@jbrowse/plugin-linear-genome-view 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (357) hide show
  1. package/esm/FeatureTrack/configSchema.d.ts +104 -65
  2. package/esm/FeatureTrack/configSchema.js +47 -1
  3. package/esm/FeatureTrack/index.js +1 -1
  4. package/esm/LaunchLinearGenomeView/index.d.ts +14 -0
  5. package/esm/LaunchLinearGenomeView/index.js +6 -12
  6. package/esm/LinearGenomeView/afterAttach.d.ts +20 -2
  7. package/esm/LinearGenomeView/afterAttach.js +250 -121
  8. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -1
  9. package/esm/LinearGenomeView/components/CenterLine.js +16 -7
  10. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.d.ts +7 -0
  11. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.js +22 -0
  12. package/esm/LinearGenomeView/components/CrisprGuidePanel.d.ts +3 -0
  13. package/esm/LinearGenomeView/components/CrisprGuidePanel.js +144 -0
  14. package/esm/LinearGenomeView/components/Cytobands.d.ts +6 -6
  15. package/esm/LinearGenomeView/components/Cytobands.js +76 -53
  16. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +7 -3
  17. package/esm/LinearGenomeView/components/ExportSvgDialog.js +11 -67
  18. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +5 -9
  19. package/esm/LinearGenomeView/components/GetSequenceDialog.js +84 -88
  20. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -1
  21. package/esm/LinearGenomeView/components/Gridlines.js +29 -58
  22. package/esm/LinearGenomeView/components/Header.d.ts +1 -1
  23. package/esm/LinearGenomeView/components/Header.js +32 -16
  24. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.d.ts +21 -0
  25. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.js +35 -0
  26. package/esm/LinearGenomeView/components/HeaderPanControls.d.ts +3 -2
  27. package/esm/LinearGenomeView/components/HeaderPanControls.js +16 -7
  28. package/esm/LinearGenomeView/components/HeaderRegionWidth.d.ts +1 -1
  29. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +9 -6
  30. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.d.ts +6 -0
  31. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.js +27 -0
  32. package/esm/LinearGenomeView/components/HeaderSearchBoxes.d.ts +5 -0
  33. package/esm/LinearGenomeView/components/HeaderSearchBoxes.js +28 -0
  34. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +3 -2
  35. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +11 -4
  36. package/esm/LinearGenomeView/components/HeaderZoomControls.d.ts +3 -2
  37. package/esm/LinearGenomeView/components/HeaderZoomControls.js +67 -51
  38. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  39. package/esm/LinearGenomeView/components/Highlight.js +19 -23
  40. package/esm/LinearGenomeView/components/HighlightBand.d.ts +3 -2
  41. package/esm/LinearGenomeView/components/HighlightBand.js +25 -8
  42. package/esm/LinearGenomeView/components/HighlightChip.d.ts +9 -0
  43. package/esm/LinearGenomeView/components/HighlightChip.js +15 -0
  44. package/esm/LinearGenomeView/components/HoverPositionHighlight.d.ts +12 -0
  45. package/esm/LinearGenomeView/components/HoverPositionHighlight.js +25 -0
  46. package/esm/LinearGenomeView/components/ImportForm.d.ts +3 -4
  47. package/esm/LinearGenomeView/components/ImportForm.js +95 -61
  48. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
  49. package/esm/LinearGenomeView/components/LinearGenomeView.js +6 -5
  50. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +1 -1
  51. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +89 -30
  52. package/esm/LinearGenomeView/components/MiniControls.d.ts +1 -1
  53. package/esm/LinearGenomeView/components/MiniControls.js +13 -10
  54. package/esm/LinearGenomeView/components/MotifListPanel.d.ts +3 -0
  55. package/esm/LinearGenomeView/components/MotifListPanel.js +59 -0
  56. package/esm/LinearGenomeView/components/NavigationAnnouncer.d.ts +32 -0
  57. package/esm/LinearGenomeView/components/NavigationAnnouncer.js +51 -0
  58. package/esm/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -1
  59. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +1 -1
  60. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +2 -4
  61. package/esm/LinearGenomeView/components/OverviewHighlight.js +23 -44
  62. package/esm/LinearGenomeView/components/OverviewHighlightBand.d.ts +9 -0
  63. package/esm/LinearGenomeView/components/OverviewHighlightBand.js +26 -0
  64. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +3 -3
  65. package/esm/LinearGenomeView/components/OverviewRubberband.js +44 -57
  66. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +4 -5
  67. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +13 -20
  68. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +3 -2
  69. package/esm/LinearGenomeView/components/OverviewScalebar.js +84 -79
  70. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +19 -5
  71. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +55 -32
  72. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +4 -5
  73. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +16 -18
  74. package/esm/LinearGenomeView/components/PaddingBlocks.d.ts +7 -0
  75. package/esm/LinearGenomeView/components/PaddingBlocks.js +61 -0
  76. package/esm/LinearGenomeView/components/RangeSelectOverlay.d.ts +9 -0
  77. package/esm/LinearGenomeView/components/RangeSelectOverlay.js +20 -0
  78. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +2 -3
  79. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +19 -26
  80. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
  81. package/esm/LinearGenomeView/components/Rubberband.js +13 -16
  82. package/esm/LinearGenomeView/components/SVGHighlightBand.d.ts +10 -0
  83. package/esm/LinearGenomeView/components/SVGHighlightBand.js +9 -0
  84. package/esm/LinearGenomeView/components/Scalebar.d.ts +2 -2
  85. package/esm/LinearGenomeView/components/Scalebar.js +16 -21
  86. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  87. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +54 -35
  88. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  89. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +142 -126
  90. package/esm/LinearGenomeView/components/SearchBox.d.ts +22 -2
  91. package/esm/LinearGenomeView/components/SearchBox.js +58 -66
  92. package/esm/LinearGenomeView/components/SearchPanelForm.d.ts +9 -0
  93. package/esm/LinearGenomeView/components/SearchPanelForm.js +18 -0
  94. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +3 -3
  95. package/esm/LinearGenomeView/components/SearchResultsDialog.js +5 -7
  96. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +4 -3
  97. package/esm/LinearGenomeView/components/SearchResultsTable.js +45 -53
  98. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.d.ts +5 -0
  99. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.js +37 -0
  100. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.d.ts +2 -0
  101. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.js +5 -0
  102. package/esm/LinearGenomeView/components/SequencePatternPanel.d.ts +3 -0
  103. package/esm/LinearGenomeView/components/SequencePatternPanel.js +42 -0
  104. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -2
  105. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +31 -53
  106. package/esm/LinearGenomeView/components/StrandCheckboxes.d.ts +8 -0
  107. package/esm/LinearGenomeView/components/StrandCheckboxes.js +13 -0
  108. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  109. package/esm/LinearGenomeView/components/TrackContainer.js +83 -39
  110. package/esm/LinearGenomeView/components/TrackLabel.d.ts +2 -3
  111. package/esm/LinearGenomeView/components/TrackLabel.js +11 -24
  112. package/esm/LinearGenomeView/components/TrackLabelButtons.d.ts +7 -0
  113. package/esm/LinearGenomeView/components/TrackLabelButtons.js +33 -0
  114. package/esm/LinearGenomeView/components/TrackLabelDragHandle.d.ts +2 -5
  115. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +6 -2
  116. package/esm/LinearGenomeView/components/TrackLabelMenu.d.ts +1 -1
  117. package/esm/LinearGenomeView/components/TrackLabelMenu.js +32 -85
  118. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.d.ts +22 -0
  119. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.js +46 -0
  120. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -1
  121. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +72 -18
  122. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  123. package/esm/LinearGenomeView/components/TracksContainer.js +65 -32
  124. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +1 -1
  125. package/esm/LinearGenomeView/components/VerticalGuide.js +6 -13
  126. package/esm/LinearGenomeView/components/ZoomButton.d.ts +7 -0
  127. package/esm/LinearGenomeView/components/ZoomButton.js +27 -0
  128. package/esm/LinearGenomeView/components/ZoomTransform.d.ts +9 -0
  129. package/esm/LinearGenomeView/components/ZoomTransform.js +37 -0
  130. package/esm/LinearGenomeView/components/defaultMotifs.d.ts +1 -0
  131. package/esm/LinearGenomeView/components/defaultMotifs.js +22 -0
  132. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -8
  133. package/esm/LinearGenomeView/components/fetchSequence.js +17 -9
  134. package/esm/LinearGenomeView/components/recentLocationsMenu.d.ts +15 -0
  135. package/esm/LinearGenomeView/components/recentLocationsMenu.js +36 -0
  136. package/esm/LinearGenomeView/components/searchModes.d.ts +13 -0
  137. package/esm/LinearGenomeView/components/searchModes.js +22 -0
  138. package/esm/LinearGenomeView/components/trackLabelMenuItems.d.ts +7 -0
  139. package/esm/LinearGenomeView/components/trackLabelMenuItems.js +67 -0
