@medplum/core 0.1.6 → 0.3.0

package/dist/fhirpath/parse.js

@@ -1,285 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseFhirPath = exports.FhirPathAtom = void 0;
-const functions_1 = require("./functions");
-const tokenize_1 = require("./tokenize");
-const utils_1 = require("./utils");
-class ParserBuilder {
-    prefixParselets = {};
-    infixParselets = {};
-    registerInfix(tokenType, parselet) {
-        this.infixParselets[tokenType] = parselet;
-        return this;
-    }
-    registerPrefix(tokenType, parselet) {
-        this.prefixParselets[tokenType] = parselet;
-        return this;
-    }
-    prefix(tokenType, precedence, builder) {
-        return this.registerPrefix(tokenType, {
-            parse(parser, token) {
-                const right = parser.parse(precedence);
-                return builder(token, right);
-            },
-        });
-    }
-    infixLeft(tokenType, precedence, builder) {
-        return this.registerInfix(tokenType, {
-            parse(parser, left, token) {
-                const right = parser.parse(precedence);
-                return builder(left, token, right);
-            },
-            precedence
-        });
-    }
-    infixRight(tokenType, precedence, builder) {
-        return this.registerInfix(tokenType, {
-            parse(parser, left, token) {
-                const right = parser.parse(precedence - 1);
-                return builder(left, token, right);
-            },
-            precedence
-        });
-    }
-    construct(input) {
-        return new Parser(tokenize_1.tokenizer.tokenize(input), this.prefixParselets, this.infixParselets);
-    }
-}
-class Parser {
-    tokens;
-    prefixParselets;
-    infixParselets;
-    constructor(tokens, prefixParselets, infixParselets) {
-        this.tokens = tokens;
-        this.prefixParselets = prefixParselets;
-        this.infixParselets = infixParselets;
-    }
-    match(expected) {
-        const token = this.look();
-        if (token?.id !== expected) {
-            return false;
-        }
-        this.consume();
-        return true;
-    }
-    parse(precedence = 0) {
-        const token = this.consume();
-        const prefix = this.prefixParselets[token.id];
-        if (!prefix) {
-            throw Error(`Parse error at ${token.value}. No matching prefix parselet.`);
-        }
-        let left = prefix.parse(this, token);
-        while (precedence < this.getPrecedence()) {
-            const next = this.consume();
-            const infix = this.infixParselets[next.id];
-            left = infix.parse(this, left, next);
-        }
-        return left;
-    }
-    getPrecedence() {
-        const nextToken = this.look();
-        if (!nextToken) {
-            return 0;
-        }
-        const parser = this.infixParselets[nextToken.id];
-        if (parser) {
-            return parser.precedence;
-        }
-        return 0;
-    }
-    consume() {
-        if (!this.tokens.length) {
-            throw Error('Cant consume any more tokens.');
-        }
-        return this.tokens.shift();
-    }
-    look() {
-        return this.tokens.length > 0 ? this.tokens[0] : undefined;
-    }
-}
-class FhirPathAtom {
-    original;
-    child;
-    constructor(original, child) {
-        this.original = original;
-        this.child = child;
-    }
-    eval(context) {
-        try {
-            const result = (0, utils_1.applyMaybeArray)(context, e => this.child.eval(e));
-            if (Array.isArray(result)) {
-                return result.flat();
-            }
-            else if (result === undefined || result === null) {
-                return [];
-            }
-            else {
-                return [result];
-            }
-        }
-        catch (error) {
-            throw new Error(`FhirPathError on "${this.original}": ${error}`);
-        }
-    }
-}
-exports.FhirPathAtom = FhirPathAtom;
-class LiteralAtom {
-    value;
-    constructor(value) {
-        this.value = value;
-    }
-    eval() {
-        return this.value;
-    }
-}
-class SymbolAtom {
-    name;
-    constructor(name) {
-        this.name = name;
-    }
-    eval(context) {
-        return (0, utils_1.applyMaybeArray)(context, e => e.resourceType === this.name ? e : e[this.name]);
-    }
-}
-class UnaryOperatorAtom {
-    child;
-    impl;
-    constructor(child, impl) {
-        this.child = child;
-        this.impl = impl;
-    }
-    eval(context) {
-        return this.impl(this.child.eval(context));
-    }
-}
-class BinaryOperatorAtom {
