@jbrowse/plugin-linear-genome-view 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (357) hide show
  1. package/esm/FeatureTrack/configSchema.d.ts +104 -65
  2. package/esm/FeatureTrack/configSchema.js +47 -1
  3. package/esm/FeatureTrack/index.js +1 -1
  4. package/esm/LaunchLinearGenomeView/index.d.ts +14 -0
  5. package/esm/LaunchLinearGenomeView/index.js +6 -12
  6. package/esm/LinearGenomeView/afterAttach.d.ts +20 -2
  7. package/esm/LinearGenomeView/afterAttach.js +250 -121
  8. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -1
  9. package/esm/LinearGenomeView/components/CenterLine.js +16 -7
  10. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.d.ts +7 -0
  11. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.js +22 -0
  12. package/esm/LinearGenomeView/components/CrisprGuidePanel.d.ts +3 -0
  13. package/esm/LinearGenomeView/components/CrisprGuidePanel.js +144 -0
  14. package/esm/LinearGenomeView/components/Cytobands.d.ts +6 -6
  15. package/esm/LinearGenomeView/components/Cytobands.js +76 -53
  16. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +7 -3
  17. package/esm/LinearGenomeView/components/ExportSvgDialog.js +11 -67
  18. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +5 -9
  19. package/esm/LinearGenomeView/components/GetSequenceDialog.js +84 -88
  20. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -1
  21. package/esm/LinearGenomeView/components/Gridlines.js +29 -58
  22. package/esm/LinearGenomeView/components/Header.d.ts +1 -1
  23. package/esm/LinearGenomeView/components/Header.js +32 -16
  24. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.d.ts +21 -0
  25. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.js +35 -0
  26. package/esm/LinearGenomeView/components/HeaderPanControls.d.ts +3 -2
  27. package/esm/LinearGenomeView/components/HeaderPanControls.js +16 -7
  28. package/esm/LinearGenomeView/components/HeaderRegionWidth.d.ts +1 -1
  29. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +9 -6
  30. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.d.ts +6 -0
  31. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.js +27 -0
  32. package/esm/LinearGenomeView/components/HeaderSearchBoxes.d.ts +5 -0
  33. package/esm/LinearGenomeView/components/HeaderSearchBoxes.js +28 -0
  34. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +3 -2
  35. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +11 -4
  36. package/esm/LinearGenomeView/components/HeaderZoomControls.d.ts +3 -2
  37. package/esm/LinearGenomeView/components/HeaderZoomControls.js +67 -51
  38. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  39. package/esm/LinearGenomeView/components/Highlight.js +19 -23
  40. package/esm/LinearGenomeView/components/HighlightBand.d.ts +3 -2
  41. package/esm/LinearGenomeView/components/HighlightBand.js +25 -8
  42. package/esm/LinearGenomeView/components/HighlightChip.d.ts +9 -0
  43. package/esm/LinearGenomeView/components/HighlightChip.js +15 -0
  44. package/esm/LinearGenomeView/components/HoverPositionHighlight.d.ts +12 -0
  45. package/esm/LinearGenomeView/components/HoverPositionHighlight.js +25 -0
  46. package/esm/LinearGenomeView/components/ImportForm.d.ts +3 -4
  47. package/esm/LinearGenomeView/components/ImportForm.js +95 -61
  48. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
  49. package/esm/LinearGenomeView/components/LinearGenomeView.js +6 -5
  50. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +1 -1
  51. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +89 -30
  52. package/esm/LinearGenomeView/components/MiniControls.d.ts +1 -1
  53. package/esm/LinearGenomeView/components/MiniControls.js +13 -10
  54. package/esm/LinearGenomeView/components/MotifListPanel.d.ts +3 -0
  55. package/esm/LinearGenomeView/components/MotifListPanel.js +59 -0
  56. package/esm/LinearGenomeView/components/NavigationAnnouncer.d.ts +32 -0
  57. package/esm/LinearGenomeView/components/NavigationAnnouncer.js +51 -0
  58. package/esm/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -1
  59. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +1 -1
