@jbrowse/plugin-wiggle 1.7.0 → 1.7.4

package/dist/BigWigAdapter/BigWigAdapter.d.ts

@@ -1,24 +1,24 @@
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-interface WiggleOptions extends BaseOptions {
-    resolution?: number;
-}
-export default class BigWigAdapter extends BaseFeatureDataAdapter {
-    private bigwig;
-    static capabilities: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private setup;
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    refIdToName(refId: number): Promise<any>;
-    getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;
-    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
-    estimateRegionsStats(_regions: Region[]): Promise<{
-        featureDensity: number;
-    }>;
-    freeResources(): void;
-}
-export {};
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+interface WiggleOptions extends BaseOptions {
+    resolution?: number;
+}
+export default class BigWigAdapter extends BaseFeatureDataAdapter {
+    private bigwig;
+    static capabilities: string[];
+    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    private setup;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    refIdToName(refId: number): Promise<any>;
+    getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;
+    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(_regions: Region[]): Promise<{
+        featureDensity: number;
+    }>;
+    freeResources(): void;
+}
+export {};

package/dist/BigWigAdapter/BigWigAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -45,38 +45,38 @@ var _stats = require("@jbrowse/core/util/stats");
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-  (0, _inherits2["default"])(BigWigAdapter, _BaseFeatureDataAdapt);
+  (0, _inherits2.default)(BigWigAdapter, _BaseFeatureDataAdapt);
 
   var _super = _createSuper(BigWigAdapter);
 
   function BigWigAdapter(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, BigWigAdapter);
+    (0, _classCallCheck2.default)(this, BigWigAdapter);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "bigwig", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "bigwig", void 0);
     _this.bigwig = new _bbi.BigWig({
       filehandle: (0, _io.openLocation)((0, _configuration.readConfObject)(config, 'bigWigLocation'), _this.pluginManager)
     });
     return _this;
   }
 
-  (0, _createClass2["default"])(BigWigAdapter, [{
+  (0, _createClass2.default)(BigWigAdapter, [{
     key: "setup",
     value: function () {
-      var _setup = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(opts) {
+      var _setup = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(opts) {
         var _this2 = this;
 
         var _ref, _ref$statusCallback, statusCallback;
 
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -102,10 +102,10 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "getRefNames",
     value: function () {
-      var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(opts) {
+      var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(opts) {
         var _yield$this$setup, refsByName;
 
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -134,12 +134,12 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "refIdToName",
     value: function () {
-      var _refIdToName = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(refId) {
+      var _refIdToName = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(refId) {
         var _refsByNumber$refId;
 
         var _yield$this$setup2, refsByNumber;
 
-        return _regenerator["default"].wrap(function _callee3$(_context3) {
+        return _regenerator.default.wrap(function _callee3$(_context3) {
           while (1) {
             switch (_context3.prev = _context3.next) {
               case 0:
@@ -168,10 +168,10 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "getGlobalStats",
     value: function () {
-      var _getGlobalStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(opts) {
+      var _getGlobalStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(opts) {
         var _yield$this$setup3, totalSummary;
 
-        return _regenerator["default"].wrap(function _callee4$(_context4) {
+        return _regenerator.default.wrap(function _callee4$(_context4) {
           while (1) {
             switch (_context4.prev = _context4.next) {
               case 0:
@@ -214,9 +214,9 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
           _opts$statusCallback = opts.statusCallback,
           statusCallback = _opts$statusCallback === void 0 ? function () {} : _opts$statusCallback;
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(observer) {
+        var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(observer) {
           var ob;
-          return _regenerator["default"].wrap(function _callee5$(_context5) {
+          return _regenerator.default.wrap(function _callee5$(_context5) {
             while (1) {
               switch (_context5.prev = _context5.next) {
                 case 0:
@@ -229,7 +229,7 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
                 case 3:
                   ob = _context5.sent;
                   ob.pipe((0, _operators.mergeAll)(), (0, _operators.map)(function (record) {
-                    return new _simpleFeature["default"]({
+                    return new _simpleFeature.default({
                       id: "".concat(refName, ":").concat(record.start, "-").concat(record.end),
                       data: _objectSpread(_objectSpread({}, record), {}, {
                         refName: refName
@@ -254,8 +254,8 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "estimateRegionsStats",
     value: function () {
-      var _estimateRegionsStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(_regions) {
-        return _regenerator["default"].wrap(function _callee6$(_context6) {
+      var _estimateRegionsStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(_regions) {
+        return _regenerator.default.wrap(function _callee6$(_context6) {
           while (1) {
             switch (_context6.prev = _context6.next) {
               case 0:
@@ -284,5 +284,5 @@ var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   return BigWigAdapter;
 }(_BaseAdapter.BaseFeatureDataAdapter);
 
