@jbrowse/plugin-wiggle 1.7.0 → 1.7.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +24 -24
- package/dist/BigWigAdapter/BigWigAdapter.js +22 -22
- package/dist/BigWigAdapter/BigWigAdapter.test.js +9 -9
- package/dist/BigWigAdapter/configSchema.d.ts +2 -2
- package/dist/BigWigAdapter/configSchema.js +2 -2
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +1 -1
- package/dist/DensityRenderer/DensityRenderer.test.js +6 -6
- package/dist/DensityRenderer/index.d.ts +6 -6
- package/dist/DensityRenderer/index.js +13 -13
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -9
- package/dist/LinePlotRenderer/LinePlotRenderer.js +12 -12
- package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
- package/dist/LinePlotRenderer/configSchema.js +2 -2
- package/dist/LinePlotRenderer/index.d.ts +3 -3
- package/dist/LinePlotRenderer/index.js +3 -3
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +10 -10
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +14 -14
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -11
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +13 -13
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +24 -24
- package/dist/LinearWiggleDisplay/components/Tooltip.js +14 -14
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -8
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -5
- package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -7
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +3 -3
- package/dist/LinearWiggleDisplay/index.d.ts +3 -3
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +2 -2
- package/dist/LinearWiggleDisplay/models/configSchema.js +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +288 -288
- package/dist/LinearWiggleDisplay/models/model.js +27 -27
- package/dist/WiggleBaseRenderer.d.ts +44 -42
- package/dist/WiggleBaseRenderer.js +13 -13
- package/dist/WiggleRPC/rpcMethods.d.ts +31 -31
- package/dist/WiggleRPC/rpcMethods.js +27 -27
- package/dist/WiggleRendering.d.ts +16 -16
- package/dist/WiggleRendering.js +7 -7
- package/dist/WiggleRendering.test.js +3 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -4
- package/dist/XYPlotRenderer/XYPlotRenderer.js +15 -15
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +6 -6
- package/dist/XYPlotRenderer/index.d.ts +3 -3
- package/dist/XYPlotRenderer/index.js +3 -3
- package/dist/configSchema.d.ts +2 -2
- package/dist/configSchema.js +2 -2
- package/dist/index.d.ts +866 -866
- package/dist/index.js +21 -21
- package/dist/index.test.js +2 -2
- package/dist/util.d.ts +41 -41
- package/dist/util.js +4 -4
- package/package.json +4 -4
- package/dist/DensityRenderer/DensityRenderer.test.d.ts +0 -1
- package/dist/WiggleRendering.test.d.ts +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts +0 -1
- package/dist/index.test.d.ts +0 -1
- package/dist/plugin-wiggle.cjs.development.js +0 -3556
- package/dist/plugin-wiggle.cjs.development.js.map +0 -1
- package/dist/plugin-wiggle.cjs.production.min.js +0 -2
- package/dist/plugin-wiggle.cjs.production.min.js.map +0 -1
- package/dist/plugin-wiggle.esm.js +0 -3541
- package/dist/plugin-wiggle.esm.js.map +0 -1
- package/dist/util.test.d.ts +0 -1
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exports
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exports.default = exports.YSCALEBAR_LABEL_OFFSET = void 0;
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var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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var SetMinMaxDlg = /*#__PURE__*/(0, _react.lazy)(function () {
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configuration: (0, _configuration.ConfigurationReference)(configSchema),
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selectedRendering: _mobxStateTree.types.optional(_mobxStateTree.types.string, ''),
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resolution: _mobxStateTree.types.optional(_mobxStateTree.types.number, 1),
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fill: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
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posColor: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
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autoscale: _mobxStateTree.types.maybe(_mobxStateTree.types.string),
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displayCrossHatches: _mobxStateTree.types.maybe(_mobxStateTree.types
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displayCrossHatches: _mobxStateTree.types.maybe(_mobxStateTree.types.boolean),
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constraints: _mobxStateTree.types.optional(_mobxStateTree.types.model({
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}))
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})).volatile(function () {
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}).views(function (self) {
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get TooltipComponent() {
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return _Tooltip
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return _Tooltip.default;
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get adapterTypeName() {
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var superTrackMenuItems = self.trackMenuItems;
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trackMenuItems: function trackMenuItems() {
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return [].concat((0, _toConsumableArray2.default)(superTrackMenuItems()), (0, _toConsumableArray2.default)(self.hasResolution ? [{
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})
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}] : []), (0, _toConsumableArray2
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}] : []), (0, _toConsumableArray2.default)(self.canHaveFill ? [{
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label: self.filled ? 'Turn off histogram fill' : 'Turn on histogram fill',
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onClick: function onClick() {
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self.setFill(!self.filled);
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onClick: function onClick() {
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self.toggleCrossHatches();
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}
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}], (0, _toConsumableArray2
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}], (0, _toConsumableArray2.default)(Object.keys((0, _configuration.getConf)(self, 'renderers') || {}).length > 1 ? [{
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subMenu: (0, _toConsumableArray2
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subMenu: (0, _toConsumableArray2.default)(rendererTypes.keys()).map(function (key) {
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subMenu: [['local', 'Local']].concat((0, _toConsumableArray2
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subMenu: [['local', 'Local']].concat((0, _toConsumableArray2.default)(self.hasGlobalStats ? [['global', 'Global'], ['globalsd', 'Global ± 3σ']] : []), [['localsd', 'Local ± 3σ']]).map(function (_ref2) {
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var _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
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function _getStats() {
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_getStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(opts) {
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var _getSession, rpcManager, nd, adapterConfig, autoscaleType, sessionId, params, results, scoreMin, scoreMean, scoreStdDev, _ref6, dynamicBlocks, bpPerPx, _results, _scoreMin, _scoreMean, _scoreStdDev;
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// re-runs stats and refresh whole display on reload
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(0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)( /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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_ref5 = (0, _util.getContainingView)(self), offsetPx = _ref5.offsetPx;
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_context3.t0 = _react.default;
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_context3.t1 = _react.default.Fragment;
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_context3.t2 = _react.default;
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_context3.t6 = needsScalebar && stats ? /*#__PURE__*/_react
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_context3.t6 = needsScalebar && stats ? /*#__PURE__*/_react.default.createElement("g", {
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_WiggleDisplayComponent.YScaleBar, {
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import FeatureRendererType, { RenderArgs as FeatureRenderArgs, RenderArgsSerialized, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderResults, ResultsSerialized, ResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
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/// <reference types="react" />
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import { Region } from '@jbrowse/core/util/types';
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import { Feature } from '@jbrowse/core/util/simpleFeature';
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declare function WiggleRendering(props: {
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features: Map<string, Feature>;
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}): JSX.Element;
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/// <reference types="react" />
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declare function WiggleRendering(props: {
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regions: Region[];
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features: Map<string, Feature>;
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width: number;
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height: number;
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blockKey: string;
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}): JSX.Element;
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declare const _default: typeof WiggleRendering;
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export default _default;
|