  60. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +2 -4
  61. package/esm/LinearGenomeView/components/OverviewHighlight.js +23 -44
  62. package/esm/LinearGenomeView/components/OverviewHighlightBand.d.ts +9 -0
  63. package/esm/LinearGenomeView/components/OverviewHighlightBand.js +26 -0
  64. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +3 -3
  65. package/esm/LinearGenomeView/components/OverviewRubberband.js +44 -57
  66. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +4 -5
  67. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +13 -20
  68. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +3 -2
  69. package/esm/LinearGenomeView/components/OverviewScalebar.js +84 -79
  70. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +19 -5
  71. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +55 -32
  72. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +4 -5
  73. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +16 -18
  74. package/esm/LinearGenomeView/components/PaddingBlocks.d.ts +7 -0
  75. package/esm/LinearGenomeView/components/PaddingBlocks.js +61 -0
  76. package/esm/LinearGenomeView/components/RangeSelectOverlay.d.ts +9 -0
  77. package/esm/LinearGenomeView/components/RangeSelectOverlay.js +20 -0
  78. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +2 -3
  79. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +19 -26
  80. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
  81. package/esm/LinearGenomeView/components/Rubberband.js +13 -16
  82. package/esm/LinearGenomeView/components/SVGHighlightBand.d.ts +10 -0
  83. package/esm/LinearGenomeView/components/SVGHighlightBand.js +9 -0
  84. package/esm/LinearGenomeView/components/Scalebar.d.ts +2 -2
  85. package/esm/LinearGenomeView/components/Scalebar.js +16 -21
  86. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  87. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +54 -35
  88. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  89. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +142 -126
  90. package/esm/LinearGenomeView/components/SearchBox.d.ts +22 -2
  91. package/esm/LinearGenomeView/components/SearchBox.js +58 -66
  92. package/esm/LinearGenomeView/components/SearchPanelForm.d.ts +9 -0
  93. package/esm/LinearGenomeView/components/SearchPanelForm.js +18 -0
  94. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +3 -3
  95. package/esm/LinearGenomeView/components/SearchResultsDialog.js +5 -7
  96. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +4 -3
  97. package/esm/LinearGenomeView/components/SearchResultsTable.js +45 -53
  98. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.d.ts +5 -0
  99. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.js +37 -0
  100. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.d.ts +2 -0
  101. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.js +5 -0
  102. package/esm/LinearGenomeView/components/SequencePatternPanel.d.ts +3 -0
  103. package/esm/LinearGenomeView/components/SequencePatternPanel.js +42 -0
  104. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -2
  105. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +31 -53
  106. package/esm/LinearGenomeView/components/StrandCheckboxes.d.ts +8 -0
  107. package/esm/LinearGenomeView/components/StrandCheckboxes.js +13 -0
  108. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  109. package/esm/LinearGenomeView/components/TrackContainer.js +83 -39
  110. package/esm/LinearGenomeView/components/TrackLabel.d.ts +2 -3
  111. package/esm/LinearGenomeView/components/TrackLabel.js +11 -24
  112. package/esm/LinearGenomeView/components/TrackLabelButtons.d.ts +7 -0
  113. package/esm/LinearGenomeView/components/TrackLabelButtons.js +33 -0
  114. package/esm/LinearGenomeView/components/TrackLabelDragHandle.d.ts +2 -5
  115. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +6 -2
  116. package/esm/LinearGenomeView/components/TrackLabelMenu.d.ts +1 -1
  117. package/esm/LinearGenomeView/components/TrackLabelMenu.js +32 -85
  118. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.d.ts +22 -0