  140. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +11 -66
  141. package/esm/LinearGenomeView/components/useRangeSelect.js +82 -91
  142. package/esm/LinearGenomeView/components/useSearchBoxPrefs.d.ts +26 -0
  143. package/esm/LinearGenomeView/components/useSearchBoxPrefs.js +58 -0
  144. package/esm/LinearGenomeView/components/useSideScroll.d.ts +1 -1
  145. package/esm/LinearGenomeView/components/useSideScroll.js +87 -19
  146. package/esm/LinearGenomeView/components/util.d.ts +20 -6
  147. package/esm/LinearGenomeView/components/util.js +27 -6
  148. package/esm/LinearGenomeView/consts.d.ts +7 -2
  149. package/esm/LinearGenomeView/consts.js +18 -2
  150. package/esm/LinearGenomeView/flyTo.d.ts +38 -0
  151. package/esm/LinearGenomeView/flyTo.js +135 -0
  152. package/esm/LinearGenomeView/headerFit.d.ts +27 -0
  153. package/esm/LinearGenomeView/headerFit.js +59 -0
  154. package/esm/LinearGenomeView/index.d.ts +32 -2
  155. package/esm/LinearGenomeView/index.js +16 -6
  156. package/esm/LinearGenomeView/initKeys.d.ts +12 -0
  157. package/esm/LinearGenomeView/initKeys.js +68 -0
  158. package/esm/LinearGenomeView/keyboardHandler.d.ts +7 -0
  159. package/esm/LinearGenomeView/keyboardHandler.js +10 -0
  160. package/esm/LinearGenomeView/launchKeys.d.ts +2 -0
  161. package/esm/LinearGenomeView/launchKeys.js +23 -0
  162. package/esm/LinearGenomeView/lazyDialogs.d.ts +7 -11
  163. package/esm/LinearGenomeView/lazyDialogs.js +3 -3
  164. package/esm/LinearGenomeView/linkedViewSync.d.ts +20 -0
  165. package/esm/LinearGenomeView/linkedViewSync.js +58 -0
  166. package/esm/LinearGenomeView/menuItems.d.ts +27 -2
  167. package/esm/LinearGenomeView/menuItems.js +137 -101
  168. package/esm/LinearGenomeView/model.d.ts +3238 -136
  169. package/esm/LinearGenomeView/model.js +2425 -528
  170. package/esm/LinearGenomeView/sharedScaleContainer.d.ts +18 -0
  171. package/esm/LinearGenomeView/sharedScaleContainer.js +17 -0
  172. package/esm/LinearGenomeView/showRegionsWithUndo.d.ts +35 -0
  173. package/esm/LinearGenomeView/showRegionsWithUndo.js +44 -0
  174. package/esm/LinearGenomeView/stickyChrome.d.ts +19 -0
  175. package/esm/LinearGenomeView/stickyChrome.js +30 -0
  176. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts +1 -1
  177. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +15 -16
  178. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +2 -3
  179. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +45 -33
  180. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.d.ts +5 -0
  181. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.js +26 -0
  182. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.d.ts +5 -0
  183. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.js +13 -0
  184. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +1 -3
  185. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +77 -41
  186. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -1
  187. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +23 -3
  188. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.d.ts +8 -0
  189. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.js +37 -0
  190. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +3 -3
  191. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +64 -36
  192. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -1
  193. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +7 -5
  194. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +5 -3
  195. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +43 -7
  196. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +8 -14
  197. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +16 -21
  198. package/esm/LinearGenomeView/svgcomponents/SVGView.d.ts +18 -0
  199. package/esm/LinearGenomeView/svgcomponents/SVGView.js +13 -0
  200. package/esm/LinearGenomeView/svgcomponents/figureContract.d.ts +45 -0
  201. package/esm/LinearGenomeView/svgcomponents/figureContract.js +130 -0
  202. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.d.ts +76 -0
  203. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.js +66 -0
  204. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.d.ts +70 -0
  205. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.js +263 -0
  206. package/esm/LinearGenomeView/svgcomponents/util.d.ts +92 -5
  207. package/esm/LinearGenomeView/svgcomponents/util.js +236 -3
  208. package/esm/LinearGenomeView/types.d.ts +17 -31
  209. package/esm/LinearGenomeView/types.js +1 -0
  210. package/esm/LinearGenomeView/util.d.ts +332 -12
  211. package/esm/LinearGenomeView/util.js +606 -62
  212. package/esm/MultiLevelRubberband/MultiLevelRubberband.d.ts +6 -0
  213. package/esm/MultiLevelRubberband/MultiLevelRubberband.js +37 -0
  214. package/esm/MultiLevelRubberband/VerticalGuide.d.ts +6 -0
  215. package/esm/MultiLevelRubberband/VerticalGuide.js +21 -0
  216. package/esm/MultiLevelRubberband/index.d.ts +2 -0
  217. package/esm/MultiLevelRubberband/index.js +1 -0
  218. package/esm/MultiLevelRubberband/types.d.ts +6 -0
  219. package/esm/MultiLevelRubberband/useRangeSelect.d.ts +24 -0
  220. package/esm/MultiLevelRubberband/useRangeSelect.js +136 -0
  221. package/esm/displayKitTests/perRegionTestEnv.d.ts +1286 -0
  222. package/esm/displayKitTests/perRegionTestEnv.js +138 -0
  223. package/esm/index.d.ts +122 -1235
  224. package/esm/index.js +101 -24
  225. package/esm/lazyPluginExports.d.ts +23 -0
  226. package/esm/lazyPluginExports.js +36 -0
  227. package/esm/searchUtils.d.ts +55 -11
  228. package/esm/searchUtils.js +342 -45
  229. package/esm/shared/RubberbandSpan.d.ts +15 -0
  230. package/esm/shared/RubberbandSpan.js +33 -0
  231. package/esm/shared/coordLabels.d.ts +40 -0
  232. package/esm/shared/coordLabels.js +119 -0
  233. package/package.json +18 -19
  234. package/esm/BaseLinearDisplay/SVGLegend.d.ts +0 -6
  235. package/esm/BaseLinearDisplay/SVGLegend.js +0 -17
  236. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +0 -2
  237. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +0 -11
  238. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  239. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -53
  240. package/esm/BaseLinearDisplay/components/Block.d.ts +0 -14
  241. package/esm/BaseLinearDisplay/components/Block.js +0 -45
  242. package/esm/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  243. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +0 -22
  244. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  245. package/esm/BaseLinearDisplay/components/BlockMsg.js +0 -26
  246. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +0 -9
  247. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +0 -42
  248. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +0 -11
  249. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +0 -40
  250. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +0 -19
  251. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +0 -45
  252. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +0 -5
  253. package/esm/BaseLinearDisplay/components/FloatingLabels.js +0 -75
  254. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +0 -8
  255. package/esm/BaseLinearDisplay/components/FloatingLegend.js +0 -43
  256. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -5
  257. package/esm/BaseLinearDisplay/components/LinearBlocks.js +0 -23
  258. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +0 -5
  259. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +0 -49
  260. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +0 -4
  261. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +0 -26
  262. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +0 -8
  263. package/esm/BaseLinearDisplay/components/MenuPage.js +0 -24
  264. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +0 -21
  265. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +0 -52
  266. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +0 -12
  267. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +0 -22
  268. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -12
  269. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -18
  270. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  271. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +0 -20
  272. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +0 -13
  273. package/esm/BaseLinearDisplay/components/Tooltip.js +0 -22
  274. package/esm/BaseLinearDisplay/components/types.d.ts +0 -1
  275. package/esm/BaseLinearDisplay/components/util.d.ts +0 -21
  276. package/esm/BaseLinearDisplay/components/util.js +0 -107
  277. package/esm/BaseLinearDisplay/index.d.ts +0 -17
  278. package/esm/BaseLinearDisplay/index.js +0 -13
  279. package/esm/BaseLinearDisplay/model.d.ts +0 -1197
  280. package/esm/BaseLinearDisplay/model.js +0 -432
  281. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  282. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -113
  283. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +0 -26
  284. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +0 -57
  285. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.d.ts +0 -8
  286. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.js +0 -19
  287. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  288. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +0 -31
  289. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  290. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -29
  291. package/esm/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  292. package/esm/BaseLinearDisplay/models/configSchema.js +0 -33
  293. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -98