-    left;
-    right;
-    impl;
-    constructor(left, right, impl) {
-        this.left = left;
-        this.right = right;
-        this.impl = impl;
-    }
-    eval(context) {
-        return this.impl(this.left.eval(context), this.right.eval(context));
-    }
-}
-class DotAtom {
-    left;
-    right;
-    constructor(left, right) {
-        this.left = left;
-        this.right = right;
-    }
-    eval(context) {
-        return this.right.eval(this.left.eval(context));
-    }
-}
-class UnionAtom {
-    left;
-    right;
-    constructor(left, right) {
-        this.left = left;
-        this.right = right;
-    }
-    eval(context) {
-        const leftResult = this.left.eval(context);
-        const rightResult = this.right.eval(context);
-        if (leftResult && rightResult) {
-            return [leftResult, rightResult].flat();
-        }
-        return leftResult || rightResult;
-    }
-}
-class IsAtom {
-    left;
-    right;
-    constructor(left, right) {
-        this.left = left;
-        this.right = right;
-    }
-    eval(context) {
-        const desiredResourceType = this.right.name;
-        return (0, utils_1.applyMaybeArray)(this.left.eval(context), e => e?.resourceType === desiredResourceType ? e : undefined);
-    }
-}
-class FunctionAtom {
-    name;
-    args;
-    impl;
-    constructor(name, args, impl) {
-        this.name = name;
-        this.args = args;
-        this.impl = impl;
-    }
-    eval(context) {
-        if (context === undefined) {
-            return undefined;
-        }
-        const input = Array.isArray(context) ? context : [context];
-        return this.impl(input, ...this.args);
-    }
-}
-const PARENTHESES_PARSELET = {
-    parse(parser) {
-        const expr = parser.parse();
-        if (!parser.match(')')) {
-            throw new Error('Parse error: expected `)`');
-        }
-        return expr;
-    }
-};
-const FUNCTION_CALL_PARSELET = {
-    parse(parser, left) {
-        if (!(left instanceof SymbolAtom)) {
-            throw new Error('Unexpected parentheses');
-        }
-        if (!(left.name in functions_1.functions)) {
-            throw new Error('Unrecognized function: ' + left.name);
-        }
-        const args = [];
-        while (!parser.match(')')) {
-            args.push(parser.parse());
-        }
-        return new FunctionAtom(left.name, args, functions_1.functions[left.name]);
-    },
-    precedence: 8 /* FunctionCall */
-};
-const parserBuilder = new ParserBuilder()
-    .registerPrefix('StringLiteral', { parse: (_, token) => new LiteralAtom(token.value.substring(1, token.value.length - 1)) })
-    .registerPrefix('Number', { parse: (_, token) => new LiteralAtom(parseFloat(token.value)) })
-    .registerPrefix('Symbol', { parse: (_, token) => new SymbolAtom(token.value) })
-    .registerPrefix('(', PARENTHESES_PARSELET)
-    .registerInfix('(', FUNCTION_CALL_PARSELET)
-    .prefix('-', 6 /* Negate */, (_, right) => new UnaryOperatorAtom(right, x => -x))
-    .infixLeft('.', 7 /* Dot */, (left, _, right) => new DotAtom(left, right))
-    .infixRight('^', 5 /* Exp */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x ** y))
-    .infixLeft('/', 4 /* MulDiv */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x / y))
-    .infixLeft('*', 4 /* MulDiv */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x * y))
-    .infixLeft('+', 3 /* AddSub */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x + y))
-    .infixLeft('-', 3 /* AddSub */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x - y))
-    .infixLeft('|', 1 /* Union */, (left, _, right) => new UnionAtom(left, right))
-    .infixLeft('=', 2 /* Equals */, (left, _, right) => new BinaryOperatorAtom(left, right, (x, y) => x === y))
-    .infixLeft('Symbol', 1 /* Union */, (left, symbol, right) => {
-    switch (symbol.value) {
-        case 'as':
-            return new BinaryOperatorAtom(left, right, (x) => x);
-        case 'is':
-            return new IsAtom(left, right);
-        case 'and':
-            return new BinaryOperatorAtom(left, right, (x, y) => x && y);
-        default:
-            throw new Error('Cannot use ' + symbol.value + ' as infix operator');
-    }
-});
-function parseFhirPath(input) {
-    try {
-        return new FhirPathAtom(input, parserBuilder.construct(input).parse());
-    }
-    catch (error) {
-        throw new Error(`FhirPathError on "${input}": ${error}`);
-    }
-}
-exports.parseFhirPath = parseFhirPath;
-//# sourceMappingURL=parse.js.map

