@medplum/core 0.1.6 → 0.3.0

package/dist/fhir/SubstanceNucleicAcid.d.ts

@@ -1,316 +0,0 @@
-import { Attachment } from './Attachment';
-import { CodeableConcept } from './CodeableConcept';
-import { Extension } from './Extension';
-import { Identifier } from './Identifier';
-import { Meta } from './Meta';
-import { Narrative } from './Narrative';
-import { Resource } from './Resource';
-/**
- * Nucleic acids are defined by three distinct elements: the base, sugar
- * and linkage. Individual substance/moiety IDs will be created for each
- * of these elements. The nucleotide sequence will be always entered in
- * the 5’-3’ direction.
- */
-export interface SubstanceNucleicAcid {
-    /**
-     * This is a SubstanceNucleicAcid resource
-     */
-    readonly resourceType: 'SubstanceNucleicAcid';
-    /**
-     * The logical id of the resource, as used in the URL for the resource.
-     * Once assigned, this value never changes.
-     */
-    readonly id?: string;
-    /**
-     * The metadata about the resource. This is content that is maintained by
-     * the infrastructure. Changes to the content might not always be
-     * associated with version changes to the resource.
-     */
-    readonly meta?: Meta;
-    /**
-     * A reference to a set of rules that were followed when the resource was
-     * constructed, and which must be understood when processing the content.
-     * Often, this is a reference to an implementation guide that defines the
-     * special rules along with other profiles etc.
-     */
-    readonly implicitRules?: string;
-    /**
-     * The base language in which the resource is written.
-     */
-    readonly language?: string;
-    /**
-     * A human-readable narrative that contains a summary of the resource and
-     * can be used to represent the content of the resource to a human. The
-     * narrative need not encode all the structured data, but is required to
-     * contain sufficient detail to make it "clinically safe" for a human to
-     * just read the narrative. Resource definitions may define what content
-     * should be represented in the narrative to ensure clinical safety.
-     */
-    readonly text?: Narrative;
-    /**
-     * These resources do not have an independent existence apart from the
-     * resource that contains them - they cannot be identified independently,
-     * and nor can they have their own independent transaction scope.
-     */
-    readonly contained?: Resource[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource and that modifies the
-     * understanding of the element that contains it and/or the understanding
-     * of the containing element's descendants. Usually modifier elements
-     * provide negation or qualification. To make the use of extensions safe
-     * and manageable, there is a strict set of governance applied to the
-     * definition and use of extensions. Though any implementer is allowed to
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension. Applications processing a
-     * resource are required to check for modifier extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The type of the sequence shall be specified based on a controlled
-     * vocabulary.
-     */
-    readonly sequenceType?: CodeableConcept;
-    /**
-     * The number of linear sequences of nucleotides linked through
-     * phosphodiester bonds shall be described. Subunits would be strands of
-     * nucleic acids that are tightly associated typically through
-     * Watson-Crick base pairing. NOTE: If not specified in the reference
-     * source, the assumption is that there is 1 subunit.
-     */
-    readonly numberOfSubunits?: number;
-    /**
-     * The area of hybridisation shall be described if applicable for double
-     * stranded RNA or DNA. The number associated with the subunit followed
-     * by the number associated to the residue shall be specified in
-     * increasing order. The underscore “” shall be used as separator as
-     * follows: “Subunitnumber Residue”.
-     */
-    readonly areaOfHybridisation?: string;
-    /**
-     * (TBC).
-     */
-    readonly oligoNucleotideType?: CodeableConcept;
-    /**
-     * Subunits are listed in order of decreasing length; sequences of the
-     * same length will be ordered by molecular weight; subunits that have
-     * identical sequences will be repeated multiple times.
-     */
-    readonly subunit?: SubstanceNucleicAcidSubunit[];
-}
-/**
- * Nucleic acids are defined by three distinct elements: the base, sugar