  294. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -242
  295. package/esm/BaseLinearDisplay/models/util.d.ts +0 -9
  296. package/esm/BaseLinearDisplay/models/util.js +0 -43
  297. package/esm/BaseLinearDisplay/renderSvg.d.ts +0 -3
  298. package/esm/BaseLinearDisplay/renderSvg.js +0 -63
  299. package/esm/BaseLinearDisplay/types.d.ts +0 -43
  300. package/esm/BaseLinearDisplay/types.js +0 -3
  301. package/esm/BaseLinearDisplay/util.d.ts +0 -16
  302. package/esm/BaseLinearDisplay/util.js +0 -71
  303. package/esm/BasicTrack/configSchema.d.ts +0 -85
  304. package/esm/BasicTrack/configSchema.js +0 -8
  305. package/esm/BasicTrack/index.d.ts +0 -2
  306. package/esm/BasicTrack/index.js +0 -12
  307. package/esm/LinearBareDisplay/configSchema.d.ts +0 -32
  308. package/esm/LinearBareDisplay/configSchema.js +0 -11
  309. package/esm/LinearBareDisplay/index.d.ts +0 -4
  310. package/esm/LinearBareDisplay/index.js +0 -20
  311. package/esm/LinearBareDisplay/model.d.ts +0 -1196
  312. package/esm/LinearBareDisplay/model.js +0 -32
  313. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +0 -5
  314. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +0 -9
  315. package/esm/LinearBasicDisplay/configSchema.d.ts +0 -32
  316. package/esm/LinearBasicDisplay/configSchema.js +0 -11
  317. package/esm/LinearBasicDisplay/index.d.ts +0 -4
  318. package/esm/LinearBasicDisplay/index.js +0 -20
  319. package/esm/LinearBasicDisplay/model.d.ts +0 -1391
  320. package/esm/LinearBasicDisplay/model.js +0 -158
  321. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.d.ts +0 -9
  322. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.js +0 -58
  323. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  324. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.js +0 -26
  325. package/esm/LinearFeatureDisplay/configSchema.d.ts +0 -32
  326. package/esm/LinearFeatureDisplay/configSchema.js +0 -11
  327. package/esm/LinearFeatureDisplay/index.d.ts +0 -3
  328. package/esm/LinearFeatureDisplay/index.js +0 -2
  329. package/esm/LinearFeatureDisplay/model.d.ts +0 -1443
  330. package/esm/LinearFeatureDisplay/model.js +0 -305
  331. package/esm/LinearGenomeView/SVGErrorBox.d.ts +0 -5
  332. package/esm/LinearGenomeView/SVGErrorBox.js +0 -4
  333. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  334. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -27
  335. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -5
  336. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -13
  337. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  338. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -17
  339. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  340. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -8
  341. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  342. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -101
  343. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  344. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -45
  345. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  346. package/esm/LinearGenomeView/components/RubberbandSpan.js +0 -32
  347. package/esm/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  348. package/esm/LinearGenomeView/components/RubberbandTooltip.js +0 -17
  349. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  350. package/esm/LinearGenomeView/components/TrackLabelContainer.js +0 -25
  351. package/esm/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  352. package/esm/LinearGenomeView/components/useWheelScroll.js +0 -69
  353. package/esm/LinearGenomeView/svgExportUtil.d.ts +0 -9
  354. package/esm/LinearGenomeView/svgExportUtil.js +0 -6
  355. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  356. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +0 -7
  357. /package/esm/{BaseLinearDisplay/components → MultiLevelRubberband}/types.js +0 -0
@@ -1,1391 +0,0 @@
1
- import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
2
- import type { MenuItem, SubMenuItem } from '@jbrowse/core/ui';
3
- import type { Instance } from '@jbrowse/mobx-state-tree';
4
- declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
5
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
7
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
8
- } & {
9
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
10
- } & {
11
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
12
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
13
- } & {
14
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
15
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
16
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
17
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
18
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
- }, {
21
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
22
- filled: boolean;
23
- reactElement: React.ReactElement | undefined;
24
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
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- blockStatusMessage: string;
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- error: unknown;
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- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
31
- model: {
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- error?: unknown;
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- reload: () => void;
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- message?: React.ReactNode;
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- statusMessage?: string;
36
- reactElement?: React.ReactElement;
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- isRenderingPending?: boolean;
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- displayHeight?: number;
39
- };
40
- }) => import("react/jsx-runtime").JSX.Element;
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- renderProps: any;
42
- renderArgs: Record<string, unknown> | undefined;
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- isRenderingPending: boolean;
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- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
45
- } & {
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- doReload(): void;
47
- setStatusMessage(message: string): void;
48
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
49
- setMessage(messageText: string): void;
50
- setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
51
- setError(error: unknown): void;
52
- reload(): void;
53
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
54
- beforeDestroy(): void;
55
- } & {
56
- readonly statusMessage: any;
57
- readonly displayHeight: number | undefined;
58
- } & {
59
- afterAttach(): void;
60
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
61
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
62
- maxFeatureScreenDensity: {
63
- type: string;
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- description: string;
65
- defaultValue: number;
66
- };
67
- fetchSizeLimit: {
68
- type: string;
69
- defaultValue: number;
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- description: string;
71
- };
72
- height: {
73
- type: string;
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- defaultValue: number;
75
- description: string;
76
- };
77
- mouseover: {
78
- type: string;
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- description: string;
80
- defaultValue: string;
81
- contextVariable: string[];
82
- };
83
- jexlFilters: {
84
- type: string;
85
- description: string;
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- defaultValue: never[];
87
- };
88
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
89
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
90
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
91
- } & {
92
- type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearFeatureDisplay">;
93
- trackShowLabels: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
94
- trackShowDescriptions: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
95
- trackDisplayMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
96
- trackMaxHeight: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
97
- configuration: AnyConfigurationSchemaType;
98
- jexlFiltersSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
99
- } & {
100
- type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
101
- trackGeneGlyphMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
102
- trackSubfeatureLabels: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
103
- trackDisplayDirectionalChevrons: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
104
- configuration: AnyConfigurationSchemaType;
105
- }, {
106
- rendererTypeName: string;
107
- error: unknown;
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- statusMessage: string | undefined;
109
- } & {
110
- readonly RenderingComponent: React.FC<{
111
- model: {
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- id: string;
113
- type: string;
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- rpcDriverName: string | undefined;
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- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
116
- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
119
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
120
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
121
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
123
- }, {
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- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
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- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
128
- onHorizontalScroll?: () => void;