package/dist/fhirpath/parse.js.map

@@ -1 +0,0 @@
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package/dist/fhirpath/parse.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/fhirpath/parse.test.js

@@ -1,239 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const definitions_1 = require("@medplum/definitions");
-const parse_1 = require("./parse");
-test('Parser can build a arithmetic parser with correct order of operations', () => {
-    const result = (0, parse_1.parseFhirPath)('3 / 3 + 4 * 3 ^ 2 - 1').eval(0);
-    expect(result).toEqual([36]);
-});
-test('Parser can build a arithmetic parser with parentheses', () => {
-    const result = (0, parse_1.parseFhirPath)('3 / 3 + 4 * (3 ^ (2 - 1))').eval(0);
-    expect(result).toEqual([13]);
-});
-test('Parser can build a arithmetic parser with correct associativity', () => {
-    const result = (0, parse_1.parseFhirPath)('5 - 4 - 3 - 2 - 1 + 2 ^ 3 ^ 2').eval(0);
-    expect(result).toEqual([507]);
-});
-test('Parser can build an arithmetic parser with prefix operators', () => {
-    const result = (0, parse_1.parseFhirPath)('-4 + -(4 + 5 - -4)').eval(0);
-    expect(result).toEqual([-17]);
-});
-test('Parser throws on missing closing parentheses', () => {
-    expect(() => (0, parse_1.parseFhirPath)('(2 + 1')).toThrowError('Parse error: expected `)`');
-});
-test('Parser throws on unexpected symbol', () => {
-    expect(() => (0, parse_1.parseFhirPath)('*')).toThrowError('Parse error at *. No matching prefix parselet.');
-});
-test('Parser throws on missing tokens', () => {
-    expect(() => (0, parse_1.parseFhirPath)('1 * ')).toThrowError('Cant consume any more tokens.');
-});
-test('Evaluate FHIRPath Patient.name.given on empty resource', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given').eval({});
-    expect(result).toEqual([]);
-});
-test('Evaluate FHIRPath Patient.name.given', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given').eval({
-        resourceType: 'Patient',
-        name: [{
-                given: ['Alice'],
-                family: 'Smith'
-            }]
-    });
-    expect(result).toEqual(['Alice']);
-});
-test('Evaluate FHIRPath string concatenation', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given + \' \' + Patient.name.family').eval({
-        resourceType: 'Patient',
-        name: [{
-                given: ['Alice'],
-                family: 'Smith'
-            }]
-    });
-    expect(result).toEqual(['Alice Smith']);
-});
-test('Evaluate FHIRPath Patient.name.given on array of resources', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given').eval([{
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Alice'],
-                    family: 'Smith'
-                }]
-        },
-        {
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Bob'],
-                    family: 'Jones'
-                }]
-        }]);
-    expect(result).toEqual(['Alice', 'Bob']);
-});
-test('Evaluate FHIRPath string concatenation on array of resources', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given + \' \' + Patient.name.family').eval([{
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Alice'],
-                    family: 'Smith'
-                }]
-        },
-        {
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Bob'],
-                    family: 'Jones'
-                }]
-        }]);
-    expect(result).toEqual(['Alice Smith', 'Bob Jones']);
-});
-test('Evaluate FHIRPath Patient.name.given on array of resources', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given').eval([{
-            resourceType: 'Practitioner',
-            name: [{
-                    given: ['Alice'],
-                    family: 'Smith'
-                }]
-        },
-        {
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Bob'],
-                    family: 'Jones'
-                }]
-        }]);
-    expect(result).toEqual(['Bob']);
-});
-test('Evaluate FHIRPath union', () => {
-    const result = (0, parse_1.parseFhirPath)('Practitioner.name.given | Patient.name.given').eval({
-        resourceType: 'Patient',
-        name: [{
-                given: ['Alice'],
-                family: 'Smith'
-            }]
-    });
-    expect(result).toEqual(['Alice']);
-});
-test('Evaluate FHIRPath union to combine results', () => {
-    const result = (0, parse_1.parseFhirPath)('Practitioner.name.given | Patient.name.given').eval([{
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Alice'],
-                    family: 'Smith'
-                }]
-        },
-        {
-            resourceType: 'Practitioner',
-            name: [{
-                    given: ['Bob'],
-                    family: 'Jones'
-                }]
-        }]);
-    expect(result).toEqual(['Alice', 'Bob']);
-});
-test('Evaluate FHIRPath double union', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.name.given | Patient.name.given').eval([{
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Alice'],
-                    family: 'Smith'
-                }]
-        },
-        {
-            resourceType: 'Patient',
-            name: [{
-                    given: ['Bob'],
-                    family: 'Jones'
-                }]
-        }]);
-    expect(result).toEqual(['Alice', 'Alice', 'Bob', 'Bob']);
-});
-test('Evaluate ignores non-objects', () => {
-    const result = (0, parse_1.parseFhirPath)('foo.bar').eval({
-        foo: 1
-    });
-    expect(result).toEqual([]);
-});
-test('Evaluate fails on function parentheses after non-symbol', () => {
-    expect(() => (0, parse_1.parseFhirPath)('1()').eval(0)).toThrowError('Unexpected parentheses');
-});
-test('Evaluate fails on unrecognized function', () => {
-    expect(() => (0, parse_1.parseFhirPath)('asdf()').eval(0)).toThrowError('Unrecognized function');
-});
-test('Evaluate FHIRPath where function', () => {
-    const result = (0, parse_1.parseFhirPath)('Patient.telecom.where(system=\'email\')').eval({
-        resourceType: 'Patient',
-        name: [{
-                given: ['Alice'],
-                family: 'Smith'
-            }],
-        telecom: [
-            {
-                system: 'a',
-                value: 'a'
-            },
-            {
-                system: 'b',
-                value: 'b'
-            },
-            {
-                system: 'email',
-                value: 'alice@example.com'
-            },
-            {
-                system: 'c',
-                value: 'c'
-            },
-        ]
-    });
-    expect(result).toMatchObject([{
-            system: 'email',
-            value: 'alice@example.com'
-        }]);
-});
-test('Eval all SearchParameter expressions', () => {
-    const searchParams = (0, definitions_1.readJson)('fhir/r4/search-parameters.json');
-    for (const entry of searchParams.entry) {
-        const resource = entry.resource;
-        const { expression } = resource;
-        if (expression) {
-            expect(() => (0, parse_1.parseFhirPath)((expression))).not.toThrow();
-        }
-    }
-});
-test('Eval FHIRPath resolve function', () => {
-    const observation = {
-        resourceType: 'Observation',
-        subject: {
-            reference: 'Patient/123'
-        }
-    };
-    const result = (0, parse_1.parseFhirPath)('Observation.subject.resolve()').eval(observation);
-    expect(result).toMatchObject([{
-            resourceType: 'Patient',
-            id: '123'
-        }]);
-});
-test('Resolve is resourceType', () => {
-    const auditEvent = {
-        resourceType: 'AuditEvent',
-        entity: [{
-                what: {
-                    reference: 'Patient/123'
-                }
-            }]
-    };
-    const result = (0, parse_1.parseFhirPath)('AuditEvent.entity.what.where(resolve() is Patient)').eval(auditEvent);
-    expect(result).toEqual([{ reference: 'Patient/123' }]);
-});
-test('Resolve is not resourceType', () => {
-    const auditEvent = {
-        resourceType: 'AuditEvent',
-        entity: [{
-                what: {
-                    reference: 'Subscription/123'
-                }
-            }]
-    };
-    const result = (0, parse_1.parseFhirPath)('AuditEvent.entity.what.where(resolve() is Patient)').eval(auditEvent);
-    expect(result).toEqual([]);
-});
-//# sourceMappingURL=parse.test.js.map

