@jbrowse/plugin-linear-genome-view 4.3.0 → 5.0.0-beta.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (357) hide show
  1. package/esm/FeatureTrack/configSchema.d.ts +104 -65
  2. package/esm/FeatureTrack/configSchema.js +47 -1
  3. package/esm/FeatureTrack/index.js +1 -1
  4. package/esm/LaunchLinearGenomeView/index.d.ts +14 -0
  5. package/esm/LaunchLinearGenomeView/index.js +6 -12
  6. package/esm/LinearGenomeView/afterAttach.d.ts +20 -2
  7. package/esm/LinearGenomeView/afterAttach.js +250 -121
  8. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -1
  9. package/esm/LinearGenomeView/components/CenterLine.js +16 -7
  10. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.d.ts +7 -0
  11. package/esm/LinearGenomeView/components/ConnectedHoverHighlight.js +22 -0
  12. package/esm/LinearGenomeView/components/CrisprGuidePanel.d.ts +3 -0
  13. package/esm/LinearGenomeView/components/CrisprGuidePanel.js +144 -0
  14. package/esm/LinearGenomeView/components/Cytobands.d.ts +6 -6
  15. package/esm/LinearGenomeView/components/Cytobands.js +76 -53
  16. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +7 -3
  17. package/esm/LinearGenomeView/components/ExportSvgDialog.js +11 -67
  18. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +5 -9
  19. package/esm/LinearGenomeView/components/GetSequenceDialog.js +84 -88
  20. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -1
  21. package/esm/LinearGenomeView/components/Gridlines.js +29 -58
  22. package/esm/LinearGenomeView/components/Header.d.ts +1 -1
  23. package/esm/LinearGenomeView/components/Header.js +32 -16
  24. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.d.ts +21 -0
  25. package/esm/LinearGenomeView/components/HeaderClearHighlightButton.js +35 -0
  26. package/esm/LinearGenomeView/components/HeaderPanControls.d.ts +3 -2
  27. package/esm/LinearGenomeView/components/HeaderPanControls.js +16 -7
  28. package/esm/LinearGenomeView/components/HeaderRegionWidth.d.ts +1 -1
  29. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +9 -6
  30. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.d.ts +6 -0
  31. package/esm/LinearGenomeView/components/HeaderSearchBoxRow.js +27 -0
  32. package/esm/LinearGenomeView/components/HeaderSearchBoxes.d.ts +5 -0
  33. package/esm/LinearGenomeView/components/HeaderSearchBoxes.js +28 -0
  34. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +3 -2
  35. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +11 -4
  36. package/esm/LinearGenomeView/components/HeaderZoomControls.d.ts +3 -2
  37. package/esm/LinearGenomeView/components/HeaderZoomControls.js +67 -51
  38. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  39. package/esm/LinearGenomeView/components/Highlight.js +19 -23
  40. package/esm/LinearGenomeView/components/HighlightBand.d.ts +3 -2
  41. package/esm/LinearGenomeView/components/HighlightBand.js +25 -8
  42. package/esm/LinearGenomeView/components/HighlightChip.d.ts +9 -0
  43. package/esm/LinearGenomeView/components/HighlightChip.js +15 -0
  44. package/esm/LinearGenomeView/components/HoverPositionHighlight.d.ts +12 -0
  45. package/esm/LinearGenomeView/components/HoverPositionHighlight.js +25 -0
  46. package/esm/LinearGenomeView/components/ImportForm.d.ts +3 -4
  47. package/esm/LinearGenomeView/components/ImportForm.js +95 -61
  48. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
  49. package/esm/LinearGenomeView/components/LinearGenomeView.js +6 -5
  50. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +1 -1
  51. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +89 -30
  52. package/esm/LinearGenomeView/components/MiniControls.d.ts +1 -1
  53. package/esm/LinearGenomeView/components/MiniControls.js +13 -10
  54. package/esm/LinearGenomeView/components/MotifListPanel.d.ts +3 -0
  55. package/esm/LinearGenomeView/components/MotifListPanel.js +59 -0
  56. package/esm/LinearGenomeView/components/NavigationAnnouncer.d.ts +32 -0
  57. package/esm/LinearGenomeView/components/NavigationAnnouncer.js +51 -0
  58. package/esm/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -1
  59. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +1 -1
  60. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +2 -4
  61. package/esm/LinearGenomeView/components/OverviewHighlight.js +23 -44
  62. package/esm/LinearGenomeView/components/OverviewHighlightBand.d.ts +9 -0
  63. package/esm/LinearGenomeView/components/OverviewHighlightBand.js +26 -0
  64. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +3 -3
  65. package/esm/LinearGenomeView/components/OverviewRubberband.js +44 -57
  66. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +4 -5
  67. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +13 -20
  68. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +3 -2
  69. package/esm/LinearGenomeView/components/OverviewScalebar.js +84 -79
  70. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +19 -5
  71. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +55 -32
  72. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +4 -5
  73. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +16 -18
  74. package/esm/LinearGenomeView/components/PaddingBlocks.d.ts +7 -0
  75. package/esm/LinearGenomeView/components/PaddingBlocks.js +61 -0
  76. package/esm/LinearGenomeView/components/RangeSelectOverlay.d.ts +9 -0
  77. package/esm/LinearGenomeView/components/RangeSelectOverlay.js +20 -0
  78. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +2 -3
  79. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +19 -26
  80. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
  81. package/esm/LinearGenomeView/components/Rubberband.js +13 -16
  82. package/esm/LinearGenomeView/components/SVGHighlightBand.d.ts +10 -0
  83. package/esm/LinearGenomeView/components/SVGHighlightBand.js +9 -0
  84. package/esm/LinearGenomeView/components/Scalebar.d.ts +2 -2
  85. package/esm/LinearGenomeView/components/Scalebar.js +16 -21
  86. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  87. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +54 -35
  88. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  89. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +142 -126
  90. package/esm/LinearGenomeView/components/SearchBox.d.ts +22 -2
  91. package/esm/LinearGenomeView/components/SearchBox.js +58 -66
  92. package/esm/LinearGenomeView/components/SearchPanelForm.d.ts +9 -0
  93. package/esm/LinearGenomeView/components/SearchPanelForm.js +18 -0
  94. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +3 -3
  95. package/esm/LinearGenomeView/components/SearchResultsDialog.js +5 -7
  96. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +4 -3
  97. package/esm/LinearGenomeView/components/SearchResultsTable.js +45 -53
  98. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.d.ts +5 -0
  99. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlight.js +37 -0
  100. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.d.ts +2 -0
  101. package/esm/LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.js +5 -0
  102. package/esm/LinearGenomeView/components/SequencePatternPanel.d.ts +3 -0
  103. package/esm/LinearGenomeView/components/SequencePatternPanel.js +42 -0
  104. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -2
  105. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +31 -53
  106. package/esm/LinearGenomeView/components/StrandCheckboxes.d.ts +8 -0
  107. package/esm/LinearGenomeView/components/StrandCheckboxes.js +13 -0
  108. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  109. package/esm/LinearGenomeView/components/TrackContainer.js +83 -39
  110. package/esm/LinearGenomeView/components/TrackLabel.d.ts +2 -3
  111. package/esm/LinearGenomeView/components/TrackLabel.js +11 -24
  112. package/esm/LinearGenomeView/components/TrackLabelButtons.d.ts +7 -0
  113. package/esm/LinearGenomeView/components/TrackLabelButtons.js +33 -0
  114. package/esm/LinearGenomeView/components/TrackLabelDragHandle.d.ts +2 -5
  115. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +6 -2
  116. package/esm/LinearGenomeView/components/TrackLabelMenu.d.ts +1 -1
  117. package/esm/LinearGenomeView/components/TrackLabelMenu.js +32 -85
  118. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.d.ts +22 -0
  119. package/esm/LinearGenomeView/components/TrackLabelRefNameWarning.js +46 -0
  120. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -1
  121. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +72 -18
  122. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  123. package/esm/LinearGenomeView/components/TracksContainer.js +65 -32
  124. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +1 -1
