@jbrowse/plugin-wiggle 1.7.0 → 1.7.4

package/dist/WiggleRendering.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -19,9 +19,9 @@ var _ui = require("@jbrowse/core/ui");
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -40,7 +40,7 @@ function WiggleRendering(props) {
       _props$onFeatureClick = props.onFeatureClick,
       onFeatureClick = _props$onFeatureClick === void 0 ? function () {} : _props$onFeatureClick;
 
-  var _regions = (0, _slicedToArray2["default"])(regions, 1),
+  var _regions = (0, _slicedToArray2.default)(regions, 1),
       region = _regions[0];
 
   var ref = (0, _react.useRef)(null);
@@ -79,7 +79,7 @@ function WiggleRendering(props) {
     return featureUnderMouse;
   }
 
-  return /*#__PURE__*/_react["default"].createElement("div", {
+  return /*#__PURE__*/_react.default.createElement("div", {
     ref: ref,
     "data-testid": "wiggle-rendering-test",
     onMouseMove: function onMouseMove(event) {
@@ -101,9 +101,9 @@ function WiggleRendering(props) {
       position: 'relative',
       height: height
     }
-  }, /*#__PURE__*/_react["default"].createElement(_ui.PrerenderedCanvas, props));
+  }, /*#__PURE__*/_react.default.createElement(_ui.PrerenderedCanvas, props));
 }
 
 var _default = (0, _mobxReact.observer)(WiggleRendering);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/WiggleRendering.test.js

@@ -13,14 +13,14 @@ var _react2 = require("@testing-library/react");
 var _WiggleRendering = _interopRequireDefault(require("./WiggleRendering"));
 
 // these tests do very little, let's try to expand them at some point
-test('one', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('one', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var _render, container, getByTestId, test;
 
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_WiggleRendering["default"], {
+          _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_WiggleRendering.default, {
             width: 500,
             height: 500,
             features: new Map(),

package/dist/XYPlotRenderer/XYPlotRenderer.d.ts

@@ -1,4 +1,4 @@
-import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export default class XYPlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
-}
+import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+export default class XYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
+}

package/dist/XYPlotRenderer/XYPlotRenderer.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
@@ -33,7 +33,7 @@ var _WiggleBaseRenderer2 = _interopRequireDefault(require("../WiggleBaseRenderer
 
 var _model = require("../LinearWiggleDisplay/models/model");
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -41,23 +41,23 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
-  (0, _inherits2["default"])(XYPlotRenderer, _WiggleBaseRenderer);
+  (0, _inherits2.default)(XYPlotRenderer, _WiggleBaseRenderer);
 
   var _super = _createSuper(XYPlotRenderer);
 
   function XYPlotRenderer() {
-    (0, _classCallCheck2["default"])(this, XYPlotRenderer);
+    (0, _classCallCheck2.default)(this, XYPlotRenderer);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(XYPlotRenderer, [{
+  (0, _createClass2.default)(XYPlotRenderer, [{
     key: "draw",
     value: function draw(ctx, props) {
       var features = props.features,
@@ -69,7 +69,7 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           ticks = props.ticks,
           displayCrossHatches = props.displayCrossHatches;
 
-      var _regions = (0, _slicedToArray2["default"])(regions, 1),
+      var _regions = (0, _slicedToArray2.default)(regions, 1),
           region = _regions[0];
 
       var width = (region.end - region.start) / bpPerPx; // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
@@ -91,7 +91,7 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
       var originY = (0, _util2.getOrigin)(scaleOpts.scaleType);
 
       var _scale$domain = scale.domain(),
-          _scale$domain2 = (0, _slicedToArray2["default"])(_scale$domain, 2),
+          _scale$domain2 = (0, _slicedToArray2.default)(_scale$domain, 2),
           niceMin = _scale$domain2[0],
           niceMax = _scale$domain2[1];
 
@@ -120,7 +120,7 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
           var feature = _step.value;
 
           var _featureSpanPx = (0, _util.featureSpanPx)(feature, region, bpPerPx),
-              _featureSpanPx2 = (0, _slicedToArray2["default"])(_featureSpanPx, 2),
+              _featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
               leftPx = _featureSpanPx2[0],
               rightPx = _featureSpanPx2[1];
 