-exports["default"] = BigWigAdapter;
-(0, _defineProperty2["default"])(BigWigAdapter, "capabilities", ['hasResolution', 'hasLocalStats', 'hasGlobalStats']);
+exports.default = BigWigAdapter;
+(0, _defineProperty2.default)(BigWigAdapter, "capabilities", ['hasResolution', 'hasLocalStats', 'hasGlobalStats']);

package/dist/BigWigAdapter/BigWigAdapter.test.js

@@ -15,16 +15,16 @@ var _configSchema = _interopRequireDefault(require("./configSchema"));
 describe('adapter can fetch features from volvox.bw', function () {
   var adapter;
   beforeEach(function () {
-    adapter = new _BigWigAdapter["default"](_configSchema["default"].create({
+    adapter = new _BigWigAdapter.default(_configSchema.default.create({
       bigWigLocation: {
         localPath: require.resolve('./test_data/volvox.bw'),
         locationType: 'LocalPathLocation'
       }
     }));
   });
-  it('test basic aspects of getfeatures', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+  it('test basic aspects of getfeatures', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
     var features, featuresArray, featuresJsonArray;
-    return _regenerator["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:
@@ -79,8 +79,8 @@ describe('adapter can fetch features from volvox.bw', function () {
       }
     }, _callee);
   })));
-  it('adapter can fetch stats from volvox.bw', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
-    return _regenerator["default"].wrap(function _callee2$(_context2) {
+  it('adapter can fetch stats from volvox.bw', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+    return _regenerator.default.wrap(function _callee2$(_context2) {
       while (1) {
         switch (_context2.prev = _context2.next) {
           case 0:
@@ -99,8 +99,8 @@ describe('adapter can fetch features from volvox.bw', function () {
       }
     }, _callee2);
   })));
-  it('get region stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
-    return _regenerator["default"].wrap(function _callee3$(_context3) {
+  it('get region stats', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
+    return _regenerator.default.wrap(function _callee3$(_context3) {
       while (1) {
         switch (_context3.prev = _context3.next) {
           case 0:
@@ -124,8 +124,8 @@ describe('adapter can fetch features from volvox.bw', function () {
       }
     }, _callee3);
   })));
-  it('get local stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4() {
-    return _regenerator["default"].wrap(function _callee4$(_context4) {
+  it('get local stats', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
+    return _regenerator.default.wrap(function _callee4$(_context4) {
       while (1) {
         switch (_context4.prev = _context4.next) {
           case 0:

package/dist/BigWigAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/BigWigAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -19,4 +19,4 @@ var _default = (0, _configuration.ConfigurationSchema)('BigWigAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/BigWigAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/BigWigAdapter/index.js

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/DensityRenderer/DensityRenderer.test.js