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- blockState?: Record<string, any>;
130
- }>;
131
- readonly DisplayBlurb: React.FC<{
132
- model: {
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- id: string;
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- type: string;
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- rpcDriverName: string | undefined;
136
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
137
- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
140
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
141
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
142
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
144
- }, {
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- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
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- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
149
- }> | null;
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- readonly adapterConfig: any;
151
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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- readonly isMinimized: boolean;
153
- readonly parentDisplay: any;
154
- readonly effectiveRpcDriverName: any;
155
- } & {
156
- renderProps(): any;
157
- renderingProps(): {
158
- displayModel: {
159
- id: string;
160
- type: string;
161
- rpcDriverName: string | undefined;
162
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
163
- rendererTypeName: string;
164
- error: unknown;
165
- statusMessage: string | undefined;
166
- } & {
167
- readonly RenderingComponent: React.FC<{
168
- model: {
169
- id: string;
170
- type: string;
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- rpcDriverName: string | undefined;
172
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
173
- rendererTypeName: string;
174
- error: unknown;
175
- statusMessage: string | undefined;
176
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
177
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
178
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
180
- }, {
181
- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
184
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
185
- onHorizontalScroll?: () => void;
186
- blockState?: Record<string, any>;
187
- }>;
188
- readonly DisplayBlurb: React.FC<{
189
- model: {
190
- id: string;
191
- type: string;
192
- rpcDriverName: string | undefined;
193
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
194
- rendererTypeName: string;
195
- error: unknown;
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- statusMessage: string | undefined;
197
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
198
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
201
- }, {
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- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
205
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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- }> | null;
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- readonly adapterConfig: any;
208
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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- readonly isMinimized: boolean;
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- readonly parentDisplay: any;
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- readonly effectiveRpcDriverName: any;
212
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
213
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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- }, {
217
- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
220
- } & {
221
- readonly RenderingComponent: React.FC<{
222
- model: {
223
- id: string;
224
- type: string;
225
- rpcDriverName: string | undefined;
226
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
227
- rendererTypeName: string;
228
- error: unknown;
229
- statusMessage: string | undefined;
230
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
231
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
232
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
233
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
234
- }, {
235
- rendererTypeName: string;
236
- error: unknown;
237
- statusMessage: string | undefined;
238
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
239
- onHorizontalScroll?: () => void;
240
- blockState?: Record<string, any>;
241
- }>;
242
- readonly DisplayBlurb: React.FC<{
243
- model: {
244
- id: string;
245
- type: string;
246
- rpcDriverName: string | undefined;
247
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
248
- rendererTypeName: string;
249
- error: unknown;
250
- statusMessage: string | undefined;
251
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
252
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
253
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
254
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
255
- }, {
256
- rendererTypeName: string;
257
- error: unknown;
258
- statusMessage: string | undefined;
259
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
260
- }> | null;
261
- readonly adapterConfig: any;
262
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
263
- readonly isMinimized: boolean;
264
- readonly parentDisplay: any;
265
- readonly effectiveRpcDriverName: any;
266
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
267
- };
268
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
269
- readonly DisplayMessageComponent: undefined | React.FC<any>;
270
- trackMenuItems(): MenuItem[];
271
- readonly viewMenuActions: MenuItem[];
272
- regionCannotBeRendered(): null;
273
- } & {
274
- setStatusMessage(arg?: string): void;
275
- setError(error?: unknown): void;
276
- setRpcDriverName(rpcDriverName: string): void;
277
- reload(): void;
278
- } & {
279
- scrollTop: number;
280
- } & {
281
- readonly height: number;
282
- } & {
283
- setScrollTop(scrollTop: number): void;
284
- setHeight(displayHeight: number): number;
285
- resizeHeight(distance: number): number;
286
- } & {
287
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
288
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
289
- currStatsBpPerPx: number;
290
- } & {
291
- readonly currentBytesRequested: number;
292
- readonly currentFeatureScreenDensity: number;
293
- readonly maxFeatureScreenDensity: any;
294
- readonly featureDensityStatsReady: boolean;
295
- readonly maxAllowableBytes: number;
296
- } & {
297
- afterAttach(): void;
298
- } & {
299
- setCurrStatsBpPerPx(n: number): void;
300
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
301
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
302
- setFeatureDensityStatsP(arg: any): void;
303
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
304
- clearFeatureDensityStats(): void;
305
- } & {
306
- readonly regionTooLarge: boolean;
307
- readonly regionTooLargeReason: string;
308
- } & {
309
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
310
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
311
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
312
- } & {
313
- mouseoverExtraInformation: string | undefined;
314
- featureIdUnderMouse: undefined | string;
315
- subfeatureIdUnderMouse: undefined | string;
316
- contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
317
- } & {
318
- readonly DisplayMessageComponent: undefined | React.FC<any>;
319
- readonly blockType: "staticBlocks" | "dynamicBlocks";
320
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
321
- } & {
322
- readonly renderDelay: number;
323
- readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
324
- legendItems(_theme?: import("@mui/material").Theme): import("../index.ts").LegendItem[];
325
- svgLegendWidth(theme?: import("@mui/material").Theme): number;
326
- readonly selectedFeatureId: string | undefined;
327
- readonly featureWidgetType: {
328
- type: string;
329
- id: string;
330
- };
331
- } & {
332
- readonly showTooltipsEnabled: boolean;
333
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
334
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
335
- getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
336
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("../BaseLinearDisplay/types.ts").LayoutRecord>;
337
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
338
- getFeatureByID(blockKey: string, id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
339
- searchFeatureByID(id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
340
- readonly floatingLabelData: Map<string, import("../BaseLinearDisplay/components/util.ts").FeatureLabelData>;
341
- } & {
342
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
343
- deleteBlock(key: string): void;
344
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
345
- navToFeature(feature: import("@jbrowse/core/util").Feature): void;
346
- clearFeatureSelection(): void;
347
- setFeatureIdUnderMouse(feature?: string): void;
348
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
349
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
350
- setMouseoverExtraInformation(extra?: string): void;
351
- setShowLegend(s: boolean): void;
352
- setShowTooltips(arg: boolean): void;
353
- } & {
354
- reload(): Promise<void>;
355
- } & {
356
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
357
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
358
- } & {
359
- trackMenuItems(): MenuItem[];
360
- contextMenuItems(): MenuItem[];
361
- renderingProps(): {
362
- displayModel: {
363
- id: string;
364
- type: string;
365
- rpcDriverName: string | undefined;
366
- heightPreConfig: number | undefined;
367
- userBpPerPxLimit: number | undefined;
368
- userByteSizeLimit: number | undefined;