  125. package/esm/LinearGenomeView/components/VerticalGuide.js +6 -13
  126. package/esm/LinearGenomeView/components/ZoomButton.d.ts +7 -0
  127. package/esm/LinearGenomeView/components/ZoomButton.js +27 -0
  128. package/esm/LinearGenomeView/components/ZoomTransform.d.ts +9 -0
  129. package/esm/LinearGenomeView/components/ZoomTransform.js +37 -0
  130. package/esm/LinearGenomeView/components/defaultMotifs.d.ts +1 -0
  131. package/esm/LinearGenomeView/components/defaultMotifs.js +22 -0
  132. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -8
  133. package/esm/LinearGenomeView/components/fetchSequence.js +17 -9
  134. package/esm/LinearGenomeView/components/recentLocationsMenu.d.ts +15 -0
  135. package/esm/LinearGenomeView/components/recentLocationsMenu.js +36 -0
  136. package/esm/LinearGenomeView/components/searchModes.d.ts +13 -0
  137. package/esm/LinearGenomeView/components/searchModes.js +22 -0
  138. package/esm/LinearGenomeView/components/trackLabelMenuItems.d.ts +7 -0
  139. package/esm/LinearGenomeView/components/trackLabelMenuItems.js +67 -0
  140. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +11 -66
  141. package/esm/LinearGenomeView/components/useRangeSelect.js +82 -91
  142. package/esm/LinearGenomeView/components/useSearchBoxPrefs.d.ts +26 -0
  143. package/esm/LinearGenomeView/components/useSearchBoxPrefs.js +58 -0
  144. package/esm/LinearGenomeView/components/useSideScroll.d.ts +1 -1
  145. package/esm/LinearGenomeView/components/useSideScroll.js +87 -19
  146. package/esm/LinearGenomeView/components/util.d.ts +20 -6
  147. package/esm/LinearGenomeView/components/util.js +27 -6
  148. package/esm/LinearGenomeView/consts.d.ts +7 -2
  149. package/esm/LinearGenomeView/consts.js +18 -2
  150. package/esm/LinearGenomeView/flyTo.d.ts +38 -0
  151. package/esm/LinearGenomeView/flyTo.js +135 -0
  152. package/esm/LinearGenomeView/headerFit.d.ts +27 -0
  153. package/esm/LinearGenomeView/headerFit.js +59 -0
  154. package/esm/LinearGenomeView/index.d.ts +32 -2
  155. package/esm/LinearGenomeView/index.js +16 -6
  156. package/esm/LinearGenomeView/initKeys.d.ts +12 -0
  157. package/esm/LinearGenomeView/initKeys.js +68 -0
  158. package/esm/LinearGenomeView/keyboardHandler.d.ts +7 -0
  159. package/esm/LinearGenomeView/keyboardHandler.js +10 -0
  160. package/esm/LinearGenomeView/launchKeys.d.ts +2 -0
  161. package/esm/LinearGenomeView/launchKeys.js +23 -0
  162. package/esm/LinearGenomeView/lazyDialogs.d.ts +7 -11
  163. package/esm/LinearGenomeView/lazyDialogs.js +3 -3
  164. package/esm/LinearGenomeView/linkedViewSync.d.ts +20 -0
  165. package/esm/LinearGenomeView/linkedViewSync.js +58 -0
  166. package/esm/LinearGenomeView/menuItems.d.ts +27 -2
  167. package/esm/LinearGenomeView/menuItems.js +137 -101
  168. package/esm/LinearGenomeView/model.d.ts +3238 -136
  169. package/esm/LinearGenomeView/model.js +2425 -528
  170. package/esm/LinearGenomeView/sharedScaleContainer.d.ts +18 -0
  171. package/esm/LinearGenomeView/sharedScaleContainer.js +17 -0
  172. package/esm/LinearGenomeView/showRegionsWithUndo.d.ts +35 -0
  173. package/esm/LinearGenomeView/showRegionsWithUndo.js +44 -0
  174. package/esm/LinearGenomeView/stickyChrome.d.ts +19 -0
  175. package/esm/LinearGenomeView/stickyChrome.js +30 -0
  176. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts +1 -1
  177. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +15 -16
  178. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +2 -3
  179. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +45 -33
  180. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.d.ts +5 -0
  181. package/esm/LinearGenomeView/svgcomponents/SVGHighlights.js +26 -0
  182. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.d.ts +5 -0
  183. package/esm/LinearGenomeView/svgcomponents/SVGHighlightsOverlay.js +13 -0
  184. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +1 -3
  185. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +77 -41
  186. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -1
  187. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +23 -3
  188. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.d.ts +8 -0
  189. package/esm/LinearGenomeView/svgcomponents/SVGRowHeader.js +37 -0
  190. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +3 -3
  191. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +64 -36
  192. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -1
  193. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +7 -5
  194. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +5 -3
  195. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +43 -7
  196. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +8 -14
  197. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +16 -21
  198. package/esm/LinearGenomeView/svgcomponents/SVGView.d.ts +18 -0
  199. package/esm/LinearGenomeView/svgcomponents/SVGView.js +13 -0
  200. package/esm/LinearGenomeView/svgcomponents/figureContract.d.ts +45 -0
  201. package/esm/LinearGenomeView/svgcomponents/figureContract.js +130 -0
  202. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.d.ts +76 -0
  203. package/esm/LinearGenomeView/svgcomponents/renderViewTracks.js +66 -0
  204. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.d.ts +70 -0
  205. package/esm/LinearGenomeView/svgcomponents/useViewSvgFigure.js +263 -0
  206. package/esm/LinearGenomeView/svgcomponents/util.d.ts +92 -5
  207. package/esm/LinearGenomeView/svgcomponents/util.js +236 -3
  208. package/esm/LinearGenomeView/types.d.ts +17 -31
  209. package/esm/LinearGenomeView/types.js +1 -0
  210. package/esm/LinearGenomeView/util.d.ts +332 -12
  211. package/esm/LinearGenomeView/util.js +606 -62
  212. package/esm/MultiLevelRubberband/MultiLevelRubberband.d.ts +6 -0
  213. package/esm/MultiLevelRubberband/MultiLevelRubberband.js +37 -0
  214. package/esm/MultiLevelRubberband/VerticalGuide.d.ts +6 -0
  215. package/esm/MultiLevelRubberband/VerticalGuide.js +21 -0
  216. package/esm/MultiLevelRubberband/index.d.ts +2 -0
  217. package/esm/MultiLevelRubberband/index.js +1 -0
  218. package/esm/MultiLevelRubberband/types.d.ts +6 -0
  219. package/esm/MultiLevelRubberband/useRangeSelect.d.ts +24 -0
  220. package/esm/MultiLevelRubberband/useRangeSelect.js +136 -0
  221. package/esm/displayKitTests/perRegionTestEnv.d.ts +1286 -0
  222. package/esm/displayKitTests/perRegionTestEnv.js +138 -0
  223. package/esm/index.d.ts +122 -1235
  224. package/esm/index.js +101 -24
  225. package/esm/lazyPluginExports.d.ts +23 -0
  226. package/esm/lazyPluginExports.js +36 -0
  227. package/esm/searchUtils.d.ts +55 -11
  228. package/esm/searchUtils.js +342 -45
  229. package/esm/shared/RubberbandSpan.d.ts +15 -0
  230. package/esm/shared/RubberbandSpan.js +33 -0
  231. package/esm/shared/coordLabels.d.ts +40 -0
  232. package/esm/shared/coordLabels.js +119 -0
  233. package/package.json +18 -19
  234. package/esm/BaseLinearDisplay/SVGLegend.d.ts +0 -6
  235. package/esm/BaseLinearDisplay/SVGLegend.js +0 -17
  236. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +0 -2
  237. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +0 -11
  238. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  239. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -53
  240. package/esm/BaseLinearDisplay/components/Block.d.ts +0 -14
  241. package/esm/BaseLinearDisplay/components/Block.js +0 -45
  242. package/esm/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  243. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +0 -22
  244. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  245. package/esm/BaseLinearDisplay/components/BlockMsg.js +0 -26
  246. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +0 -9
  247. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +0 -42
  248. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +0 -11
  249. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +0 -40
  250. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +0 -19
  251. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +0 -45
  252. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +0 -5
  253. package/esm/BaseLinearDisplay/components/FloatingLabels.js +0 -75
  254. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +0 -8
  255. package/esm/BaseLinearDisplay/components/FloatingLegend.js +0 -43
  256. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -5
  257. package/esm/BaseLinearDisplay/components/LinearBlocks.js +0 -23
  258. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +0 -5
  259. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +0 -49
