@medplum/core 0.1.6 → 0.3.0

package/dist/fhir/SubstanceSourceMaterial.d.ts

@@ -1,594 +0,0 @@
-import { CodeableConcept } from './CodeableConcept';
-import { Extension } from './Extension';
-import { Identifier } from './Identifier';
-import { Meta } from './Meta';
-import { Narrative } from './Narrative';
-import { Resource } from './Resource';
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterial {
-    /**
-     * This is a SubstanceSourceMaterial resource
-     */
-    readonly resourceType: 'SubstanceSourceMaterial';
-    /**
-     * The logical id of the resource, as used in the URL for the resource.
-     * Once assigned, this value never changes.
-     */
-    readonly id?: string;
-    /**
-     * The metadata about the resource. This is content that is maintained by
-     * the infrastructure. Changes to the content might not always be
-     * associated with version changes to the resource.
-     */
-    readonly meta?: Meta;
-    /**
-     * A reference to a set of rules that were followed when the resource was
-     * constructed, and which must be understood when processing the content.
-     * Often, this is a reference to an implementation guide that defines the
-     * special rules along with other profiles etc.
-     */
-    readonly implicitRules?: string;
-    /**
-     * The base language in which the resource is written.
-     */
-    readonly language?: string;
-    /**
-     * A human-readable narrative that contains a summary of the resource and
-     * can be used to represent the content of the resource to a human. The
-     * narrative need not encode all the structured data, but is required to
-     * contain sufficient detail to make it "clinically safe" for a human to
-     * just read the narrative. Resource definitions may define what content
-     * should be represented in the narrative to ensure clinical safety.
-     */
-    readonly text?: Narrative;
-    /**
-     * These resources do not have an independent existence apart from the
-     * resource that contains them - they cannot be identified independently,
-     * and nor can they have their own independent transaction scope.
-     */
-    readonly contained?: Resource[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the resource and that modifies the
-     * understanding of the element that contains it and/or the understanding
-     * of the containing element's descendants. Usually modifier elements
-     * provide negation or qualification. To make the use of extensions safe
-     * and manageable, there is a strict set of governance applied to the
-     * definition and use of extensions. Though any implementer is allowed to
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension. Applications processing a
-     * resource are required to check for modifier extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * General high level classification of the source material specific to
-     * the origin of the material.
-     */
-    readonly sourceMaterialClass?: CodeableConcept;
-    /**
-     * The type of the source material shall be specified based on a
-     * controlled vocabulary. For vaccines, this subclause refers to the
-     * class of infectious agent.
-     */
-    readonly sourceMaterialType?: CodeableConcept;
-    /**
-     * The state of the source material when extracted.
-     */
-    readonly sourceMaterialState?: CodeableConcept;
-    /**
-     * The unique identifier associated with the source material parent
-     * organism shall be specified.
-     */
-    readonly organismId?: Identifier;
-    /**
-     * The organism accepted Scientific name shall be provided based on the
-     * organism taxonomy.
-     */
-    readonly organismName?: string;
-    /**
-     * The parent of the herbal drug Ginkgo biloba, Leaf is the substance ID
-     * of the substance (fresh) of Ginkgo biloba L. or Ginkgo biloba L.
-     * (Whole plant).
-     */
-    readonly parentSubstanceId?: Identifier[];
-    /**
-     * The parent substance of the Herbal Drug, or Herbal preparation.
-     */
-    readonly parentSubstanceName?: string[];
-    /**
-     * The country where the plant material is harvested or the countries
-     * where the plasma is sourced from as laid down in accordance with the
-     * Plasma Master File. For “Plasma-derived substances” the attribute
-     * country of origin provides information about the countries used for
-     * the manufacturing of the Cryopoor plama or Crioprecipitate.
-     */
-    readonly countryOfOrigin?: CodeableConcept[];
-    /**
-     * The place/region where the plant is harvested or the places/regions
-     * where the animal source material has its habitat.
-     */
-    readonly geographicalLocation?: string[];
-    /**
-     * Stage of life for animals, plants, insects and microorganisms. This