369
- blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
370
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
371
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
372
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
373
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
374
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
375
- }, {
376
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
377
- filled: boolean;
378
- reactElement: React.ReactElement | undefined;
379
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
380
- layout: any;
381
- blockStatusMessage: string;
382
- error: unknown;
383
- message: string | undefined;
384
- maxHeightReached: boolean;
385
- ReactComponent: ({ model, }: {
386
- model: {
387
- error?: unknown;
388
- reload: () => void;
389
- message?: React.ReactNode;
390
- statusMessage?: string;
391
- reactElement?: React.ReactElement;
392
- isRenderingPending?: boolean;
393
- displayHeight?: number;
394
- };
395
- }) => import("react/jsx-runtime").JSX.Element;
396
- renderProps: any;
397
- renderArgs: Record<string, unknown> | undefined;
398
- isRenderingPending: boolean;
399
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
400
- } & {
401
- doReload(): void;
402
- setStatusMessage(message: string): void;
403
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
404
- setMessage(messageText: string): void;
405
- setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
406
- setError(error: unknown): void;
407
- reload(): void;
408
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
409
- beforeDestroy(): void;
410
- } & {
411
- readonly statusMessage: any;
412
- readonly displayHeight: number | undefined;
413
- } & {
414
- afterAttach(): void;
415
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
416
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
417
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
418
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
419
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
420
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
421
- }, {
422
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
423
- filled: boolean;
424
- reactElement: React.ReactElement | undefined;
425
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
426
- layout: any;
427
- blockStatusMessage: string;
428
- error: unknown;
429
- message: string | undefined;
430
- maxHeightReached: boolean;
431
- ReactComponent: ({ model, }: {
432
- model: {
433
- error?: unknown;
434
- reload: () => void;
435
- message?: React.ReactNode;
436
- statusMessage?: string;
437
- reactElement?: React.ReactElement;
438
- isRenderingPending?: boolean;
439
- displayHeight?: number;
440
- };
441
- }) => import("react/jsx-runtime").JSX.Element;
442
- renderProps: any;
443
- renderArgs: Record<string, unknown> | undefined;
444
- isRenderingPending: boolean;
445
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
446
- } & {
447
- doReload(): void;
448
- setStatusMessage(message: string): void;
449
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
450
- setMessage(messageText: string): void;
451
- setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
452
- setError(error: unknown): void;
453
- reload(): void;
454
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
455
- beforeDestroy(): void;
456
- } & {
457
- readonly statusMessage: any;
458
- readonly displayHeight: number | undefined;
459
- } & {
460
- afterAttach(): void;
461
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
462
- configuration: {
463
- [x: string]: any;
464
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
465
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
466
- [x: string]: any;
467
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
468
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
469
- [x: string]: any;
470
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
471
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
472
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
473
- maxFeatureScreenDensity: {
474
- type: string;
475
- description: string;
476
- defaultValue: number;
477
- };
478
- fetchSizeLimit: {
479
- type: string;
480
- defaultValue: number;
481
- description: string;
482
- };
483
- height: {
484
- type: string;
485
- defaultValue: number;
486
- description: string;
487
- };
488
- mouseover: {
489
- type: string;
490
- description: string;
491
- defaultValue: string;
492
- contextVariable: string[];
493
- };
494
- jexlFilters: {
495
- type: string;
496
- description: string;
497
- defaultValue: never[];
498
- };
499
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
500
- showLegend: boolean | undefined;
501
- showTooltips: boolean | undefined;
502
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
503
- rendererTypeName: string;
504
- error: unknown;
505
- statusMessage: string | undefined;
506
- } & {
507
- readonly RenderingComponent: React.FC<{
508
- model: {
509
- id: string;
510
- type: string;
511
- rpcDriverName: string | undefined;
512
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
513
- rendererTypeName: string;
514
- error: unknown;
515
- statusMessage: string | undefined;
516
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
517
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
518
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
519
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
520
- }, {
521
- rendererTypeName: string;
522
- error: unknown;
523
- statusMessage: string | undefined;
524
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
525
- onHorizontalScroll?: () => void;
526
- blockState?: Record<string, any>;
527
- }>;
528
- readonly DisplayBlurb: React.FC<{
529
- model: {
530
- id: string;
531
- type: string;
532
- rpcDriverName: string | undefined;
533
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
534
- rendererTypeName: string;
535
- error: unknown;
536
- statusMessage: string | undefined;
537
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
538
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
539
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
540
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
541
- }, {
542
- rendererTypeName: string;
543
- error: unknown;
544
- statusMessage: string | undefined;
545
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
546
- }> | null;
547
- readonly adapterConfig: any;
548
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
549
- readonly isMinimized: boolean;
550
- readonly parentDisplay: any;
551
- readonly effectiveRpcDriverName: any;
552
- } & {
553
- renderProps(): any;
554
- renderingProps(): {
555
- displayModel: {
556
- id: string;
557
- type: string;
558
- rpcDriverName: string | undefined;
559
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
560
- rendererTypeName: string;
561
- error: unknown;
562
- statusMessage: string | undefined;
563
- } & {
564
- readonly RenderingComponent: React.FC<{
565
- model: {
566
- id: string;
567
- type: string;
568
- rpcDriverName: string | undefined;
569
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
570
- rendererTypeName: string;
571
- error: unknown;
572
- statusMessage: string | undefined;
573
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
574
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
575
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
576
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
577
- }, {
578
- rendererTypeName: string;
579
- error: unknown;
580
- statusMessage: string | undefined;
581
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
582
- onHorizontalScroll?: () => void;
583
- blockState?: Record<string, any>;
584
- }>;
585
- readonly DisplayBlurb: React.FC<{
586
- model: {
587
- id: string;
588
- type: string;
589
- rpcDriverName: string | undefined;
590
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
591
- rendererTypeName: string;
592
- error: unknown;
593
- statusMessage: string | undefined;
594
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
595
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
596
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
597
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
598
- }, {
599
- rendererTypeName: string;
600
- error: unknown;
601
- statusMessage: string | undefined;
602
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
603
- }> | null;
604
- readonly adapterConfig: any;
605
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
606
- readonly isMinimized: boolean;
607
- readonly parentDisplay: any;
608
- readonly effectiveRpcDriverName: any;
609
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
610
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
611
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
612
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
613
- }, {
614
- rendererTypeName: string;
615
- error: unknown;
616
- statusMessage: string | undefined;
617
- } & {
618
- readonly RenderingComponent: React.FC<{
619
- model: {
620
- id: string;
621
- type: string;
622
- rpcDriverName: string | undefined;
623
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
624
- rendererTypeName: string;
625
- error: unknown;
626
- statusMessage: string | undefined;
627
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
628
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
629
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
630
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
631
- }, {
632
- rendererTypeName: string;
633
- error: unknown;
634
- statusMessage: string | undefined;
635
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
636
- onHorizontalScroll?: () => void;
