@jbrowse/plugin-wiggle 1.7.0 → 1.7.4

package/dist/index.js

@@ -30,13 +30,13 @@ Object.defineProperty(exports, "Tooltip", {
 Object.defineProperty(exports, "WiggleBaseRenderer", {
   enumerable: true,
   get: function get() {
-    return _WiggleBaseRenderer["default"];
+    return _WiggleBaseRenderer.default;
   }
 });
 Object.defineProperty(exports, "WiggleRendering", {
   enumerable: true,
   get: function get() {
-    return _WiggleRendering["default"];
+    return _WiggleRendering.default;
   }
 });
 Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
@@ -45,7 +45,7 @@ Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
     return _LinearWiggleDisplay.YSCALEBAR_LABEL_OFFSET;
   }
 });
-exports["default"] = void 0;
+exports.default = void 0;
 Object.defineProperty(exports, "linearWiggleDisplayModelFactory", {
   enumerable: true,
   get: function get() {
@@ -115,48 +115,48 @@ var _Tooltip = require("./LinearWiggleDisplay/components/Tooltip");
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var WigglePlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(WigglePlugin, _Plugin);
+  (0, _inherits2.default)(WigglePlugin, _Plugin);
 
   var _super = _createSuper(WigglePlugin);
 
   function WigglePlugin() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, WigglePlugin);
+    (0, _classCallCheck2.default)(this, WigglePlugin);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'WigglePlugin');
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "exports", {
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'WigglePlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
       LinearWiggleDisplayReactComponent: _LinearWiggleDisplay.ReactComponent,
       XYPlotRendererReactComponent: _XYPlotRenderer.ReactComponent,
-      XYPlotRenderer: _XYPlotRenderer["default"],
+      XYPlotRenderer: _XYPlotRenderer.default,
       xyPlotRendererConfigSchema: _XYPlotRenderer.configSchema,
       utils: utils,
-      WiggleBaseRenderer: _WiggleBaseRenderer["default"],
+      WiggleBaseRenderer: _WiggleBaseRenderer.default,
       linearWiggleDisplayModelFactory: _LinearWiggleDisplay.modelFactory
     });
     return _this;
   }
 
-  (0, _createClass2["default"])(WigglePlugin, [{
+  (0, _createClass2.default)(WigglePlugin, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addTrackType(function () {
         var configSchema = (0, _configuration.ConfigurationSchema)('QuantitativeTrack', {}, {
           baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager)
         });
-        return new _TrackType["default"]({
+        return new _TrackType.default({
           name: 'QuantitativeTrack',
           configSchema: configSchema,
           stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema)
@@ -164,7 +164,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
       });
       pluginManager.addDisplayType(function () {
         var configSchema = (0, _LinearWiggleDisplay.configSchemaFactory)(pluginManager);
-        return new _DisplayType["default"]({
+        return new _DisplayType.default({
           name: 'LinearWiggleDisplay',
           configSchema: configSchema,
           stateModel: (0, _LinearWiggleDisplay.modelFactory)(pluginManager, configSchema),
@@ -174,7 +174,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'BigWigAdapter',
           configSchema: _BigWigAdapter.configSchema,
           adapterCapabilities: ['hasResolution', 'hasLocalStats', 'hasGlobalStats'],
@@ -182,7 +182,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
             return Promise.resolve().then(function () {
               return _interopRequireWildcard(require('./BigWigAdapter/BigWigAdapter'));
             }).then(function (r) {
-              return r["default"];
+              return r.default;
             });
           }
         });
@@ -216,7 +216,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
         };
       });
       pluginManager.addRendererType(function () {
-        return new _DensityRenderer["default"]({
+        return new _DensityRenderer.default({
           name: 'DensityRenderer',
           ReactComponent: _DensityRenderer.ReactComponent,
           configSchema: _DensityRenderer.configSchema,
@@ -224,7 +224,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addRendererType(function () {
-        return new _LinePlotRenderer["default"]({
+        return new _LinePlotRenderer.default({
           name: 'LinePlotRenderer',
           ReactComponent: _LinePlotRenderer.ReactComponent,
           configSchema: _LinePlotRenderer.configSchema,
@@ -232,7 +232,7 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addRendererType(function () {
-        return new _XYPlotRenderer["default"]({
+        return new _XYPlotRenderer.default({
           name: 'XYPlotRenderer',
           ReactComponent: _XYPlotRenderer.ReactComponent,
           configSchema: _XYPlotRenderer.configSchema,
@@ -248,6 +248,6 @@ var WigglePlugin = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return WigglePlugin;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = WigglePlugin;
+exports.default = WigglePlugin;

package/dist/index.test.js

@@ -10,11 +10,11 @@ var _ = _interopRequireDefault(require("."));
 
 test('plugin in a stock JBrowse', function () {
   console.warn = jest.fn();
-  var pluginManager = new _PluginManager["default"]([new _["default"]()]);
+  var pluginManager = new _PluginManager.default([new _.default()]);
   pluginManager.createPluggableElements();
   pluginManager.configure();
   expect(function () {
-    return pluginManager.addPlugin(new _["default"]());
+    return pluginManager.addPlugin(new _.default());
   }).toThrow(/JBrowse already configured, cannot add plugins/);
   var BigWigAdapter = pluginManager.getAdapterType('BigWigAdapter');
   var config = BigWigAdapter.configSchema.create({