  119. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.js +46 -0
  120. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -1
  121. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +72 -18
  122. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  123. package/esm/LinearGenomeView/components/TracksContainer.js +65 -32
  124. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +1 -1
  125. package/esm/LinearGenomeView/components/VerticalGuide.js +6 -13
  126. package/esm/LinearGenomeView/components/ZoomButton.d.ts +7 -0
  127. package/esm/LinearGenomeView/components/ZoomButton.js +27 -0
  128. package/esm/LinearGenomeView/components/ZoomTransform.d.ts +9 -0
  129. package/esm/LinearGenomeView/components/ZoomTransform.js +37 -0
  130. package/esm/LinearGenomeView/components/defaultMotifs.d.ts +1 -0
  131. package/esm/LinearGenomeView/components/defaultMotifs.js +22 -0
  132. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -8
  133. package/esm/LinearGenomeView/components/fetchSequence.js +17 -9
  134. package/esm/LinearGenomeView/components/recentLocationsMenu.d.ts +15 -0
  135. package/esm/LinearGenomeView/components/recentLocationsMenu.js +36 -0
  136. package/esm/LinearGenomeView/components/searchModes.d.ts +13 -0
  137. package/esm/LinearGenomeView/components/searchModes.js +22 -0
  138. package/esm/LinearGenomeView/components/trackLabelMenuItems.d.ts +7 -0
  139. package/esm/LinearGenomeView/components/trackLabelMenuItems.js +67 -0
  140. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +11 -66
  141. package/esm/LinearGenomeView/components/useRangeSelect.js +82 -91
  142. package/esm/LinearGenomeView/components/useSearchBoxPrefs.d.ts +26 -0
  143. package/esm/LinearGenomeView/components/useSearchBoxPrefs.js +58 -0
  144. package/esm/LinearGenomeView/components/useSideScroll.d.ts +1 -1
  145. package/esm/LinearGenomeView/components/useSideScroll.js +87 -19
  146. package/esm/LinearGenomeView/components/util.d.ts +20 -6
  147. package/esm/LinearGenomeView/components/util.js +27 -6
  148. package/esm/LinearGenomeView/consts.d.ts +7 -2
  149. package/esm/LinearGenomeView/consts.js +18 -2
  150. package/esm/LinearGenomeView/flyTo.d.ts +38 -0
  151. package/esm/LinearGenomeView/flyTo.js +135 -0
  152. package/esm/LinearGenomeView/headerFit.d.ts +27 -0
  153. package/esm/LinearGenomeView/headerFit.js +59 -0
  154. package/esm/LinearGenomeView/index.d.ts +32 -2
  155. package/esm/LinearGenomeView/index.js +16 -6
  156. package/esm/LinearGenomeView/initKeys.d.ts +12 -0
  157. package/esm/LinearGenomeView/initKeys.js +68 -0
  158. package/esm/LinearGenomeView/keyboardHandler.d.ts +7 -0
  159. package/esm/LinearGenomeView/keyboardHandler.js +10 -0
  160. package/esm/LinearGenomeView/launchKeys.d.ts +2 -0
  161. package/esm/LinearGenomeView/launchKeys.js +23 -0
  162. package/esm/LinearGenomeView/lazyDialogs.d.ts +7 -11
  163. package/esm/LinearGenomeView/lazyDialogs.js +3 -3
  164. package/esm/LinearGenomeView/linkedViewSync.d.ts +20 -0
  165. package/esm/LinearGenomeView/linkedViewSync.js +58 -0
  166. package/esm/LinearGenomeView/menuItems.d.ts +27 -2
  167. package/esm/LinearGenomeView/menuItems.js +137 -101
  168. package/esm/LinearGenomeView/model.d.ts +3238 -136
  169. package/esm/LinearGenomeView/model.js +2425 -528
  170. package/esm/LinearGenomeView/sharedScaleContainer.d.ts +18 -0
  171. package/esm/LinearGenomeView/sharedScaleContainer.js +17 -0
  172. package/esm/LinearGenomeView/showRegionsWithUndo.d.ts +35 -0
  173. package/esm/LinearGenomeView/showRegionsWithUndo.js +44 -0
  174. package/esm/LinearGenomeView/stickyChrome.d.ts +19 -0
  175. package/esm/LinearGenomeView/stickyChrome.js +30 -0
  176. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts +1 -1
  177. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +15 -16
  178. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +2 -3
  179. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +45 -33
  180. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.d.ts +5 -0