637
- blockState?: Record<string, any>;
638
- }>;
639
- readonly DisplayBlurb: React.FC<{
640
- model: {
641
- id: string;
642
- type: string;
643
- rpcDriverName: string | undefined;
644
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
645
- rendererTypeName: string;
646
- error: unknown;
647
- statusMessage: string | undefined;
648
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
649
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
650
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
651
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
652
- }, {
653
- rendererTypeName: string;
654
- error: unknown;
655
- statusMessage: string | undefined;
656
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
657
- }> | null;
658
- readonly adapterConfig: any;
659
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
660
- readonly isMinimized: boolean;
661
- readonly parentDisplay: any;
662
- readonly effectiveRpcDriverName: any;
663
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
664
- };
665
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
666
- readonly DisplayMessageComponent: undefined | React.FC<any>;
667
- trackMenuItems(): MenuItem[];
668
- readonly viewMenuActions: MenuItem[];
669
- regionCannotBeRendered(): null;
670
- } & {
671
- setStatusMessage(arg?: string): void;
672
- setError(error?: unknown): void;
673
- setRpcDriverName(rpcDriverName: string): void;
674
- reload(): void;
675
- } & {
676
- scrollTop: number;
677
- } & {
678
- readonly height: number;
679
- } & {
680
- setScrollTop(scrollTop: number): void;
681
- setHeight(displayHeight: number): number;
682
- resizeHeight(distance: number): number;
683
- } & {
684
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
685
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
686
- currStatsBpPerPx: number;
687
- } & {
688
- readonly currentBytesRequested: number;
689
- readonly currentFeatureScreenDensity: number;
690
- readonly maxFeatureScreenDensity: any;
691
- readonly featureDensityStatsReady: boolean;
692
- readonly maxAllowableBytes: number;
693
- } & {
694
- afterAttach(): void;
695
- } & {
696
- setCurrStatsBpPerPx(n: number): void;
697
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
698
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
699
- setFeatureDensityStatsP(arg: any): void;
700
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
701
- clearFeatureDensityStats(): void;
702
- } & {
703
- readonly regionTooLarge: boolean;
704
- readonly regionTooLargeReason: string;
705
- } & {
706
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
707
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
708
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
709
- } & {
710
- mouseoverExtraInformation: string | undefined;
711
- featureIdUnderMouse: undefined | string;
712
- subfeatureIdUnderMouse: undefined | string;
713
- contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
714
- } & {
715
- readonly DisplayMessageComponent: undefined | React.FC<any>;
716
- readonly blockType: "staticBlocks" | "dynamicBlocks";
717
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
718
- } & {
719
- readonly renderDelay: number;
720
- readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
721
- legendItems(_theme?: import("@mui/material").Theme): import("../index.ts").LegendItem[];
722
- svgLegendWidth(theme?: import("@mui/material").Theme): number;
723
- readonly selectedFeatureId: string | undefined;
724
- readonly featureWidgetType: {
725
- type: string;
726
- id: string;
727
- };
728
- } & {
729
- readonly showTooltipsEnabled: boolean;
730
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
731
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
732
- getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
733
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("../BaseLinearDisplay/types.ts").LayoutRecord>;
734
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
735
- getFeatureByID(blockKey: string, id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
736
- searchFeatureByID(id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
737
- readonly floatingLabelData: Map<string, import("../BaseLinearDisplay/components/util.ts").FeatureLabelData>;
738
- } & {
739
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
740
- deleteBlock(key: string): void;
741
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
742
- navToFeature(feature: import("@jbrowse/core/util").Feature): void;
743
- clearFeatureSelection(): void;
744
- setFeatureIdUnderMouse(feature?: string): void;
745
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
746
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
747
- setMouseoverExtraInformation(extra?: string): void;
748
- setShowLegend(s: boolean): void;
749
- setShowTooltips(arg: boolean): void;
750
- } & {
751
- reload(): Promise<void>;
752
- } & {
753
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
754
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
755
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
756
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
757
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
758
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
759
- } & {
760
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
761
- } & {
762
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
763
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
764
- } & {
765
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
766
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
767
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
768
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
769
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
770
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
771
- }, {
772
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
773
- filled: boolean;
774
- reactElement: React.ReactElement | undefined;
775
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
776
- layout: any;
777
- blockStatusMessage: string;
778
- error: unknown;
779
- message: string | undefined;
780
- maxHeightReached: boolean;
781
- ReactComponent: ({ model, }: {
782
- model: {
783
- error?: unknown;
784
- reload: () => void;
785
- message?: React.ReactNode;
786
- statusMessage?: string;
787
- reactElement?: React.ReactElement;
788
- isRenderingPending?: boolean;
789
- displayHeight?: number;
790
- };
791
- }) => import("react/jsx-runtime").JSX.Element;
792
- renderProps: any;
793
- renderArgs: Record<string, unknown> | undefined;
794
- isRenderingPending: boolean;
795
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
796
- } & {
797
- doReload(): void;
798
- setStatusMessage(message: string): void;
799
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
800
- setMessage(messageText: string): void;
801
- setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
802
- setError(error: unknown): void;
803
- reload(): void;
804
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
805
- beforeDestroy(): void;
806
- } & {
807
- readonly statusMessage: any;
808
- readonly displayHeight: number | undefined;
809
- } & {
810
- afterAttach(): void;
811
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
812
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
813
- maxFeatureScreenDensity: {
814
- type: string;
815
- description: string;
816
- defaultValue: number;
817
- };
818
- fetchSizeLimit: {
819
- type: string;
820
- defaultValue: number;
821
- description: string;
822
- };
823
- height: {
824
- type: string;
825
- defaultValue: number;
826
- description: string;
827
- };
828
- mouseover: {
829
- type: string;
830
- description: string;
831
- defaultValue: string;
832
- contextVariable: string[];
833
- };
834
- jexlFilters: {
835
- type: string;
836
- description: string;
837
- defaultValue: never[];
838
- };
839
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
840
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
841
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
842
- }, {
843
- rendererTypeName: string;
844
- error: unknown;
845
- statusMessage: string | undefined;
846
- } & {
847
- readonly RenderingComponent: React.FC<{
848
- model: {
849
- id: string;
850
- type: string;
851
- rpcDriverName: string | undefined;
852
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
853
- rendererTypeName: string;
854
- error: unknown;
855
- statusMessage: string | undefined;
856
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
857
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
858
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
859
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
860
- }, {
861
- rendererTypeName: string;
862
- error: unknown;
863
- statusMessage: string | undefined;
864
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
865
- onHorizontalScroll?: () => void;
866
- blockState?: Record<string, any>;
867
- }>;
868
- readonly DisplayBlurb: React.FC<{
869
- model: {
870
- id: string;
871
- type: string;
872
- rpcDriverName: string | undefined;
873
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
874
- rendererTypeName: string;
875
- error: unknown;
876
- statusMessage: string | undefined;
877
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
878
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
879
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
880
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
881
- }, {
882
- rendererTypeName: string;
883
- error: unknown;
884
- statusMessage: string | undefined;
885
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
886
- }> | null;
887
- readonly adapterConfig: any;
888