@@ -145,16 +145,16 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
             var c = colorCallback(feature, score);
 
             if (summary) {
-              ctx.fillStyle = crossingOrigin ? colorCallback(feature, maxr) : (0, _color["default"])(c).lighten(0.6).toString();
+              ctx.fillStyle = crossingOrigin ? colorCallback(feature, maxr) : (0, _color.default)(c).lighten(0.6).toString();
               ctx.fillRect(leftPx, toY(maxr), w, filled ? toHeight(maxr) - toHeight(score) : 1);
             } // normal
 
 
-            ctx.fillStyle = crossingOrigin && summary ? (0, _color["default"])(colorCallback(feature, maxr)).mix((0, _color["default"])(colorCallback(feature, minr))) : c;
+            ctx.fillStyle = crossingOrigin && summary ? (0, _color.default)(colorCallback(feature, maxr)).mix((0, _color.default)(colorCallback(feature, minr))) : c;
             ctx.fillRect(leftPx, toY(score), w, filled ? toHeight(score) - (summary ? toHeight(minr) : 0) : 1); // min
 
             if (summary) {
-              ctx.fillStyle = crossingOrigin ? colorCallback(feature, minr) : (0, _color["default"])(c).darken(0.6).toString();
+              ctx.fillStyle = crossingOrigin ? colorCallback(feature, minr) : (0, _color.default)(c).darken(0.6).toString();
               ctx.fillRect(leftPx, toY(minr), w, filled ? toHeight(minr) : 1);
             }
           } else {
@@ -194,6 +194,6 @@ var XYPlotRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
     }
   }]);
   return XYPlotRenderer;
-}(_WiggleBaseRenderer2["default"]);
+}(_WiggleBaseRenderer2.default);
 
-exports["default"] = XYPlotRenderer;
+exports.default = XYPlotRenderer;

package/dist/XYPlotRenderer/XYPlotRenderer.test.js

@@ -16,30 +16,30 @@ var _ = _interopRequireWildcard(require("."));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-test('several features', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('several features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var pluginManager, renderer, renderProps, res;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
           pluginManager = {};
-          renderer = new _["default"]({
+          renderer = new _.default({
             name: 'XYPlotRenderer',
             ReactComponent: _.ReactComponent,
             configSchema: _.configSchema,
             pluginManager: pluginManager
           });
           renderProps = {
-            features: [new _simpleFeature["default"]({
+            features: [new _simpleFeature.default({
               id: 't1',
               data: {
                 start: 1,
                 end: 100,
                 score: 1
               }
-            }), new _simpleFeature["default"]({
+            }), new _simpleFeature.default({
               id: 't2',
               data: {
                 start: 101,

package/dist/XYPlotRenderer/index.d.ts

@@ -1,3 +1,3 @@
-export { default as ReactComponent } from '../WiggleRendering';
-export { default } from './XYPlotRenderer';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as ReactComponent } from '../WiggleRendering';
+export { default } from './XYPlotRenderer';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/XYPlotRenderer/index.js

@@ -8,14 +8,14 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "ReactComponent", {
   enumerable: true,
   get: function get() {
-    return _WiggleRendering["default"];
+    return _WiggleRendering.default;
   }
 });
 exports.configSchema = void 0;
 Object.defineProperty(exports, "default", {
   enumerable: true,
   get: function get() {
-    return _XYPlotRenderer["default"];
+    return _XYPlotRenderer.default;
   }
 });
 
@@ -28,7 +28,7 @@ var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
 var _XYPlotRenderer = _interopRequireDefault(require("./XYPlotRenderer"));
 
 var configSchema = (0, _configuration.ConfigurationSchema)('XYPlotRenderer', {}, {
-  baseConfiguration: _configSchema["default"],
+  baseConfiguration: _configSchema.default,
   explicitlyTyped: true
 });
 exports.configSchema = configSchema;

package/dist/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -72,4 +72,4 @@ var _default = (0, _configuration.ConfigurationSchema)('WiggleRenderer', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;