-     * information shall be provided only when the substance is significantly
-     * different in these stages (e.g. foetal bovine serum).
-     */
-    readonly developmentStage?: CodeableConcept;
-    /**
-     * Many complex materials are fractions of parts of plants, animals, or
-     * minerals. Fraction elements are often necessary to define both
-     * Substances and Specified Group 1 Substances. For substances derived
-     * from Plants, fraction information will be captured at the Substance
-     * information level ( . Oils, Juices and Exudates). Additional
-     * information for Extracts, such as extraction solvent composition, will
-     * be captured at the Specified Substance Group 1 information level. For
-     * plasma-derived products fraction information will be captured at the
-     * Substance and the Specified Substance Group 1 levels.
-     */
-    readonly fractionDescription?: SubstanceSourceMaterialFractionDescription[];
-    /**
-     * This subclause describes the organism which the substance is derived
-     * from. For vaccines, the parent organism shall be specified based on
-     * these subclause elements. As an example, full taxonomy will be
-     * described for the Substance Name: ., Leaf.
-     */
-    readonly organism?: SubstanceSourceMaterialOrganism;
-    /**
-     * To do.
-     */
-    readonly partDescription?: SubstanceSourceMaterialPartDescription[];
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialAuthor {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The type of author of an organism species shall be specified. The
-     * parenthetical author of an organism species refers to the first author
-     * who published the plant/animal name (of any rank). The primary author
-     * of an organism species refers to the first author(s), who validly
-     * published the plant/animal name.
-     */
-    readonly authorType?: CodeableConcept;
-    /**
-     * The author of an organism species shall be specified. The author year
-     * of an organism shall also be specified when applicable; refers to the
-     * year in which the first author(s) published the infraspecific
-     * plant/animal name (of any rank).
-     */
-    readonly authorDescription?: string;
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialFractionDescription {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * This element is capturing information about the fraction of a plant
-     * part, or human plasma for fractionation.
-     */
-    readonly fraction?: string;
-    /**
-     * The specific type of the material constituting the component. For
-     * Herbal preparations the particulars of the extracts (liquid/dry) is
-     * described in Specified Substance Group 1.
-     */
-    readonly materialType?: CodeableConcept;
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialHybrid {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The identifier of the maternal species constituting the hybrid
-     * organism shall be specified based on a controlled vocabulary. For
-     * plants, the parents aren’t always known, and it is unlikely that it
-     * will be known which is maternal and which is paternal.
-     */
-    readonly maternalOrganismId?: string;
-    /**
-     * The name of the maternal species constituting the hybrid organism
-     * shall be specified. For plants, the parents aren’t always known, and
-     * it is unlikely that it will be known which is maternal and which is
-     * paternal.
-     */
-    readonly maternalOrganismName?: string;
-    /**
-     * The identifier of the paternal species constituting the hybrid
-     * organism shall be specified based on a controlled vocabulary.
-     */
-    readonly paternalOrganismId?: string;
-    /**
-     * The name of the paternal species constituting the hybrid organism
-     * shall be specified.
-     */
-    readonly paternalOrganismName?: string;
-    /**
-     * The hybrid type of an organism shall be specified.
-     */
-    readonly hybridType?: CodeableConcept;
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialOrganism {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The family of an organism shall be specified.
-     */
-    readonly family?: CodeableConcept;
-    /**
-     * The genus of an organism shall be specified; refers to the Latin
-     * epithet of the genus element of the plant/animal scientific name; it
-     * is present in names for genera, species and infraspecies.
-     */
-    readonly genus?: CodeableConcept;
-    /**
-     * The species of an organism shall be specified; refers to the Latin
-     * epithet of the species of the plant/animal; it is present in names for
-     * species and infraspecies.
-     */
-    readonly species?: CodeableConcept;
-    /**