  181. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.js +26 -0
  182. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.d.ts +5 -0
  183. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.js +13 -0
  184. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +1 -3
  185. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +77 -41
  186. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -1
  187. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +23 -3
  188. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.d.ts +8 -0
  189. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.js +37 -0
  190. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +3 -3
  191. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +64 -36
  192. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -1
  193. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +7 -5
  194. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +5 -3
  195. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +43 -7
  196. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +8 -14
  197. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +16 -21
  198. package/esm/LinearGenomeView/svgcomponents/SVGView.d.ts +18 -0
  199. package/esm/LinearGenomeView/svgcomponents/SVGView.js +13 -0
  200. package/esm/LinearGenomeView/svgcomponents/figureContract.d.ts +45 -0
  201. package/esm/LinearGenomeView/svgcomponents/figureContract.js +130 -0
  202. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.d.ts +76 -0
  203. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.js +66 -0
  204. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.d.ts +70 -0
  205. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.js +263 -0
  206. package/esm/LinearGenomeView/svgcomponents/util.d.ts +92 -5
  207. package/esm/LinearGenomeView/svgcomponents/util.js +236 -3
  208. package/esm/LinearGenomeView/types.d.ts +17 -31
  209. package/esm/LinearGenomeView/types.js +1 -0
  210. package/esm/LinearGenomeView/util.d.ts +332 -12
  211. package/esm/LinearGenomeView/util.js +606 -62
  212. package/esm/MultiLevelRubberband/MultiLevelRubberband.d.ts +6 -0
  213. package/esm/MultiLevelRubberband/MultiLevelRubberband.js +37 -0
  214. package/esm/MultiLevelRubberband/VerticalGuide.d.ts +6 -0
  215. package/esm/MultiLevelRubberband/VerticalGuide.js +21 -0
  216. package/esm/MultiLevelRubberband/index.d.ts +2 -0
  217. package/esm/MultiLevelRubberband/index.js +1 -0
  218. package/esm/MultiLevelRubberband/types.d.ts +6 -0
  219. package/esm/MultiLevelRubberband/useRangeSelect.d.ts +24 -0
  220. package/esm/MultiLevelRubberband/useRangeSelect.js +136 -0
  221. package/esm/displayKitTests/perRegionTestEnv.d.ts +1286 -0
  222. package/esm/displayKitTests/perRegionTestEnv.js +138 -0
  223. package/esm/index.d.ts +122 -1235
  224. package/esm/index.js +101 -24
  225. package/esm/lazyPluginExports.d.ts +23 -0
  226. package/esm/lazyPluginExports.js +36 -0
  227. package/esm/searchUtils.d.ts +55 -11
  228. package/esm/searchUtils.js +342 -45
  229. package/esm/shared/RubberbandSpan.d.ts +15 -0
  230. package/esm/shared/RubberbandSpan.js +33 -0
  231. package/esm/shared/coordLabels.d.ts +40 -0
  232. package/esm/shared/coordLabels.js +119 -0
  233. package/package.json +18 -19
  234. package/esm/BaseLinearDisplay/SVGLegend.d.ts +0 -6
  235. package/esm/BaseLinearDisplay/SVGLegend.js +0 -17
  236. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +0 -2
  237. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +0 -11
  238. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  239. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -53
  240. package/esm/BaseLinearDisplay/components/Block.d.ts +0 -14
  241. package/esm/BaseLinearDisplay/components/Block.js +0 -45
  242. package/esm/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  243. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +0 -22
  244. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  245. package/esm/BaseLinearDisplay/components/BlockMsg.js +0 -26
  246. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +0 -9