  260. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +0 -4
  261. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +0 -26
  262. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +0 -8
  263. package/esm/BaseLinearDisplay/components/MenuPage.js +0 -24
  264. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +0 -21
  265. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +0 -52
  266. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +0 -12
  267. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +0 -22
  268. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -12
  269. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -18
  270. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  271. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +0 -20
  272. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +0 -13
  273. package/esm/BaseLinearDisplay/components/Tooltip.js +0 -22
  274. package/esm/BaseLinearDisplay/components/types.d.ts +0 -1
  275. package/esm/BaseLinearDisplay/components/util.d.ts +0 -21
  276. package/esm/BaseLinearDisplay/components/util.js +0 -107
  277. package/esm/BaseLinearDisplay/index.d.ts +0 -17
  278. package/esm/BaseLinearDisplay/index.js +0 -13
  279. package/esm/BaseLinearDisplay/model.d.ts +0 -1197
  280. package/esm/BaseLinearDisplay/model.js +0 -432
  281. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  282. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -113
  283. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +0 -26
  284. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +0 -57
  285. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.d.ts +0 -8
  286. package/esm/BaseLinearDisplay/models/SvgFloatingLabels.js +0 -19
  287. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  288. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +0 -31
  289. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  290. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -29
  291. package/esm/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  292. package/esm/BaseLinearDisplay/models/configSchema.js +0 -33
  293. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -98
  294. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -242
  295. package/esm/BaseLinearDisplay/models/util.d.ts +0 -9
  296. package/esm/BaseLinearDisplay/models/util.js +0 -43
  297. package/esm/BaseLinearDisplay/renderSvg.d.ts +0 -3
  298. package/esm/BaseLinearDisplay/renderSvg.js +0 -63
  299. package/esm/BaseLinearDisplay/types.d.ts +0 -43
  300. package/esm/BaseLinearDisplay/types.js +0 -3
  301. package/esm/BaseLinearDisplay/util.d.ts +0 -16
  302. package/esm/BaseLinearDisplay/util.js +0 -71
  303. package/esm/BasicTrack/configSchema.d.ts +0 -85
  304. package/esm/BasicTrack/configSchema.js +0 -8
  305. package/esm/BasicTrack/index.d.ts +0 -2
  306. package/esm/BasicTrack/index.js +0 -12
  307. package/esm/LinearBareDisplay/configSchema.d.ts +0 -32
  308. package/esm/LinearBareDisplay/configSchema.js +0 -11
  309. package/esm/LinearBareDisplay/index.d.ts +0 -4
  310. package/esm/LinearBareDisplay/index.js +0 -20
  311. package/esm/LinearBareDisplay/model.d.ts +0 -1196
  312. package/esm/LinearBareDisplay/model.js +0 -32
  313. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +0 -5
  314. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +0 -9
  315. package/esm/LinearBasicDisplay/configSchema.d.ts +0 -32
  316. package/esm/LinearBasicDisplay/configSchema.js +0 -11
  317. package/esm/LinearBasicDisplay/index.d.ts +0 -4
  318. package/esm/LinearBasicDisplay/index.js +0 -20
  319. package/esm/LinearBasicDisplay/model.d.ts +0 -1391
  320. package/esm/LinearBasicDisplay/model.js +0 -158
  321. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.d.ts +0 -9
  322. package/esm/LinearFeatureDisplay/components/AddFiltersDialog.js +0 -58
  323. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  324. package/esm/LinearFeatureDisplay/components/SetMaxHeightDialog.js +0 -26
  325. package/esm/LinearFeatureDisplay/configSchema.d.ts +0 -32
  326. package/esm/LinearFeatureDisplay/configSchema.js +0 -11
  327. package/esm/LinearFeatureDisplay/index.d.ts +0 -3
  328. package/esm/LinearFeatureDisplay/index.js +0 -2
  329. package/esm/LinearFeatureDisplay/model.d.ts +0 -1443
  330. package/esm/LinearFeatureDisplay/model.js +0 -305
  331. package/esm/LinearGenomeView/SVGErrorBox.d.ts +0 -5
  332. package/esm/LinearGenomeView/SVGErrorBox.js +0 -4
  333. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  334. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -27
  335. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -5
  336. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -13
  337. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  338. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -17
  339. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  340. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -8
  341. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  342. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -101
  343. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  344. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -45
  345. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  346. package/esm/LinearGenomeView/components/RubberbandSpan.js +0 -32
  347. package/esm/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  348. package/esm/LinearGenomeView/components/RubberbandTooltip.js +0 -17
  349. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  350. package/esm/LinearGenomeView/components/TrackLabelContainer.js +0 -25
  351. package/esm/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  352. package/esm/LinearGenomeView/components/useWheelScroll.js +0 -69
  353. package/esm/LinearGenomeView/svgExportUtil.d.ts +0 -9
  354. package/esm/LinearGenomeView/svgExportUtil.js +0 -6
  355. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  356. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +0 -7
  357. /package/esm/{BaseLinearDisplay/components → MultiLevelRubberband}/types.js +0 -0
@@ -1,1197 +0,0 @@
1
- import type React from 'react';
2
- import CompositeMap from '@jbrowse/core/util/compositeMap';
3
- import type { LegendItem } from './components/FloatingLegend.tsx';
4
- import type { ExportSvgDisplayOptions, LayoutRecord } from './types.ts';
5
- import type { MenuItem } from '@jbrowse/core/ui';
6
- import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
7
- import type { BaseBlock } from '@jbrowse/core/util/blockTypes';
8
- import type { Instance } from '@jbrowse/mobx-state-tree';
9
- import type { Theme } from '@mui/material';
10
- export declare const BaseLinearDisplay: import("@jbrowse/mobx-state-tree").IModelType<{
11
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
13
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
14
- } & {
15
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
16
- } & {
17
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
18
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
19
- } & {
20
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
21
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
22
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
23
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
24
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
26
- }, {
27
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
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- filled: boolean;
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- reactElement: React.ReactElement | undefined;
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- features: Map<string, Feature> | undefined;
31
- layout: any;
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- blockStatusMessage: string;
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- error: unknown;
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- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
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- model: {
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- error?: unknown;
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- reload: () => void;
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- message?: React.ReactNode;
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- statusMessage?: string;
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- reactElement?: React.ReactElement;
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- isRenderingPending?: boolean;
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- displayHeight?: number;
45
- };
46
- }) => import("react/jsx-runtime").JSX.Element;
47
- renderProps: any;