@@ -16,30 +16,30 @@ var _ = _interopRequireWildcard(require("."));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var pluginManager = {};
-var renderer = new _["default"]({
+var renderer = new _.default({
   name: 'DensityRenderer',
   ReactComponent: _.ReactComponent,
   configSchema: _.configSchema,
   pluginManager: pluginManager
 });
-test('inverted mode and reversed', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('inverted mode and reversed', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var renderProps, res;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
           renderProps = {
-            features: [new _simpleFeature["default"]({
+            features: [new _simpleFeature.default({
               id: 't1',
               data: {
                 start: 1,
                 end: 100,
                 score: 1
               }
-            }), new _simpleFeature["default"]({
+            }), new _simpleFeature.default({
               id: 't2',
               data: {
                 start: 101,

package/dist/DensityRenderer/index.d.ts

@@ -1,6 +1,6 @@
-import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export { default as ReactComponent } from '../WiggleRendering';
-export default class DensityRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
-}
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+export { default as ReactComponent } from '../WiggleRendering';
+export default class DensityRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
+}
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/DensityRenderer/index.js

@@ -8,10 +8,10 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "ReactComponent", {
   enumerable: true,
   get: function get() {
-    return _WiggleRendering["default"];
+    return _WiggleRendering.default;
   }
 });
-exports["default"] = exports.configSchema = void 0;
+exports.default = exports.configSchema = void 0;
 
 var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
@@ -39,7 +39,7 @@ var _WiggleBaseRenderer2 = _interopRequireDefault(require("../WiggleBaseRenderer
 
 var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -47,23 +47,23 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
-  (0, _inherits2["default"])(DensityRenderer, _WiggleBaseRenderer);
+  (0, _inherits2.default)(DensityRenderer, _WiggleBaseRenderer);
 
   var _super = _createSuper(DensityRenderer);
 
   function DensityRenderer() {
-    (0, _classCallCheck2["default"])(this, DensityRenderer);
+    (0, _classCallCheck2.default)(this, DensityRenderer);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(DensityRenderer, [{
+  (0, _createClass2.default)(DensityRenderer, [{
     key: "draw",
     value: function draw(ctx, props) {
       var features = props.features,
@@ -73,7 +73,7 @@ var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           height = props.height,
           config = props.config;
 
-      var _regions = (0, _slicedToArray2["default"])(regions, 1),
+      var _regions = (0, _slicedToArray2.default)(regions, 1),
           region = _regions[0];
 
       var pivot = (0, _configuration.readConfObject)(config, 'bicolorPivot');
@@ -110,7 +110,7 @@ var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           var feature = _step.value;
 
           var _featureSpanPx = (0, _util.featureSpanPx)(feature, region, bpPerPx),
-              _featureSpanPx2 = (0, _slicedToArray2["default"])(_featureSpanPx, 2),
+              _featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
               leftPx = _featureSpanPx2[0],
               rightPx = _featureSpanPx2[1];
 
@@ -127,11 +127,11 @@ var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
     }
   }]);
   return DensityRenderer;
-}(_WiggleBaseRenderer2["default"]);
+}(_WiggleBaseRenderer2.default);
 
-exports["default"] = DensityRenderer;
+exports.default = DensityRenderer;
 var configSchema = (0, _configuration.ConfigurationSchema)('DensityRenderer', {}, {
-  baseConfiguration: _configSchema["default"],
+  baseConfiguration: _configSchema.default,
   explicitlyTyped: true
 });
 exports.configSchema = configSchema;

package/dist/LinePlotRenderer/LinePlotRenderer.d.ts

@@ -1,9 +1,4 @@
-export default class LinePlotRenderer extends WiggleBaseRenderer {
-    constructor(stuff: {
-        name: string;
-        ReactComponent: import("react").ComponentType<any>;
-        configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        pluginManager: import("@jbrowse/core/PluginManager").default;
-    });
-}
-import WiggleBaseRenderer from "../WiggleBaseRenderer";
+export default class LinePlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: any, props: any): void;
+}
+import WiggleBaseRenderer from "../WiggleBaseRenderer";

package/dist/LinePlotRenderer/LinePlotRenderer.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
@@ -31,7 +31,7 @@ var _WiggleBaseRenderer2 = _interopRequireDefault(require("../WiggleBaseRenderer
 
 var _model = require("../LinearWiggleDisplay/models/model");
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -39,23 +39,23 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var LinePlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
-  (0, _inherits2["default"])(LinePlotRenderer, _WiggleBaseRenderer);
+  (0, _inherits2.default)(LinePlotRenderer, _WiggleBaseRenderer);
 