  247. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +0 -42
  248. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +0 -11
  249. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +0 -40
  250. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +0 -19
  251. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +0 -45
  252. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +0 -5
  253. package/esm/BaseLinearDisplay/components/FloatingLabels.js +0 -75
  254. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +0 -8
  255. package/esm/BaseLinearDisplay/components/FloatingLegend.js +0 -43
  256. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -5
  257. package/esm/BaseLinearDisplay/components/LinearBlocks.js +0 -23
  258. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +0 -5
  259. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +0 -49
  260. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +0 -4
  261. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +0 -26
  262. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +0 -8
  263. package/esm/BaseLinearDisplay/components/MenuPage.js +0 -24
  264. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +0 -21
  265. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +0 -52
  266. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +0 -12
  267. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +0 -22
  268. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -12
  269. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -18
  270. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  271. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +0 -20
  272. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +0 -13
  273. package/esm/BaseLinearDisplay/components/Tooltip.js +0 -22
  274. package/esm/BaseLinearDisplay/components/types.d.ts +0 -1
  275. package/esm/BaseLinearDisplay/components/util.d.ts +0 -21
  276. package/esm/BaseLinearDisplay/components/util.js +0 -107
  277. package/esm/BaseLinearDisplay/index.d.ts +0 -17
  278. package/esm/BaseLinearDisplay/index.js +0 -13
  279. package/esm/BaseLinearDisplay/model.d.ts +0 -1197
  280. package/esm/BaseLinearDisplay/model.js +0 -432
  281. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  282. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -113
  283. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +0 -26
  284. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +0 -57
  285. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.d.ts +0 -8
  286. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.js +0 -19
  287. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  288. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +0 -31
  289. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  290. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -29
  291. package/esm/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  292. package/esm/BaseLinearDisplay/models/configSchema.js +0 -33
  293. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -98
  294. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -242
  295. package/esm/BaseLinearDisplay/models/util.d.ts +0 -9
  296. package/esm/BaseLinearDisplay/models/util.js +0 -43
  297. package/esm/BaseLinearDisplay/renderSvg.d.ts +0 -3
  298. package/esm/BaseLinearDisplay/renderSvg.js +0 -63
  299. package/esm/BaseLinearDisplay/types.d.ts +0 -43
  300. package/esm/BaseLinearDisplay/types.js +0 -3
  301. package/esm/BaseLinearDisplay/util.d.ts +0 -16
  302. package/esm/BaseLinearDisplay/util.js +0 -71
  303. package/esm/BasicTrack/configSchema.d.ts +0 -85
  304. package/esm/BasicTrack/configSchema.js +0 -8
  305. package/esm/BasicTrack/index.d.ts +0 -2
  306. package/esm/BasicTrack/index.js +0 -12
  307. package/esm/LinearBareDisplay/configSchema.d.ts +0 -32
  308. package/esm/LinearBareDisplay/configSchema.js +0 -11
  309. package/esm/LinearBareDisplay/index.d.ts +0 -4
  310. package/esm/LinearBareDisplay/index.js +0 -20
  311. package/esm/LinearBareDisplay/model.d.ts +0 -1196
  312. package/esm/LinearBareDisplay/model.js +0 -32