48
- renderArgs: Record<string, unknown> | undefined;
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- isRenderingPending: boolean;
50
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
51
- } & {
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- doReload(): void;
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- setStatusMessage(message: string): void;
54
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
55
- setMessage(messageText: string): void;
56
- setRendered(props: import("./models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
57
- setError(error: unknown): void;
58
- reload(): void;
59
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
60
- beforeDestroy(): void;
61
- } & {
62
- readonly statusMessage: any;
63
- readonly displayHeight: number | undefined;
64
- } & {
65
- afterAttach(): void;
66
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
67
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
68
- maxFeatureScreenDensity: {
69
- type: string;
70
- description: string;
71
- defaultValue: number;
72
- };
73
- fetchSizeLimit: {
74
- type: string;
75
- defaultValue: number;
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- description: string;
77
- };
78
- height: {
79
- type: string;
80
- defaultValue: number;
81
- description: string;
82
- };
83
- mouseover: {
84
- type: string;
85
- description: string;
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- defaultValue: string;
87
- contextVariable: string[];
88
- };
89
- jexlFilters: {
90
- type: string;
91
- description: string;
92
- defaultValue: never[];
93
- };
94
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
95
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
96
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
97
- }, {
98
- rendererTypeName: string;
99
- error: unknown;
100
- statusMessage: string | undefined;
101
- } & {
102
- readonly RenderingComponent: React.FC<{
103
- model: {
104
- id: string;
105
- type: string;
106
- rpcDriverName: string | undefined;
107
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
108
- rendererTypeName: string;
109
- error: unknown;
110
- statusMessage: string | undefined;
111
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
112
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
113
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
115
- }, {
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- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
119
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
120
- onHorizontalScroll?: () => void;
121
- blockState?: Record<string, any>;
122
- }>;
123
- readonly DisplayBlurb: React.FC<{
124
- model: {
125
- id: string;
126
- type: string;
127
- rpcDriverName: string | undefined;
128
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
129
- rendererTypeName: string;
130
- error: unknown;
131
- statusMessage: string | undefined;
132
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
133
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
134
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
136
- }, {
137
- rendererTypeName: string;
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- error: unknown;
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- statusMessage: string | undefined;
140
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
141
- }> | null;
142
- readonly adapterConfig: any;
143
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
144
- readonly isMinimized: boolean;
145
- readonly parentDisplay: any;
146
- readonly effectiveRpcDriverName: any;
147
- } & {
148
- renderProps(): any;
149
- renderingProps(): {
150
- displayModel: {
151
- id: string;
152
- type: string;
153
- rpcDriverName: string | undefined;
154
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
155
- rendererTypeName: string;
156
- error: unknown;
157
- statusMessage: string | undefined;
158
- } & {
159
- readonly RenderingComponent: React.FC<{
160
- model: {
161
- id: string;
162
- type: string;
163
- rpcDriverName: string | undefined;
164
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
165
- rendererTypeName: string;
166
- error: unknown;
167
- statusMessage: string | undefined;
168
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
169
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
170
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
171
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
172
- }, {
173
- rendererTypeName: string;
174
- error: unknown;
175
- statusMessage: string | undefined;
176
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
177
- onHorizontalScroll?: () => void;
178
- blockState?: Record<string, any>;
179
- }>;
180
- readonly DisplayBlurb: React.FC<{
181
- model: {
182
- id: string;
183
- type: string;
184
- rpcDriverName: string | undefined;
185
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
186
- rendererTypeName: string;
187
- error: unknown;
188
- statusMessage: string | undefined;
189
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
190
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
191
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
192
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
193
- }, {
194
- rendererTypeName: string;
195
- error: unknown;
196
- statusMessage: string | undefined;
197
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
198
- }> | null;
199
- readonly adapterConfig: any;
200
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
201
- readonly isMinimized: boolean;
202
- readonly parentDisplay: any;
203
- readonly effectiveRpcDriverName: any;
204
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
205
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
206
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
207
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
208
- }, {
209
- rendererTypeName: string;
210
- error: unknown;
211
- statusMessage: string | undefined;
212
- } & {
213
- readonly RenderingComponent: React.FC<{
214
- model: {
215
- id: string;
216
- type: string;
217
- rpcDriverName: string | undefined;
218
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
219
- rendererTypeName: string;
220
- error: unknown;
221
- statusMessage: string | undefined;
222
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
223
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
224
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
225
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
226
- }, {
227
- rendererTypeName: string;
228
- error: unknown;
229
- statusMessage: string | undefined;
230
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
231
- onHorizontalScroll?: () => void;
232
- blockState?: Record<string, any>;
233
- }>;
234
- readonly DisplayBlurb: React.FC<{
235
- model: {
236
- id: string;
237
- type: string;
238
- rpcDriverName: string | undefined;
239
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
240
- rendererTypeName: string;
241
- error: unknown;
242
- statusMessage: string | undefined;
243
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
244
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
245
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
246
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
247
- }, {
248
- rendererTypeName: string;
249
- error: unknown;
250
- statusMessage: string | undefined;
251
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
252
- }> | null;
253
- readonly adapterConfig: any;
254
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
255
- readonly isMinimized: boolean;
256
- readonly parentDisplay: any;
257
- readonly effectiveRpcDriverName: any;
258
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
259
- };
260
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
261
- readonly DisplayMessageComponent: undefined | React.FC<any>;
262
- trackMenuItems(): MenuItem[];
263
- readonly viewMenuActions: MenuItem[];
264
- regionCannotBeRendered(): null;
265
- } & {
266
- setStatusMessage(arg?: string): void;
267
- setError(error?: unknown): void;
268
- setRpcDriverName(rpcDriverName: string): void;
269
- reload(): void;
270
- } & {
271
- scrollTop: number;
272
- } & {
273
- readonly height: number;
274
- } & {
275
- setScrollTop(scrollTop: number): void;
276
- setHeight(displayHeight: number): number;
277
- resizeHeight(distance: number): number;
278
- } & {
279
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
280
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
281
- currStatsBpPerPx: number;
282
- } & {
283
- readonly currentBytesRequested: number;
284
- readonly currentFeatureScreenDensity: number;
285
- readonly maxFeatureScreenDensity: any;
286