-     * The Intraspecific type of an organism shall be specified.
-     */
-    readonly intraspecificType?: CodeableConcept;
-    /**
-     * The intraspecific description of an organism shall be specified based
-     * on a controlled vocabulary. For Influenza Vaccine, the intraspecific
-     * description shall contain the syntax of the antigen in line with the
-     * WHO convention.
-     */
-    readonly intraspecificDescription?: string;
-    /**
-     * 4.9.13.6.1 Author type (Conditional).
-     */
-    readonly author?: SubstanceSourceMaterialAuthor[];
-    /**
-     * 4.9.13.8.1 Hybrid species maternal organism ID (Optional).
-     */
-    readonly hybrid?: SubstanceSourceMaterialHybrid;
-    /**
-     * 4.9.13.7.1 Kingdom (Conditional).
-     */
-    readonly organismGeneral?: SubstanceSourceMaterialOrganismGeneral;
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialOrganismGeneral {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * The kingdom of an organism shall be specified.
-     */
-    readonly kingdom?: CodeableConcept;
-    /**
-     * The phylum of an organism shall be specified.
-     */
-    readonly phylum?: CodeableConcept;
-    /**
-     * The class of an organism shall be specified.
-     */
-    readonly class?: CodeableConcept;
-    /**
-     * The order of an organism shall be specified,.
-     */
-    readonly order?: CodeableConcept;
-}
-/**
- * Source material shall capture information on the taxonomic and
- * anatomical origins as well as the fraction of a material that can
- * result in or can be modified to form a substance. This set of data
- * elements shall be used to define polymer substances isolated from
- * biological matrices. Taxonomic and anatomical origins shall be
- * described using a controlled vocabulary as required. This information
- * is captured for naturally derived polymers ( . starch) and
- * structurally diverse substances. For Organisms belonging to the
- * Kingdom Plantae the Substance level defines the fresh material of a
- * single species or infraspecies, the Herbal Drug and the Herbal
- * preparation. For Herbal preparations, the fraction information will be
- * captured at the Substance information level and additional information
- * for herbal extracts will be captured at the Specified Substance Group
- * 1 information level. See for further explanation the Substance Class:
- * Structurally Diverse and the herbal annex.
- */
-export interface SubstanceSourceMaterialPartDescription {
-    /**
-     * Unique id for the element within a resource (for internal references).
-     * This may be any string value that does not contain spaces.
-     */
-    readonly id?: string;
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element. To make the use of extensions
-     * safe and manageable, there is a strict set of governance  applied to
-     * the definition and use of extensions. Though any implementer can
-     * define an extension, there is a set of requirements that SHALL be met
-     * as part of the definition of the extension.
-     */
-    readonly extension?: Extension[];
-    /**
-     * May be used to represent additional information that is not part of
-     * the basic definition of the element and that modifies the
-     * understanding of the element in which it is contained and/or the
-     * understanding of the containing element's descendants. Usually
-     * modifier elements provide negation or qualification. To make the use
-     * of extensions safe and manageable, there is a strict set of governance
-     * applied to the definition and use of extensions. Though any
-     * implementer can define an extension, there is a set of requirements
-     * that SHALL be met as part of the definition of the extension.
-     * Applications processing a resource are required to check for modifier
-     * extensions.
-     *
-     * Modifier extensions SHALL NOT change the meaning of any elements on
-     * Resource or DomainResource (including cannot change the meaning of
-     * modifierExtension itself).
-     */
-    readonly modifierExtension?: Extension[];
-    /**
-     * Entity of anatomical origin of source material within an organism.
-     */
-    readonly part?: CodeableConcept;
-    /**
-     * The detailed anatomic location when the part can be extracted from
-     * different anatomical locations of the organism. Multiple alternative
-     * locations may apply.
-     */
-    readonly partLocation?: CodeableConcept;
-}

package/dist/fhir/SubstanceSourceMaterial.js

@@ -1,7 +0,0 @@
-"use strict";
-/*
- * Generated by @medplum/generator
- * Do not edit manually.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=SubstanceSourceMaterial.js.map

package/dist/fhir/SubstanceSourceMaterial.js.map

@@ -1 +0,0 @@
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