@jbrowse/plugin-wiggle 1.7.0 → 1.7.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +24 -24
- package/dist/BigWigAdapter/BigWigAdapter.js +22 -22
- package/dist/BigWigAdapter/BigWigAdapter.test.js +9 -9
- package/dist/BigWigAdapter/configSchema.d.ts +2 -2
- package/dist/BigWigAdapter/configSchema.js +2 -2
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +1 -1
- package/dist/DensityRenderer/DensityRenderer.test.js +6 -6
- package/dist/DensityRenderer/index.d.ts +6 -6
- package/dist/DensityRenderer/index.js +13 -13
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -9
- package/dist/LinePlotRenderer/LinePlotRenderer.js +12 -12
- package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
- package/dist/LinePlotRenderer/configSchema.js +2 -2
- package/dist/LinePlotRenderer/index.d.ts +3 -3
- package/dist/LinePlotRenderer/index.js +3 -3
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +10 -10
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +14 -14
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -11
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +13 -13
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +24 -24
- package/dist/LinearWiggleDisplay/components/Tooltip.js +14 -14
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -8
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -5
- package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -7
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +3 -3
- package/dist/LinearWiggleDisplay/index.d.ts +3 -3
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +2 -2
- package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +288 -288
- package/dist/LinearWiggleDisplay/models/model.js +27 -27
- package/dist/WiggleBaseRenderer.d.ts +44 -42
- package/dist/WiggleBaseRenderer.js +13 -13
- package/dist/WiggleRPC/rpcMethods.d.ts +31 -31
- package/dist/WiggleRPC/rpcMethods.js +27 -27
- package/dist/WiggleRendering.d.ts +16 -16
- package/dist/WiggleRendering.js +7 -7
- package/dist/WiggleRendering.test.js +3 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -4
- package/dist/XYPlotRenderer/XYPlotRenderer.js +15 -15
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +6 -6
- package/dist/XYPlotRenderer/index.d.ts +3 -3
- package/dist/XYPlotRenderer/index.js +3 -3
- package/dist/configSchema.d.ts +2 -2
- package/dist/configSchema.js +2 -2
- package/dist/index.d.ts +866 -866
- package/dist/index.js +21 -21
- package/dist/index.test.js +2 -2
- package/dist/util.d.ts +41 -41
- package/dist/util.js +4 -4
- package/package.json +4 -4
- package/dist/DensityRenderer/DensityRenderer.test.d.ts +0 -1
- package/dist/WiggleRendering.test.d.ts +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts +0 -1
- package/dist/index.test.d.ts +0 -1
- package/dist/plugin-wiggle.cjs.development.js +0 -3556
- package/dist/plugin-wiggle.cjs.development.js.map +0 -1
- package/dist/plugin-wiggle.cjs.production.min.js +0 -2
- package/dist/plugin-wiggle.cjs.production.min.js.map +0 -1
- package/dist/plugin-wiggle.esm.js +0 -3541
- package/dist/plugin-wiggle.esm.js.map +0 -1
- package/dist/util.test.d.ts +0 -1
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@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
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Object.defineProperty(exports, "__esModule", {
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});
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exports
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exports.default = SetColorDialog;
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var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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@@ -21,7 +21,7 @@ var _reactColor = require("react-color");
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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var useStyles = (0, _core.makeStyles)(function (theme) {
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return {
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@@ -53,46 +53,46 @@ function SetColorDialog(_ref2) {
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var classes = useStyles();
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var _useState = (0, _react.useState)(false),
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_useState2 = (0, _slicedToArray2
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_useState2 = (0, _slicedToArray2.default)(_useState, 2),
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posneg = _useState2[0],
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setPosNeg = _useState2[1];
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return /*#__PURE__*/_react
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return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
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open: true,
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onClose: handleClose
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
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"aria-label": "close",
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className: classes.closeButton,
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onClick: handleClose
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
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checked: !posneg,
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onClick: function onClick() {
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return setPosNeg(false);
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control: /*#__PURE__*/_react
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control: /*#__PURE__*/_react.default.createElement(_core.Radio, null),
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label: 'Overall color'
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}), /*#__PURE__*/_react
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}), /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
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checked: posneg,
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onClick: function onClick() {
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return setPosNeg(true);
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control: /*#__PURE__*/_react.default.createElement(_core.Radio, null),
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label: 'Positive/negative color'
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}), posneg ? /*#__PURE__*/_react
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}), posneg ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Positive color"), /*#__PURE__*/_react.default.createElement(_reactColor.CompactPicker, {
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onChange: function onChange(event) {
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model.setPosColor(serialize(event.rgb));
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}), /*#__PURE__*/_react
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}), /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Negative color"), /*#__PURE__*/_react.default.createElement(_reactColor.CompactPicker, {
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onChange: function onChange(event) {
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model.setNegColor(serialize(event.rgb));
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model.setColor(undefined);
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}
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})) : /*#__PURE__*/_react
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})) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Overall color"), /*#__PURE__*/_react.default.createElement(_reactColor.CompactPicker, {
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onChange: function onChange(event) {
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model.setColor(serialize(event.rgb));
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}
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}))), /*#__PURE__*/_react
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}))), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
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onClick: function onClick() {
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model.setPosColor(undefined);
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model.setNegColor(undefined);
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},
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color: "secondary",
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variant: "contained"
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}, "Restore default"), /*#__PURE__*/_react
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}, "Restore default"), /*#__PURE__*/_react.default.createElement(_core.Button, {
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color: "primary",
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type: "submit",
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/// <reference types="react" />
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export default function SetMinMaxDlg(props: {
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model: {
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minScore: number;
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maxScore: number;
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scaleType: string;
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setMinScore: Function;
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setMaxScore: Function;
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};
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handleClose: () => void;
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}): JSX.Element;
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/// <reference types="react" />
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export default function SetMinMaxDlg(props: {
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model: {
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minScore: number;
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maxScore: number;
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scaleType: string;
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setMinScore: Function;
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setMaxScore: Function;
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};
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handleClose: () => void;
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}): JSX.Element;
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exports.default = SetMinMaxDlg;
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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scaleType = model.scaleType;
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var _useState = (0, _react.useState)("".concat(minScore !== Number.MIN_VALUE ? minScore : '')),
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_useState2 = (0, _slicedToArray2.default)(_useState, 2),
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min = _useState2[0],
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setMin = _useState2[1];
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var _useState3 = (0, _react.useState)("".concat(maxScore !== Number.MAX_VALUE ? maxScore : '')),
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_useState4 = (0, _slicedToArray2
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_useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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max = _useState4[0],
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setMax = _useState4[1];
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var ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max) ? +max > +min : true;
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var logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
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return /*#__PURE__*/_react
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return /*#__PURE__*/_react.default.createElement(_Dialog.default, {
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_DialogTitle.default, null, "Set min/max score for track", /*#__PURE__*/_react.default.createElement(_IconButton.default, {
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onClick: handleClose
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}, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_DialogContent.default, {
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Typography.default, null, "Enter min/max score: "), !ok ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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}, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react
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}, "Max is greater than or equal to min") : null, !logOk ? /*#__PURE__*/_react.default.createElement(_Typography.default, {
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}, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react
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}, "Min score should be greater than 0 for log scale") : null, /*#__PURE__*/_react.default.createElement(_TextField.default, {
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}), /*#__PURE__*/_react.default.createElement(_TextField.default, {
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}), /*#__PURE__*/_react.default.createElement(_Button.default, {
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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import PluginManager from '@jbrowse/core/PluginManager';
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export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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