- readonly featureDensityStatsReady: boolean;
287
- readonly maxAllowableBytes: number;
288
- } & {
289
- afterAttach(): void;
290
- } & {
291
- setCurrStatsBpPerPx(n: number): void;
292
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
293
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
294
- setFeatureDensityStatsP(arg: any): void;
295
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
296
- clearFeatureDensityStats(): void;
297
- } & {
298
- readonly regionTooLarge: boolean;
299
- readonly regionTooLargeReason: string;
300
- } & {
301
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
302
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
303
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
304
- } & {
305
- mouseoverExtraInformation: string | undefined;
306
- featureIdUnderMouse: undefined | string;
307
- subfeatureIdUnderMouse: undefined | string;
308
- contextMenuFeature: undefined | Feature;
309
- } & {
310
- readonly DisplayMessageComponent: undefined | React.FC<any>;
311
- readonly blockType: "staticBlocks" | "dynamicBlocks";
312
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
313
- } & {
314
- readonly renderDelay: number;
315
- readonly TooltipComponent: AnyReactComponentType;
316
- legendItems(_theme?: Theme): LegendItem[];
317
- svgLegendWidth(theme?: Theme): number;
318
- readonly selectedFeatureId: string | undefined;
319
- readonly featureWidgetType: {
320
- type: string;
321
- id: string;
322
- };
323
- } & {
324
- readonly showTooltipsEnabled: boolean;
325
- readonly features: CompositeMap<string, Feature>;
326
- readonly featureUnderMouse: Feature | undefined;
327
- getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
328
- readonly layoutFeatures: CompositeMap<string, LayoutRecord>;
329
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
330
- getFeatureByID(blockKey: string, id: string): LayoutRecord | undefined;
331
- searchFeatureByID(id: string): LayoutRecord | undefined;
332
- readonly floatingLabelData: Map<string, import("./components/util.ts").FeatureLabelData>;
333
- } & {
334
- addBlock(key: string, block: BaseBlock): void;
335
- deleteBlock(key: string): void;
336
- selectFeature(feature: Feature): void;
337
- navToFeature(feature: Feature): void;
338
- clearFeatureSelection(): void;
339
- setFeatureIdUnderMouse(feature?: string): void;
340
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
341
- setContextMenuFeature(feature?: Feature): void;
342
- setMouseoverExtraInformation(extra?: string): void;
343
- setShowLegend(s: boolean): void;
344
- setShowTooltips(arg: boolean): void;
345
- } & {
346
- reload(): Promise<void>;
347
- } & {
348
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
349
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
350
- } & {
351
- trackMenuItems(): MenuItem[];
352
- contextMenuItems(): MenuItem[];
353
- renderingProps(): {
354
- displayModel: {
355
- id: string;
356
- type: string;
357
- rpcDriverName: string | undefined;
358
- heightPreConfig: number | undefined;
359
- userBpPerPxLimit: number | undefined;
360
- userByteSizeLimit: number | undefined;
361
- blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
362
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
363
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
364
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
365
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
366
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
367
- }, {
368
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
369
- filled: boolean;
370
- reactElement: React.ReactElement | undefined;
371
- features: Map<string, Feature> | undefined;
372
- layout: any;
373
- blockStatusMessage: string;
374
- error: unknown;
375
- message: string | undefined;
376
- maxHeightReached: boolean;
377
- ReactComponent: ({ model, }: {
378
- model: {
379
- error?: unknown;
380
- reload: () => void;
381
- message?: React.ReactNode;
382
- statusMessage?: string;
383
- reactElement?: React.ReactElement;
384
- isRenderingPending?: boolean;
385
- displayHeight?: number;
386
- };
387
- }) => import("react/jsx-runtime").JSX.Element;
388
- renderProps: any;
389
- renderArgs: Record<string, unknown> | undefined;
390
- isRenderingPending: boolean;
391
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
392
- } & {
393
- doReload(): void;
394
- setStatusMessage(message: string): void;
395
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
396
- setMessage(messageText: string): void;
397
- setRendered(props: import("./models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
398
- setError(error: unknown): void;
399
- reload(): void;
400
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
401
- beforeDestroy(): void;
402
- } & {
403
- readonly statusMessage: any;
404
- readonly displayHeight: number | undefined;
405
- } & {
406
- afterAttach(): void;
407
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
408
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
409
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
410
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
411
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
412
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
413
- }, {
414
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
415
- filled: boolean;
416
- reactElement: React.ReactElement | undefined;
417
- features: Map<string, Feature> | undefined;
418
- layout: any;
419
- blockStatusMessage: string;
420
- error: unknown;
421
- message: string | undefined;
422
- maxHeightReached: boolean;
423
- ReactComponent: ({ model, }: {
424
- model: {
425
- error?: unknown;
426
- reload: () => void;
427
- message?: React.ReactNode;
428
- statusMessage?: string;
429
- reactElement?: React.ReactElement;
430
- isRenderingPending?: boolean;
431
- displayHeight?: number;
432
- };
433
- }) => import("react/jsx-runtime").JSX.Element;
434
- renderProps: any;
435
- renderArgs: Record<string, unknown> | undefined;
436
- isRenderingPending: boolean;
437
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
438
- } & {
439
- doReload(): void;
440
- setStatusMessage(message: string): void;
441
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
442
- setMessage(messageText: string): void;
443
- setRendered(props: import("./models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
444
- setError(error: unknown): void;
445
- reload(): void;
446
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
447
- beforeDestroy(): void;
448
- } & {
449
- readonly statusMessage: any;
450
- readonly displayHeight: number | undefined;
451
- } & {
452
- afterAttach(): void;
453
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
454
- configuration: {
455
- [x: string]: any;
456
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
457
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
458
- [x: string]: any;
459
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
460
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
461
- [x: string]: any;
462
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
463
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
464
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
465
- maxFeatureScreenDensity: {
466
- type: string;
467
- description: string;
468
- defaultValue: number;
469
- };
470
- fetchSizeLimit: {
471
- type: string;
472
- defaultValue: number;
473
- description: string;
474
- };
475
- height: {
476
- type: string;
477
- defaultValue: number;
478
- description: string;
479
- };
480
- mouseover: {
481
- type: string;
482
- description: string;
483
- defaultValue: string;
484
- contextVariable: string[];
485
- };
486
- jexlFilters: {
487
- type: string;
488
- description: string;
489
- defaultValue: never[];
490
- };
491
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
492
- showLegend: boolean | undefined;
493
- showTooltips: boolean | undefined;
494
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
495
- rendererTypeName: string;
496
- error: unknown;
497
- statusMessage: string | undefined;
498
- } & {
499
- readonly RenderingComponent: React.FC<{
500
- model: {
501
- id: string;
502
- type: string;
503
- rpcDriverName: string | undefined;
504
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
505
- rendererTypeName: string;
506
- error: unknown;
507
- statusMessage: string | undefined;
508
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
509
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
510
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
511
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
512
- }, {
513
- rendererTypeName: string;
514
- error: unknown;
515