package/dist/fhirpath/parse.test.js.map

@@ -1 +0,0 @@
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package/dist/fhirpath/tokenize.d.ts

@@ -1,13 +0,0 @@
-export interface TokenMatcher {
-    id: string;
-    pattern: RegExp;
-}
-export interface Token extends TokenMatcher {
-    value: string;
-}
-export declare class Tokenizer {
-    private matchAll;
-    constructor();
-    tokenize(str: string): Token[];
-}
-export declare const tokenizer: Tokenizer;

package/dist/fhirpath/tokenize.js

@@ -1,43 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.tokenizer = exports.Tokenizer = void 0;
-const matchers = [
-    { id: 'Comment', pattern: /\/\/.*$/ },
-    { id: 'StringLiteral', pattern: /'[^']*'/ },
-    { id: '(', pattern: /\(/ },
-    { id: ')', pattern: /\)/ },
-    { id: '*', pattern: /\*/ },
-    { id: '/', pattern: /\// },
-    { id: '+', pattern: /\+/ },
-    { id: '-', pattern: /-/ },
-    { id: '^', pattern: /\^/ },
-    { id: '!', pattern: /!/ },
-    { id: '.', pattern: /\./ },
-    { id: '|', pattern: /\|/ },
-    { id: '=', pattern: /=/ },
-    { id: 'Number', pattern: /\d+/ },
-    { id: 'Symbol', pattern: /\w+/ },
-];
-class Tokenizer {
-    matchAll;
-    constructor() {
-        this.matchAll = new RegExp(matchers.map(matcher => matcher.pattern.source).join('|'), 'g');
-    }
-    tokenize(str) {
-        // Double-execing the RegExp is actually not that slow. Faster than my attempted alternative implementation.
-        // https://jsperf.com/tokenization-strategies-jkearl-pratt/1
-        const tokens = str.match(this.matchAll);
-        if (!tokens) {
-            throw new Error('Could not tokenize');
-        }
-        return tokens.map(value => {
-            return {
-                ...matchers.find(matcher => matcher.pattern.test(value)),
-                value
-            };
-        });
-    }
-}
-exports.Tokenizer = Tokenizer;
-exports.tokenizer = new Tokenizer();
-//# sourceMappingURL=tokenize.js.map

package/dist/fhirpath/tokenize.js.map

@@ -1 +0,0 @@
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package/dist/fhirpath/tokenize.test.d.ts

@@ -1 +0,0 @@
-export {};