- * and linkage. Individual substance/moiety IDs will be created for each
- * of these elements. The nucleotide sequence will be always entered in
- * the 5’-3’ direction.
- */
-export interface SubstanceNucleicAcidLinkage {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The entity that links the sugar residues together should also be
-     * captured for nearly all naturally occurring nucleic acid the linkage
-     * is a phosphate group. For many synthetic oligonucleotides
-     * phosphorothioate linkages are often seen. Linkage connectivity is
-     * assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this
-     * should be specified.
-     */
-    readonly connectivity?: string;
-    /**
-     * Each linkage will be registered as a fragment and have an ID.
-     */
-    readonly identifier?: Identifier;
-    /**
-     * Each linkage will be registered as a fragment and have at least one
-     * name. A single name shall be assigned to each linkage.
-     */
-    readonly name?: string;
-    /**
-     * Residues shall be captured as described in 5.3.6.8.3.
-     */
-    readonly residueSite?: string;
-}
-/**
- * Nucleic acids are defined by three distinct elements: the base, sugar
- * and linkage. Individual substance/moiety IDs will be created for each
- * of these elements. The nucleotide sequence will be always entered in
- * the 5’-3’ direction.
- */
-export interface SubstanceNucleicAcidSubunit {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Index of linear sequences of nucleic acids in order of decreasing
-     * length. Sequences of the same length will be ordered by molecular
-     * weight. Subunits that have identical sequences will be repeated and
-     * have sequential subscripts.
-     */
-    readonly subunit?: number;
-    /**
-     * Actual nucleotide sequence notation from 5' to 3' end using standard
-     * single letter codes. In addition to the base sequence, sugar and type
-     * of phosphate or non-phosphate linkage should also be captured.
-     */
-    readonly sequence?: string;
-    /**
-     * The length of the sequence shall be captured.
-     */
-    readonly length?: number;
-    /**
-     * (TBC).
-     */
-    readonly sequenceAttachment?: Attachment;
-    /**
-     * The nucleotide present at the 5’ terminal shall be specified based on
-     * a controlled vocabulary. Since the sequence is represented from the 5'
-     * to the 3' end, the 5’ prime nucleotide is the letter at the first
-     * position in the sequence. A separate representation would be
-     * redundant.
-     */
-    readonly fivePrime?: CodeableConcept;
-    /**
-     * The nucleotide present at the 3’ terminal shall be specified based on
-     * a controlled vocabulary. Since the sequence is represented from the 5'
-     * to the 3' end, the 5’ prime nucleotide is the letter at the last
-     * position in the sequence. A separate representation would be
-     * redundant.
-     */
-    readonly threePrime?: CodeableConcept;
-    /**
-     * The linkages between sugar residues will also be captured.
-     */
-    readonly linkage?: SubstanceNucleicAcidLinkage[];
-    /**
-     * 5.3.6.8.1 Sugar ID (Mandatory).
-     */
-    readonly sugar?: SubstanceNucleicAcidSugar[];
-}
-/**
- * Nucleic acids are defined by three distinct elements: the base, sugar
- * and linkage. Individual substance/moiety IDs will be created for each
- * of these elements. The nucleotide sequence will be always entered in
- * the 5’-3’ direction.
- */
-export interface SubstanceNucleicAcidSugar {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The Substance ID of the sugar or sugar-like component that make up the
-     * nucleotide.
-     */
-    readonly identifier?: Identifier;
-    /**
-     * The name of the sugar or sugar-like component that make up the
-     * nucleotide.
-     */
-    readonly name?: string;
-    /**
-     * The residues that contain a given sugar will be captured. The order of
-     * given residues will be captured in the 5‘-3‘direction consistent with
-     * the base sequences listed above.
-     */
-    readonly residueSite?: string;
-}

package/dist/fhir/SubstanceNucleicAcid.js

@@ -1,7 +0,0 @@
-"use strict";
-/*
- * Generated by @medplum/generator
- * Do not edit manually.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=SubstanceNucleicAcid.js.map

package/dist/fhir/SubstanceNucleicAcid.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"SubstanceNucleicAcid.js","sourceRoot":"","sources":["../../src/fhir/SubstanceNucleicAcid.ts"],"names":[],"mappings":";AAAA;;;GAGG"}