- statusMessage: string | undefined;
516
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
517
- onHorizontalScroll?: () => void;
518
- blockState?: Record<string, any>;
519
- }>;
520
- readonly DisplayBlurb: React.FC<{
521
- model: {
522
- id: string;
523
- type: string;
524
- rpcDriverName: string | undefined;
525
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
526
- rendererTypeName: string;
527
- error: unknown;
528
- statusMessage: string | undefined;
529
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
530
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
531
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
532
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
533
- }, {
534
- rendererTypeName: string;
535
- error: unknown;
536
- statusMessage: string | undefined;
537
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
538
- }> | null;
539
- readonly adapterConfig: any;
540
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
541
- readonly isMinimized: boolean;
542
- readonly parentDisplay: any;
543
- readonly effectiveRpcDriverName: any;
544
- } & {
545
- renderProps(): any;
546
- renderingProps(): {
547
- displayModel: {
548
- id: string;
549
- type: string;
550
- rpcDriverName: string | undefined;
551
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
552
- rendererTypeName: string;
553
- error: unknown;
554
- statusMessage: string | undefined;
555
- } & {
556
- readonly RenderingComponent: React.FC<{
557
- model: {
558
- id: string;
559
- type: string;
560
- rpcDriverName: string | undefined;
561
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
562
- rendererTypeName: string;
563
- error: unknown;
564
- statusMessage: string | undefined;
565
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
566
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
567
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
568
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
569
- }, {
570
- rendererTypeName: string;
571
- error: unknown;
572
- statusMessage: string | undefined;
573
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
574
- onHorizontalScroll?: () => void;
575
- blockState?: Record<string, any>;
576
- }>;
577
- readonly DisplayBlurb: React.FC<{
578
- model: {
579
- id: string;
580
- type: string;
581
- rpcDriverName: string | undefined;
582
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
583
- rendererTypeName: string;
584
- error: unknown;
585
- statusMessage: string | undefined;
586
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
587
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
588
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
589
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
590
- }, {
591
- rendererTypeName: string;
592
- error: unknown;
593
- statusMessage: string | undefined;
594
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
595
- }> | null;
596
- readonly adapterConfig: any;
597
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
598
- readonly isMinimized: boolean;
599
- readonly parentDisplay: any;
600
- readonly effectiveRpcDriverName: any;
601
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
602
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
603
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
604
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
605
- }, {
606
- rendererTypeName: string;
607
- error: unknown;
608
- statusMessage: string | undefined;
609
- } & {
610
- readonly RenderingComponent: React.FC<{
611
- model: {
612
- id: string;
613
- type: string;
614
- rpcDriverName: string | undefined;
615
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
616
- rendererTypeName: string;
617
- error: unknown;
618
- statusMessage: string | undefined;
619
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
620
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
621
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
622
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
623
- }, {
624
- rendererTypeName: string;
625
- error: unknown;
626
- statusMessage: string | undefined;
627
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
628
- onHorizontalScroll?: () => void;
629
- blockState?: Record<string, any>;
630
- }>;
631
- readonly DisplayBlurb: React.FC<{
632
- model: {
633
- id: string;
634
- type: string;
635
- rpcDriverName: string | undefined;
636
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
637
- rendererTypeName: string;
638
- error: unknown;
639
- statusMessage: string | undefined;
640
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
641
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
642
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
643
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
644
- }, {
645
- rendererTypeName: string;
646
- error: unknown;
647
- statusMessage: string | undefined;
648
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
649
- }> | null;
650
- readonly adapterConfig: any;
651
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
652
- readonly isMinimized: boolean;
653
- readonly parentDisplay: any;
654
- readonly effectiveRpcDriverName: any;
655
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
656
- };
657
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
658
- readonly DisplayMessageComponent: undefined | React.FC<any>;
659
- trackMenuItems(): MenuItem[];
660
- readonly viewMenuActions: MenuItem[];
661
- regionCannotBeRendered(): null;
662
- } & {
663
- setStatusMessage(arg?: string): void;
664
- setError(error?: unknown): void;
665
- setRpcDriverName(rpcDriverName: string): void;
666
- reload(): void;
667
- } & {
668
- scrollTop: number;
669
- } & {
670
- readonly height: number;
671
- } & {
672
- setScrollTop(scrollTop: number): void;
673
- setHeight(displayHeight: number): number;
674
- resizeHeight(distance: number): number;
675
- } & {
676
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
677
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
678
- currStatsBpPerPx: number;
679
- } & {
680
- readonly currentBytesRequested: number;
681
- readonly currentFeatureScreenDensity: number;
682
- readonly maxFeatureScreenDensity: any;
683
- readonly featureDensityStatsReady: boolean;
684
- readonly maxAllowableBytes: number;
685
- } & {
686
- afterAttach(): void;
687
- } & {
688
- setCurrStatsBpPerPx(n: number): void;
689
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
690
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
691
- setFeatureDensityStatsP(arg: any): void;
692
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
693
- clearFeatureDensityStats(): void;
694
- } & {
695
- readonly regionTooLarge: boolean;
696
- readonly regionTooLargeReason: string;
697
- } & {
698
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
699
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
700
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
701
- } & {
702
- mouseoverExtraInformation: string | undefined;
703
- featureIdUnderMouse: undefined | string;
704
- subfeatureIdUnderMouse: undefined | string;
705
- contextMenuFeature: undefined | Feature;
706
- } & {
707
- readonly DisplayMessageComponent: undefined | React.FC<any>;
708
- readonly blockType: "staticBlocks" | "dynamicBlocks";
709
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
710
- } & {
711
- readonly renderDelay: number;
712
- readonly TooltipComponent: AnyReactComponentType;
713
- legendItems(_theme?: Theme): LegendItem[];
714
- svgLegendWidth(theme?: Theme): number;
715
- readonly selectedFeatureId: string | undefined;
716
- readonly featureWidgetType: {
717
- type: string;
718
- id: string;
719
- };
720
- } & {
721
- readonly showTooltipsEnabled: boolean;
722
- readonly features: CompositeMap<string, Feature>;
723
- readonly featureUnderMouse: Feature | undefined;
724
- getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
725
- readonly layoutFeatures: CompositeMap<string, LayoutRecord>;
726
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
727
- getFeatureByID(blockKey: string, id: string): LayoutRecord | undefined;
728
- searchFeatureByID(id: string): LayoutRecord | undefined;
729
- readonly floatingLabelData: Map<string, import("./components/util.ts").FeatureLabelData>;
730
- } & {
731
- addBlock(key: string, block: BaseBlock): void;
732
- deleteBlock(key: string): void;
733
- selectFeature(feature: Feature): void;
734
- navToFeature(feature: Feature): void;
735
- clearFeatureSelection(): void;
736
- setFeatureIdUnderMouse(feature?: string): void;
737
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
738
- setContextMenuFeature(feature?: Feature): void;
739
- setMouseoverExtraInformation(extra?: string): void;