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
889
- readonly isMinimized: boolean;
890
- readonly parentDisplay: any;
891
- readonly effectiveRpcDriverName: any;
892
- } & {
893
- renderProps(): any;
894
- renderingProps(): {
895
- displayModel: {
896
- id: string;
897
- type: string;
898
- rpcDriverName: string | undefined;
899
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
900
- rendererTypeName: string;
901
- error: unknown;
902
- statusMessage: string | undefined;
903
- } & {
904
- readonly RenderingComponent: React.FC<{
905
- model: {
906
- id: string;
907
- type: string;
908
- rpcDriverName: string | undefined;
909
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
910
- rendererTypeName: string;
911
- error: unknown;
912
- statusMessage: string | undefined;
913
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
914
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
915
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
916
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
917
- }, {
918
- rendererTypeName: string;
919
- error: unknown;
920
- statusMessage: string | undefined;
921
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
922
- onHorizontalScroll?: () => void;
923
- blockState?: Record<string, any>;
924
- }>;
925
- readonly DisplayBlurb: React.FC<{
926
- model: {
927
- id: string;
928
- type: string;
929
- rpcDriverName: string | undefined;
930
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
931
- rendererTypeName: string;
932
- error: unknown;
933
- statusMessage: string | undefined;
934
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
935
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
936
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
937
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
938
- }, {
939
- rendererTypeName: string;
940
- error: unknown;
941
- statusMessage: string | undefined;
942
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
943
- }> | null;
944
- readonly adapterConfig: any;
945
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
946
- readonly isMinimized: boolean;
947
- readonly parentDisplay: any;
948
- readonly effectiveRpcDriverName: any;
949
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
950
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
951
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
952
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
953
- }, {
954
- rendererTypeName: string;
955
- error: unknown;
956
- statusMessage: string | undefined;
957
- } & {
958
- readonly RenderingComponent: React.FC<{
959
- model: {
960
- id: string;
961
- type: string;
962
- rpcDriverName: string | undefined;
963
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
964
- rendererTypeName: string;
965
- error: unknown;
966
- statusMessage: string | undefined;
967
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
968
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
969
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
970
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
971
- }, {
972
- rendererTypeName: string;
973
- error: unknown;
974
- statusMessage: string | undefined;
975
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
976
- onHorizontalScroll?: () => void;
977
- blockState?: Record<string, any>;
978
- }>;
979
- readonly DisplayBlurb: React.FC<{
980
- model: {
981
- id: string;
982
- type: string;
983
- rpcDriverName: string | undefined;
984
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
985
- rendererTypeName: string;
986
- error: unknown;
987
- statusMessage: string | undefined;
988
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
989
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
990
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
991
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
992
- }, {
993
- rendererTypeName: string;
994
- error: unknown;
995
- statusMessage: string | undefined;
996
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
997
- }> | null;
998
- readonly adapterConfig: any;
999
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1000
- readonly isMinimized: boolean;
1001
- readonly parentDisplay: any;
1002
- readonly effectiveRpcDriverName: any;
1003
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1004
- };
1005
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1006
- readonly DisplayMessageComponent: undefined | React.FC<any>;
1007
- trackMenuItems(): MenuItem[];
1008
- readonly viewMenuActions: MenuItem[];
1009
- regionCannotBeRendered(): null;
1010
- } & {
1011
- setStatusMessage(arg?: string): void;
1012
- setError(error?: unknown): void;
1013
- setRpcDriverName(rpcDriverName: string): void;
1014
- reload(): void;
1015
- } & {
1016
- scrollTop: number;
1017
- } & {
1018
- readonly height: number;
1019
- } & {
1020
- setScrollTop(scrollTop: number): void;
1021
- setHeight(displayHeight: number): number;
1022
- resizeHeight(distance: number): number;
1023
- } & {
1024
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1025
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1026
- currStatsBpPerPx: number;
1027
- } & {
1028
- readonly currentBytesRequested: number;
1029
- readonly currentFeatureScreenDensity: number;
1030
- readonly maxFeatureScreenDensity: any;
1031
- readonly featureDensityStatsReady: boolean;
1032
- readonly maxAllowableBytes: number;
1033
- } & {
1034
- afterAttach(): void;
1035
- } & {
1036
- setCurrStatsBpPerPx(n: number): void;
1037
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1038
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1039
- setFeatureDensityStatsP(arg: any): void;
1040
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1041
- clearFeatureDensityStats(): void;
1042
- } & {
1043
- readonly regionTooLarge: boolean;
1044
- readonly regionTooLargeReason: string;
1045
- } & {
1046
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1047
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1048
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1049
- } & {
1050
- mouseoverExtraInformation: string | undefined;
1051
- featureIdUnderMouse: undefined | string;
1052
- subfeatureIdUnderMouse: undefined | string;
1053
- contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1054
- } & {
1055
- readonly DisplayMessageComponent: undefined | React.FC<any>;
1056
- readonly blockType: "staticBlocks" | "dynamicBlocks";
1057
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1058
- } & {
1059
- readonly renderDelay: number;
1060
- readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1061
- legendItems(_theme?: import("@mui/material").Theme): import("../index.ts").LegendItem[];
1062
- svgLegendWidth(theme?: import("@mui/material").Theme): number;
1063
- readonly selectedFeatureId: string | undefined;
1064
- readonly featureWidgetType: {
1065
- type: string;
1066
- id: string;
1067
- };
1068
- } & {
1069
- readonly showTooltipsEnabled: boolean;
1070
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1071
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1072
- getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1073
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("../BaseLinearDisplay/types.ts").LayoutRecord>;
1074
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1075
- getFeatureByID(blockKey: string, id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1076
- searchFeatureByID(id: string): import("../BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1077
- readonly floatingLabelData: Map<string, import("../BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1078
- } & {
1079
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1080
- deleteBlock(key: string): void;
1081
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1082
- navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1083
- clearFeatureSelection(): void;
1084
- setFeatureIdUnderMouse(feature?: string): void;
1085
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1086
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1087
- setMouseoverExtraInformation(extra?: string): void;
1088
- setShowLegend(s: boolean): void;
1089
- setShowTooltips(arg: boolean): void;
1090
- } & {
1091
- reload(): Promise<void>;
1092
- } & {
1093
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1094
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1095
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1096
- onMouseMove(_: unknown, featureId?: string): void;
1097
- onMouseLeave(_: unknown): void;
1098
- onContextMenu(_: unknown): void;
1099
- onFeatureClick(_: unknown, featureId?: string): void;
1100
- };
1101
- renderProps(): any;
1102
- } & {
1103
- renderSvg(opts: import("../index.ts").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
1104
- afterAttach(): void;
1105
- } & {
1106
- featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
1107
- } & {
1108
- activeFilters(): string[];
1109
- readonly rendererTypeName: any;
1110
- readonly sequenceAdapter: any;
1111
- readonly showLabels: any;
1112
- readonly showDescriptions: any;
1113
- readonly maxHeight: any;
1114
- readonly displayMode: any;
1115
- } & {
1116
- readonly rendererConfig: {
1117
- showLabels: any;
1118
- showDescriptions: any;
1119
- displayMode: any;
1120
- maxHeight: any;
1121
- };
1122
- } & {
1123
- setJexlFilters(f?: string[]): void;
1124
- setFeatureUnderMouse(feat?: import("@jbrowse/core/util").Feature): void;
1125
- toggleShowLabels(): void;
1126
- toggleShowDescriptions(): void;
1127
- setDisplayMode(val: string): void;
1128
- setMaxHeight(val?: number): void;
1129
- } & {
1130
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1131
- } & {
1132
- renderProps(): {
1133
- config: {