  313. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +0 -5
  314. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +0 -9
  315. package/esm/LinearBasicDisplay/configSchema.d.ts +0 -32
  316. package/esm/LinearBasicDisplay/configSchema.js +0 -11
  317. package/esm/LinearBasicDisplay/index.d.ts +0 -4
  318. package/esm/LinearBasicDisplay/index.js +0 -20
  319. package/esm/LinearBasicDisplay/model.d.ts +0 -1391
  320. package/esm/LinearBasicDisplay/model.js +0 -158
  321. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.d.ts +0 -9
  322. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.js +0 -58
  323. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  324. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.js +0 -26
  325. package/esm/LinearFeatureDisplay/configSchema.d.ts +0 -32
  326. package/esm/LinearFeatureDisplay/configSchema.js +0 -11
  327. package/esm/LinearFeatureDisplay/index.d.ts +0 -3
  328. package/esm/LinearFeatureDisplay/index.js +0 -2
  329. package/esm/LinearFeatureDisplay/model.d.ts +0 -1443
  330. package/esm/LinearFeatureDisplay/model.js +0 -305
  331. package/esm/LinearGenomeView/SVGErrorBox.d.ts +0 -5
  332. package/esm/LinearGenomeView/SVGErrorBox.js +0 -4
  333. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  334. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -27
  335. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -5
  336. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -13
  337. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  338. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -17
  339. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  340. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -8
  341. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  342. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -101
  343. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  344. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -45
  345. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  346. package/esm/LinearGenomeView/components/RubberbandSpan.js +0 -32
  347. package/esm/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  348. package/esm/LinearGenomeView/components/RubberbandTooltip.js +0 -17
  349. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  350. package/esm/LinearGenomeView/components/TrackLabelContainer.js +0 -25
  351. package/esm/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  352. package/esm/LinearGenomeView/components/useWheelScroll.js +0 -69
  353. package/esm/LinearGenomeView/svgExportUtil.d.ts +0 -9
  354. package/esm/LinearGenomeView/svgExportUtil.js +0 -6
  355. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  356. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +0 -7
  357. /package/esm/{BaseLinearDisplay/components → MultiLevelRubberband}/types.js +0 -0
@@ -1,17 +0,0 @@
1
- import { jsx as _jsx } from "react/jsx-runtime";
2
- import { Tooltip } from '@mui/material';
3
- export default function RubberbandTooltip({ anchorEl, side, text, }) {
4
- return (_jsx(Tooltip, { title: text, open: true, placement: side === 'left' ? 'left-start' : 'right-start', slotProps: {
5
- popper: {
6
- anchorEl,
7
- modifiers: [
8
- {
9
- name: 'offset',
10
- options: {
11
- offset: [-30, -10],
12
- },
13
- },
14
- ],
15
- },
16
- }, children: _jsx("span", {}) }));
17
- }
@@ -1,8 +0,0 @@
1
- import type { LinearGenomeViewModel } from '../index.ts';
2
- import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
3
- type LGV = LinearGenomeViewModel;
4
- declare const TrackLabelContainer: ({ track, view, }: {
5
- track: BaseTrackModel;
6
- view: LGV;
7
- }) => import("react/jsx-runtime").JSX.Element | null;
8
- export default TrackLabelContainer;
@@ -1,25 +0,0 @@
1
- import { jsx as _jsx } from "react/jsx-runtime";
2
- import { cx, makeStyles } from '@jbrowse/core/util/tss-react';
3
- import { observer } from 'mobx-react';
4
- import TrackLabel from "./TrackLabel.js";
5
- const useStyles = makeStyles()({
6
- trackLabel: {
7
- zIndex: 2,
8
- },
9
- trackLabelOffset: {
10
- position: 'relative',
11
- display: 'inline-block',