740
- setShowLegend(s: boolean): void;
741
- setShowTooltips(arg: boolean): void;
742
- } & {
743
- reload(): Promise<void>;
744
- } & {
745
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
746
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
747
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
748
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
749
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
750
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
751
- } & {
752
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
753
- } & {
754
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
755
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
756
- } & {
757
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
758
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
759
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
760
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
761
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
762
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
763
- }, {
764
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
765
- filled: boolean;
766
- reactElement: React.ReactElement | undefined;
767
- features: Map<string, Feature> | undefined;
768
- layout: any;
769
- blockStatusMessage: string;
770
- error: unknown;
771
- message: string | undefined;
772
- maxHeightReached: boolean;
773
- ReactComponent: ({ model, }: {
774
- model: {
775
- error?: unknown;
776
- reload: () => void;
777
- message?: React.ReactNode;
778
- statusMessage?: string;
779
- reactElement?: React.ReactElement;
780
- isRenderingPending?: boolean;
781
- displayHeight?: number;
782
- };
783
- }) => import("react/jsx-runtime").JSX.Element;
784
- renderProps: any;
785
- renderArgs: Record<string, unknown> | undefined;
786
- isRenderingPending: boolean;
787
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
788
- } & {
789
- doReload(): void;
790
- setStatusMessage(message: string): void;
791
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
792
- setMessage(messageText: string): void;
793
- setRendered(props: import("./models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
794
- setError(error: unknown): void;
795
- reload(): void;
796
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
797
- beforeDestroy(): void;
798
- } & {
799
- readonly statusMessage: any;
800
- readonly displayHeight: number | undefined;
801
- } & {
802
- afterAttach(): void;
803
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
804
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
805
- maxFeatureScreenDensity: {
806
- type: string;
807
- description: string;
808
- defaultValue: number;
809
- };
810
- fetchSizeLimit: {
811
- type: string;
812
- defaultValue: number;
813
- description: string;
814
- };
815
- height: {
816
- type: string;
817
- defaultValue: number;
818
- description: string;
819
- };
820
- mouseover: {
821
- type: string;
822
- description: string;
823
- defaultValue: string;
824
- contextVariable: string[];
825
- };
826
- jexlFilters: {
827
- type: string;
828
- description: string;
829
- defaultValue: never[];
830
- };
831
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
832
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
833
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
834
- }, {
835
- rendererTypeName: string;
836
- error: unknown;
837
- statusMessage: string | undefined;
838
- } & {
839
- readonly RenderingComponent: React.FC<{
840
- model: {
841
- id: string;
842
- type: string;
843
- rpcDriverName: string | undefined;
844
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
845
- rendererTypeName: string;
846
- error: unknown;
847
- statusMessage: string | undefined;
848
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
849
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
850
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
851
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
852
- }, {
853
- rendererTypeName: string;
854
- error: unknown;
855
- statusMessage: string | undefined;
856
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
857
- onHorizontalScroll?: () => void;
858
- blockState?: Record<string, any>;
859
- }>;
860
- readonly DisplayBlurb: React.FC<{
861
- model: {
862
- id: string;
863
- type: string;
864
- rpcDriverName: string | undefined;
865
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
866
- rendererTypeName: string;
867
- error: unknown;
868
- statusMessage: string | undefined;
869
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
870
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
871
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
872
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
873
- }, {
874
- rendererTypeName: string;
875
- error: unknown;
876
- statusMessage: string | undefined;
877
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
878
- }> | null;
879
- readonly adapterConfig: any;
880
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
881
- readonly isMinimized: boolean;
882
- readonly parentDisplay: any;
883
- readonly effectiveRpcDriverName: any;
884
- } & {
885
- renderProps(): any;
886
- renderingProps(): {
887
- displayModel: {
888
- id: string;
889
- type: string;
890
- rpcDriverName: string | undefined;
891
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
892
- rendererTypeName: string;
893
- error: unknown;
894
- statusMessage: string | undefined;
895
- } & {
896
- readonly RenderingComponent: React.FC<{
897
- model: {
898
- id: string;
899
- type: string;
900
- rpcDriverName: string | undefined;
901
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
902
- rendererTypeName: string;
903
- error: unknown;
904
- statusMessage: string | undefined;
905
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
906
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
907
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
908
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
909
- }, {
910
- rendererTypeName: string;
911
- error: unknown;
912
- statusMessage: string | undefined;
913
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
914
- onHorizontalScroll?: () => void;
915
- blockState?: Record<string, any>;
916
- }>;
917
- readonly DisplayBlurb: React.FC<{
918
- model: {
919
- id: string;
920
- type: string;
921
- rpcDriverName: string | undefined;
922
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
923
- rendererTypeName: string;
924
- error: unknown;
925
- statusMessage: string | undefined;
926
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
927
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
928
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
929
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
930
- }, {
931
- rendererTypeName: string;
932
- error: unknown;
933
- statusMessage: string | undefined;
934
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
935
- }> | null;
936
- readonly adapterConfig: any;
937
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
938
- readonly isMinimized: boolean;
939
- readonly parentDisplay: any;
940
- readonly effectiveRpcDriverName: any;
941
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
942
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
943
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
944
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
945
- }, {
946
- rendererTypeName: string;
947
- error: unknown;
948
- statusMessage: string | undefined;
949
- } & {
950
- readonly RenderingComponent: React.FC<{
951
- model: {
952
- id: string;
953
- type: string;
954
- rpcDriverName: string | undefined;
955
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
956
- rendererTypeName: string;
957
- error: unknown;
958
- statusMessage: string | undefined;
959
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
960
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
961
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
962
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
963
- }, {
964
- rendererTypeName: string;
965
- error: unknown;
966
- statusMessage: string | undefined;
967
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
968
- onHorizontalScroll?: () => void;
969
- blockState?: Record<string, any>;
970
- }>;
971
- readonly DisplayBlurb: React.FC<{
972
- model: {
973
- id: string;
974
- type: string;
975
- rpcDriverName: string | undefined;
976
- } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
977
- rendererTypeName: string;
978
- error: unknown;
979
- statusMessage: string | undefined;
980
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
981