package/dist/util.d.ts

@@ -1,41 +1,41 @@
-export interface ScaleOpts {
-    domain: number[];
-    range: number[];
-    scaleType: string;
-    pivotValue?: number;
-    inverted: boolean;
-}
-/**
- * produces a d3-scale from arguments. applies a "nice domain" adjustment
- *
- * @param object - containing attributes
- *   - domain [min,max]
- *   - range [min,max]
- *   - bounds [min,max]
- *   - scaleType (linear or log)
- *   - pivotValue (number)
- *   - inverted (boolean)
- */
-export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number> | import("d3-scale").ScaleQuantize<number>;
-/**
- * gets the origin for drawing the graph. for linear this is 0, for log this is arbitrarily set to log(1)==0
- *
- * @param scaleType -
- */
-export declare function getOrigin(scaleType: string): 1 | 0;
-/**
- * produces a "nice" domain that actually rounds down to 0 for the min
- * or 0 to the max depending on if all values are positive or negative
- *
- * @param object - containing attributes
- *   - domain [min,max]
- *   - bounds [min,max]
- *   - mean
- *   - stddev
- *   - scaleType (linear or log)
- */
-export declare function getNiceDomain({ scaleType, domain, bounds, }: {
-    scaleType: string;
-    domain: number[];
-    bounds: number[];
-}): [number, number];
+export interface ScaleOpts {
+    domain: number[];
+    range: number[];
+    scaleType: string;
+    pivotValue?: number;
+    inverted: boolean;
+}
+/**
+ * produces a d3-scale from arguments. applies a "nice domain" adjustment
+ *
+ * @param object - containing attributes
+ *   - domain [min,max]
+ *   - range [min,max]
+ *   - bounds [min,max]
+ *   - scaleType (linear or log)
+ *   - pivotValue (number)
+ *   - inverted (boolean)
+ */
+export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number> | import("d3-scale").ScaleQuantize<number>;
+/**
+ * gets the origin for drawing the graph. for linear this is 0, for log this is arbitrarily set to log(1)==0
+ *
+ * @param scaleType -
+ */
+export declare function getOrigin(scaleType: string): 1 | 0;
+/**
+ * produces a "nice" domain that actually rounds down to 0 for the min
+ * or 0 to the max depending on if all values are positive or negative
+ *
+ * @param object - containing attributes
+ *   - domain [min,max]
+ *   - bounds [min,max]
+ *   - mean
+ *   - stddev
+ *   - scaleType (linear or log)
+ */
+export declare function getNiceDomain({ scaleType, domain, bounds, }: {
+    scaleType: string;
+    domain: number[];
+    bounds: number[];
+}): [number, number];

package/dist/util.js

@@ -34,7 +34,7 @@ function getScale(_ref) {
       inverted = _ref.inverted;
   var scale;
 
-  var _domain = (0, _slicedToArray2["default"])(domain, 2),
+  var _domain = (0, _slicedToArray2.default)(domain, 2),
       min = _domain[0],
       max = _domain[1];
 
@@ -56,7 +56,7 @@ function getScale(_ref) {
   scale.domain(pivotValue !== undefined ? [min, pivotValue, max] : [min, max]);
   scale.nice();
 
-  var _range = (0, _slicedToArray2["default"])(range, 2),
+  var _range = (0, _slicedToArray2.default)(range, 2),
       rangeMin = _range[0],
       rangeMax = _range[1];
 
@@ -111,11 +111,11 @@ function getNiceDomain(_ref2) {
       domain = _ref2.domain,
       bounds = _ref2.bounds;
 
-  var _bounds = (0, _slicedToArray2["default"])(bounds, 2),
+  var _bounds = (0, _slicedToArray2.default)(bounds, 2),
       minScore = _bounds[0],
       maxScore = _bounds[1];
 
-  var _domain2 = (0, _slicedToArray2["default"])(domain, 2),
+  var _domain2 = (0, _slicedToArray2.default)(domain, 2),
       min = _domain2[0],
       max = _domain2[1];
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "1.7.0",
+  "version": "1.7.4",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -24,6 +24,7 @@
   ],
   "scripts": {
     "build": "babel src --root-mode upward --out-dir dist --extensions .ts,.js,.tsx,.jsx",
+    "postbuild": "tsc --build tsconfig.build.json",
     "test": "cd ../..; jest plugins/wiggle",
     "prepublishOnly": "yarn test",
     "prepack": "yarn build; yarn useDist",
@@ -32,13 +33,12 @@
     "useSrc": "node ../../scripts/useSrc.js"
   },
   "dependencies": {
+    "@babel/runtime": "^7.17.9",
     "@gmod/bbi": "^1.0.32",
     "@material-ui/icons": "^4.11.2",
     "@popperjs/core": "^2.11.0",
-    "abortable-promise-cache": "^1.5.0",
     "color": "^3.1.1",
     "d3-scale": "^3.2.3",
-    "json-stable-stringify": "^1.0.1",
     "react-color": "^2.19.3",
     "react-d3-axis-mod": "^0.1.3",
     "react-popper": "^2.0.0"
@@ -57,5 +57,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
+  "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
 }

package/dist/DensityRenderer/DensityRenderer.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/WiggleRendering.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/index.test.d.ts

@@ -1 +0,0 @@
-export {};