12
- },
13
- trackLabelOverlap: {
14
- position: 'absolute',
15
- },
16
- });
17
- const TrackLabelContainer = observer(function TrackLabelContainer({ track, view, }) {
18
- const { classes } = useStyles();
19
- const display = track.displays[0];
20
- const labelStyle = view.trackLabelsSetting !== 'overlapping' || display.prefersOffset
21
- ? classes.trackLabelOffset
22
- : classes.trackLabelOverlap;
23
- return view.trackLabelsSetting !== 'hidden' ? (_jsx(TrackLabel, { track: track, className: cx(classes.trackLabel, labelStyle) })) : null;
24
- });
25
- export default TrackLabelContainer;
@@ -1,7 +0,0 @@
1
- import type React from 'react';
2
- export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement | null>, model: {
3
- bpPerPx: number;
4
- zoomTo: (arg: number, arg2?: number) => void;
5
- setScaleFactor: (arg: number) => void;
6
- horizontalScroll: (arg: number) => void;
7
- }): void;
@@ -1,69 +0,0 @@
1
- import { useEffect, useRef } from 'react';
2
- import { sum } from '@jbrowse/core/util';
3
- export function useWheelScroll(ref, model) {
4
- const zoomDelta = useRef(0);
5
- const scrollDelta = useRef(0);
6
- const timeout = useRef(null);
7
- const rafId = useRef(0);
8
- const scheduled = useRef(false);
9
- useEffect(() => {
10
- let samples = [];
11
- const curr = ref.current;
12
- function onWheel(event) {
13
- if (event.ctrlKey) {
14
- event.preventDefault();
15
- samples.push(event.deltaY);
16
- const averageDeltaY = Math.abs(sum(samples)) / samples.length;
17
- const normalizer = averageDeltaY < 6
18
- ? 25
19
- : averageDeltaY > 30
20
- ? averageDeltaY > 150
21
- ? 500
22
- : 150
23
- : 75;
24
- zoomDelta.current += event.deltaY / normalizer;
25
- model.setScaleFactor(zoomDelta.current < 0
26
- ? 1 - zoomDelta.current
27
- : 1 / (1 + zoomDelta.current));
28
- if (timeout.current) {
29
- clearTimeout(timeout.current);
30
- }
31
- timeout.current = setTimeout(() => {
32
- model.setScaleFactor(1);
33
- model.zoomTo(zoomDelta.current > 0
34
- ? model.bpPerPx * (1 + zoomDelta.current)
35
- : model.bpPerPx / (1 - zoomDelta.current), event.clientX - (curr?.getBoundingClientRect().left || 0));
36
- zoomDelta.current = 0;
37
- samples = [];
38
- }, 300);
39
- }
40
- else {
41
- if (Math.abs(event.deltaX) > Math.abs(2 * event.deltaY)) {
42
- event.preventDefault();
43
- }
44
- scrollDelta.current += event.deltaX;
45
- if (!scheduled.current) {
46
- scheduled.current = true;
47
- rafId.current = window.requestAnimationFrame(() => {
48
- model.horizontalScroll(scrollDelta.current);
49
- scrollDelta.current = 0;
50
- scheduled.current = false;
51
- });
52
- }
53
- }
54
- }
55
- if (curr) {
56
- curr.addEventListener('wheel', onWheel, { passive: false });
57
- return () => {
58
- curr.removeEventListener('wheel', onWheel);
59
- if (timeout.current) {
60
- clearTimeout(timeout.current);
61
- }
62
- if (rafId.current) {
63
- cancelAnimationFrame(rafId.current);
64
- }
65
- };
66
- }
67
- return () => { };
68
- }, [model, ref]);
69
- }
@@ -1,9 +0,0 @@
1
- export declare function isReadyOrHasError(display: {
2
- renderProps(): {
3
- notReady?: boolean;
4
- };
5
- error?: unknown;
6
- }): boolean;
7
- export declare function hasAnySubDisplayError(displays: {
8
- error?: unknown;
9
- }[]): boolean;
@@ -1,6 +0,0 @@
1
- export function isReadyOrHasError(display) {
2
- return !display.renderProps().notReady || !!display.error;
3
- }
4
- export function hasAnySubDisplayError(displays) {
5
- return displays.some(d => !!d.error);
6
- }
@@ -1,5 +0,0 @@
1
- export default function SVGBackground({ width, height, shift, }: {
2
- width: number;
3
- height: number;
4
- shift: number;
5
- }): import("react/jsx-runtime").JSX.Element;
@@ -1,7 +0,0 @@
1
- import { jsx as _jsx } from "react/jsx-runtime";
2
- import { stripAlpha } from '@jbrowse/core/util';
3
- import { useTheme } from '@mui/material';
4
- export default function SVGBackground({ width, height, shift, }) {
5
- const theme = useTheme();
6
- return (_jsx("rect", { width: width + shift * 2, height: height, fill: stripAlpha(theme.palette.background.default) }));
7
- }