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
982
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
983
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
984
- }, {
985
- rendererTypeName: string;
986
- error: unknown;
987
- statusMessage: string | undefined;
988
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
989
- }> | null;
990
- readonly adapterConfig: any;
991
- readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
992
- readonly isMinimized: boolean;
993
- readonly parentDisplay: any;
994
- readonly effectiveRpcDriverName: any;
995
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
996
- };
997
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
998
- readonly DisplayMessageComponent: undefined | React.FC<any>;
999
- trackMenuItems(): MenuItem[];
1000
- readonly viewMenuActions: MenuItem[];
1001
- regionCannotBeRendered(): null;
1002
- } & {
1003
- setStatusMessage(arg?: string): void;
1004
- setError(error?: unknown): void;
1005
- setRpcDriverName(rpcDriverName: string): void;
1006
- reload(): void;
1007
- } & {
1008
- scrollTop: number;
1009
- } & {
1010
- readonly height: number;
1011
- } & {
1012
- setScrollTop(scrollTop: number): void;
1013
- setHeight(displayHeight: number): number;
1014
- resizeHeight(distance: number): number;
1015
- } & {
1016
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1017
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1018
- currStatsBpPerPx: number;
1019
- } & {
1020
- readonly currentBytesRequested: number;
1021
- readonly currentFeatureScreenDensity: number;
1022
- readonly maxFeatureScreenDensity: any;
1023
- readonly featureDensityStatsReady: boolean;
1024
- readonly maxAllowableBytes: number;
1025
- } & {
1026
- afterAttach(): void;
1027
- } & {
1028
- setCurrStatsBpPerPx(n: number): void;
1029
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1030
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1031
- setFeatureDensityStatsP(arg: any): void;
1032
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1033
- clearFeatureDensityStats(): void;
1034
- } & {
1035
- readonly regionTooLarge: boolean;
1036
- readonly regionTooLargeReason: string;
1037
- } & {
1038
- readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1039
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1040
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1041
- } & {
1042
- mouseoverExtraInformation: string | undefined;
1043
- featureIdUnderMouse: undefined | string;
1044
- subfeatureIdUnderMouse: undefined | string;
1045
- contextMenuFeature: undefined | Feature;
1046
- } & {
1047
- readonly DisplayMessageComponent: undefined | React.FC<any>;
1048
- readonly blockType: "staticBlocks" | "dynamicBlocks";
1049
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1050
- } & {
1051
- readonly renderDelay: number;
1052
- readonly TooltipComponent: AnyReactComponentType;
1053
- legendItems(_theme?: Theme): LegendItem[];
1054
- svgLegendWidth(theme?: Theme): number;
1055
- readonly selectedFeatureId: string | undefined;
1056
- readonly featureWidgetType: {
1057
- type: string;
1058
- id: string;
1059
- };
1060
- } & {
1061
- readonly showTooltipsEnabled: boolean;
1062
- readonly features: CompositeMap<string, Feature>;
1063
- readonly featureUnderMouse: Feature | undefined;
1064
- getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
1065
- readonly layoutFeatures: CompositeMap<string, LayoutRecord>;
1066
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1067
- getFeatureByID(blockKey: string, id: string): LayoutRecord | undefined;
1068
- searchFeatureByID(id: string): LayoutRecord | undefined;
1069
- readonly floatingLabelData: Map<string, import("./components/util.ts").FeatureLabelData>;
1070
- } & {
1071
- addBlock(key: string, block: BaseBlock): void;
1072
- deleteBlock(key: string): void;
1073
- selectFeature(feature: Feature): void;
1074
- navToFeature(feature: Feature): void;
1075
- clearFeatureSelection(): void;
1076
- setFeatureIdUnderMouse(feature?: string): void;
1077
- setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1078
- setContextMenuFeature(feature?: Feature): void;
1079
- setMouseoverExtraInformation(extra?: string): void;
1080
- setShowLegend(s: boolean): void;
1081
- setShowTooltips(arg: boolean): void;
1082
- } & {
1083
- reload(): Promise<void>;
1084
- } & {
1085
- selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1086
- setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1087
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1088
- onMouseMove(_: unknown, featureId?: string): void;
1089
- onMouseLeave(_: unknown): void;
1090
- onContextMenu(_: unknown): void;
1091
- onFeatureClick(_: unknown, featureId?: string): void;
1092
- };
1093
- renderProps(): any;
1094
- } & {
1095
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
1096
- afterAttach(): void;
1097
- }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
1098
- id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1099
- type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1100
- rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1101
- } & {
1102
- heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1103
- } & {
1104
- userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1105
- userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1106
- } & {
1107
- blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1108
- key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1109
- region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1110
- reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1111
- isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1112
- isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1113
- }, {
1114
- stopToken: import("@jbrowse/core/util").StopToken | undefined;
1115
- filled: boolean;
1116
- reactElement: React.ReactElement | undefined;
1117
- features: Map<string, Feature> | undefined;
1118
- layout: any;
1119
- blockStatusMessage: string;
1120
- error: unknown;
1121
- message: string | undefined;
1122
- maxHeightReached: boolean;
1123
- ReactComponent: ({ model, }: {
1124
- model: {
1125
- error?: unknown;
1126
- reload: () => void;
1127
- message?: React.ReactNode;
1128
- statusMessage?: string;
1129
- reactElement?: React.ReactElement;
1130
- isRenderingPending?: boolean;
1131
- displayHeight?: number;
1132
- };
1133
- }) => import("react/jsx-runtime").JSX.Element;
1134
- renderProps: any;
1135
- renderArgs: Record<string, unknown> | undefined;
1136
- isRenderingPending: boolean;
1137
- cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1138
- } & {
1139
- doReload(): void;
1140
- setStatusMessage(message: string): void;
1141
- setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1142
- setMessage(messageText: string): void;
1143
- setRendered(props: import("./models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1144
- setError(error: unknown): void;
1145
- reload(): void;
1146
- setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1147
- beforeDestroy(): void;
1148
- } & {
1149
- readonly statusMessage: any;
1150
- readonly displayHeight: number | undefined;
1151
- } & {
1152
- afterAttach(): void;
1153
- }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1154
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1155
- maxFeatureScreenDensity: {
1156
- type: string;
1157
- description: string;
1158
- defaultValue: number;
1159
- };
1160
- fetchSizeLimit: {
1161
- type: string;
1162
- defaultValue: number;
1163
- description: string;
1164
- };
1165
- height: {
1166
- type: string;
1167
- defaultValue: number;
1168
- description: string;
1169
- };
1170
- mouseover: {
1171
- type: string;
1172
- description: string;
1173
- defaultValue: string;
1174
- contextVariable: string[];
1175
- };
1176
- jexlFilters: {
1177
- type: string;
1178
- description: string;
1179
- defaultValue: never[];
1180
- };
1181
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1182
- showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1183
- showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1184
- }>>, {
1185
- type: string;
1186
- id: string;
1187
- configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
1188
- rpcDriverName: string | undefined;
1189
- heightPreConfig: number | undefined;
1190
- userBpPerPxLimit: number | undefined;
1191
- userByteSizeLimit: number | undefined;
1192
- showLegend: boolean | undefined;
1193
- showTooltips: boolean | undefined;
1194
- }>;
1195
- export type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
1196
- export type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
1197
- export { type LegendItem } from './components/FloatingLegend.tsx';