: Identifier;
-    /**
-     * The modification at the C-terminal shall be specified.
-     */
-    readonly cTerminalModification?: string;
-}

package/dist/fhir/SubstanceProtein.js

@@ -1,7 +0,0 @@
-"use strict";
-/*
- * Generated by @medplum/generator
- * Do not edit manually.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=SubstanceProtein.js.map

package/dist/fhir/SubstanceProtein.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"SubstanceProtein.js","sourceRoot":"","sources":["../../src/fhir/SubstanceProtein.ts"],"names":[],"mappings":";AAAA;;;GAGG"}