1134
- showLabels: any;
1135
- showDescriptions: any;
1136
- displayMode: any;
1137
- maxHeight: any;
1138
- };
1139
- filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
1140
- sequenceAdapter: any;
1141
- };
1142
- renderingProps(): {
1143
- onFeatureClick(_: unknown, featureId?: string): Promise<void>;
1144
- onFeatureContextMenu(_: unknown, featureId?: string): Promise<void>;
1145
- displayModel: {
1146
- id: string;
1147
- type: string;
1148
- rpcDriverName: string | undefined;
1149
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1150
- rendererTypeName: string;
1151
- error: unknown;
1152
- statusMessage: string | undefined;
1153
- } & {
1154
- readonly RenderingComponent: React.FC<{
1155
- model: {
1156
- id: string;
1157
- type: string;
1158
- rpcDriverName: string | undefined;
1159
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1160
- rendererTypeName: string;
1161
- error: unknown;
1162
- statusMessage: string | undefined;
1163
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1164
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1165
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1166
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1167
- }, {
1168
- rendererTypeName: string;
1169
- error: unknown;
1170
- statusMessage: string | undefined;
1171
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1172
- onHorizontalScroll?: () => void;
1173
- blockState?: Record<string, any>;
1174
- }>;
1175
- readonly DisplayBlurb: React.FC<{
1176
- model: {
1177
- id: string;
1178
- type: string;
1179
- rpcDriverName: string | undefined;
1180
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1181
- rendererTypeName: string;
1182
- error: unknown;
1183
- statusMessage: string | undefined;
1184
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1185
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1186
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1187
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1188
- }, {
1189
- rendererTypeName: string;
1190
- error: unknown;
1191
- statusMessage: string | undefined;
1192
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1193
- }> | null;
1194
- readonly adapterConfig: any;
1195
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1196
- readonly isMinimized: boolean;
1197
- readonly parentDisplay: any;
1198
- readonly effectiveRpcDriverName: any;
1199
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1200
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1201
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1202
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1203
- }, {
1204
- rendererTypeName: string;
1205
- error: unknown;
1206
- statusMessage: string | undefined;
1207
- } & {
1208
- readonly RenderingComponent: React.FC<{
1209
- model: {
1210
- id: string;
1211
- type: string;
1212
- rpcDriverName: string | undefined;
1213
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1214
- rendererTypeName: string;
1215
- error: unknown;
1216
- statusMessage: string | undefined;
1217
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1218
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1219
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1220
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1221
- }, {
1222
- rendererTypeName: string;
1223
- error: unknown;
1224
- statusMessage: string | undefined;
1225
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1226
- onHorizontalScroll?: () => void;
1227
- blockState?: Record<string, any>;
1228
- }>;
1229
- readonly DisplayBlurb: React.FC<{
1230
- model: {
1231
- id: string;
1232
- type: string;
1233
- rpcDriverName: string | undefined;
1234
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1235
- rendererTypeName: string;
1236
- error: unknown;
1237
- statusMessage: string | undefined;
1238
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1239
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1240
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1241
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1242
- }, {
1243
- rendererTypeName: string;
1244
- error: unknown;
1245
- statusMessage: string | undefined;
1246
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1247
- }> | null;
1248
- readonly adapterConfig: any;
1249
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1250
- readonly isMinimized: boolean;
1251
- readonly parentDisplay: any;
1252
- readonly effectiveRpcDriverName: any;
1253
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1254
- };
1255
- filterMenuItems(): MenuItem[];
1256
- } & {
1257
- trackMenuItems(): MenuItem[];
1258
- } & {
1259
- afterAttach(): void;
1260
- } & {
1261
- readonly geneGlyphMode: any;
1262
- readonly subfeatureLabels: any;
1263
- readonly displayDirectionalChevrons: any;
1264
- } & {
1265
- readonly rendererConfig: {
1266
- showLabels: any;
1267
- showDescriptions: any;
1268
- subfeatureLabels: any;
1269
- displayMode: any;
1270
- maxHeight: any;
1271
- geneGlyphMode: any;
1272
- displayDirectionalChevrons: any;
1273
- };
1274
- } & {
1275
- setGeneGlyphMode(val: string): void;
1276
- setSubfeatureLabels(val: string): void;
1277
- toggleDisplayDirectionalChevrons(): void;
1278
- } & {
1279
- filterMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | SubMenuItem | {
1280
- label: string;
1281
- type: string;
1282
- checked: boolean;
1283
- onClick: () => void;
1284
- })[];
1285
- } & {
1286
- trackMenuItems(): MenuItem[];
1287
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
1288
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1289
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1290
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1291
- } & {
1292
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1293
- } & {
1294
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1295
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1296
- } & {
1297
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1298
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1299
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1300
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1301
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1302
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1303
- }, {
1304
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
1305
- filled: boolean;
1306
- reactElement: React.ReactElement | undefined;
1307
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1308
- layout: any;
1309
- blockStatusMessage: string;
1310
- error: unknown;
1311
- message: string | undefined;
1312
- maxHeightReached: boolean;
1313
- ReactComponent: ({ model, }: {
1314
- model: {
1315
- error?: unknown;
1316
- reload: () => void;
1317
- message?: React.ReactNode;
1318
- statusMessage?: string;
1319
- reactElement?: React.ReactElement;
1320
- isRenderingPending?: boolean;
1321
- displayHeight?: number;
1322
- };
1323
- }) => import("react/jsx-runtime").JSX.Element;
1324
- renderProps: any;
1325
- renderArgs: Record<string, unknown> | undefined;
1326
- isRenderingPending: boolean;
1327
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1328
- } & {
1329
- doReload(): void;
1330
- setStatusMessage(message: string): void;
1331
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1332
- setMessage(messageText: string): void;
1333
- setRendered(props: import("../BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1334
- setError(error: unknown): void;
1335
- reload(): void;
1336
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1337
- beforeDestroy(): void;
1338
- } & {
1339
- readonly statusMessage: any;
1340
- readonly displayHeight: number | undefined;
1341
- } & {
1342
- afterAttach(): void;
1343
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1344
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1345
- maxFeatureScreenDensity: {
1346
- type: string;
1347
- description: string;
1348
- defaultValue: number;
1349
- };
1350
- fetchSizeLimit: {
1351
- type: string;
1352
- defaultValue: number;
1353
- description: string;
1354
- };
1355
- height: {
1356
- type: string;
1357
- defaultValue: number;
1358
- description: string;
1359
- };
1360
- mouseover: {
1361
- type: string;
1362
- description: string;
1363
- defaultValue: string;
1364
- contextVariable: string[];
1365
- };
1366
- jexlFilters: {
1367
- type: string;
1368
- description: string;
1369
- defaultValue: never[];
1370
- };
1371
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1372
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1373
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1374
- } & {
1375
- type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearFeatureDisplay">;
1376
- trackShowLabels: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1377
- trackShowDescriptions: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1378
- trackDisplayMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1379
- trackMaxHeight: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1380
- configuration: AnyConfigurationSchemaType;
1381
- jexlFiltersSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
1382
- } & {
1383
- type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
1384
- trackGeneGlyphMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1385
- trackSubfeatureLabels: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1386
- trackDisplayDirectionalChevrons: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1387
- configuration: AnyConfigurationSchemaType;
1388
- }>>;
1389
- export type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
1390
- export type FeatureTrackModel = Instance<FeatureTrackStateModel>;
1391
- export default stateModelFactory;