   var _super = _createSuper(LinePlotRenderer);
 
   function LinePlotRenderer() {
-    (0, _classCallCheck2["default"])(this, LinePlotRenderer);
+    (0, _classCallCheck2.default)(this, LinePlotRenderer);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(LinePlotRenderer, [{
+  (0, _createClass2.default)(LinePlotRenderer, [{
     key: "draw",
     value: function draw(ctx, props) {
       var features = props.features,
@@ -67,7 +67,7 @@ var LinePlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           displayCrossHatches = props.displayCrossHatches,
           config = props.config;
 
-      var _regions = (0, _slicedToArray2["default"])(regions, 1),
+      var _regions = (0, _slicedToArray2.default)(regions, 1),
           region = _regions[0];
 
       var width = (region.end - region.start) / bpPerPx;
@@ -83,7 +83,7 @@ var LinePlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
       }));
 
       var _scale$domain = scale.domain(),
-          _scale$domain2 = (0, _slicedToArray2["default"])(_scale$domain, 2),
+          _scale$domain2 = (0, _slicedToArray2.default)(_scale$domain, 2),
           niceMin = _scale$domain2[0],
           niceMax = _scale$domain2[1];
 
@@ -108,7 +108,7 @@ var LinePlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           var feature = _step.value;
 
           var _featureSpanPx = (0, _util.featureSpanPx)(feature, region, bpPerPx),
-              _featureSpanPx2 = (0, _slicedToArray2["default"])(_featureSpanPx, 2),
+              _featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
               leftPx = _featureSpanPx2[0],
               rightPx = _featureSpanPx2[1];
 
@@ -166,6 +166,6 @@ var LinePlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
     }
   }]);
   return LinePlotRenderer;
-}(_WiggleBaseRenderer2["default"]);
+}(_WiggleBaseRenderer2.default);
 
-exports["default"] = LinePlotRenderer;
+exports.default = LinePlotRenderer;

package/dist/LinePlotRenderer/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/LinePlotRenderer/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -67,4 +67,4 @@ var _default = (0, _configuration.ConfigurationSchema)('WiggleRenderer', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinePlotRenderer/index.d.ts

@@ -1,3 +1,3 @@
-export { default as ReactComponent } from "../WiggleRendering";
-export { default } from "./LinePlotRenderer";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as ReactComponent } from "../WiggleRendering";
+export { default } from "./LinePlotRenderer";
+export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/LinePlotRenderer/index.js

@@ -8,14 +8,14 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "ReactComponent", {
   enumerable: true,
   get: function get() {
-    return _WiggleRendering["default"];
+    return _WiggleRendering.default;
   }
 });
 exports.configSchema = void 0;
 Object.defineProperty(exports, "default", {
   enumerable: true,
   get: function get() {
-    return _LinePlotRenderer["default"];
+    return _LinePlotRenderer.default;
   }
 });
 
@@ -28,7 +28,7 @@ var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
 var _LinePlotRenderer = _interopRequireDefault(require("./LinePlotRenderer"));
 
 var configSchema = (0, _configuration.ConfigurationSchema)('LinePlotRenderer', {}, {
-  baseConfiguration: _configSchema["default"],
+  baseConfiguration: _configSchema.default,
   explicitlyTyped: true
 });
 exports.configSchema = configSchema;

package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -1,10 +1,10 @@
-/// <reference types="react" />
-export default function SetColorDialog({ model, handleClose, }: {
-    model: {
-        color: number;
-        setColor: (arg?: string) => void;
-        setPosColor: (arg?: string) => void;
-        setNegColor: (arg?: string) => void;
-    };
-    handleClose: () => void;
-}): JSX.Element;
+/// <reference types="react" />
+export default function SetColorDialog({ model, handleClose, }: {
+    model: {
+        color: number;
+        setColor: (arg?: string) => void;
+        setPosColor: (arg?: string) => void;
+        setNegColor: (arg?: string) => void;
+    };
+    handleClose: () => void;
+}): JSX.Element;