@jbrowse/plugin-linear-genome-view 2.4.2 → 2.6.1

package/dist/LinearGenomeView/components/ImportForm.d.ts

@@ -1,7 +1,7 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 declare const _default: ({ model }: {
     model: LGV;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/dist/LinearGenomeView/components/ImportForm.js

@@ -37,8 +37,6 @@ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
 const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
 const util_2 = require("./util");
-// lazies
-const SearchResultsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SearchResultsDialog'))));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
         padding: theme.spacing(2),
@@ -55,7 +53,7 @@ exports.default = (0, mobx_react_1.observer)(function ({ model }) {
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
     const { assemblyNames, assemblyManager, textSearchManager } = session;
-    const { rankSearchResults, isSearchDialogDisplayed, error } = model;
+    const { rankSearchResults, error } = model;
     const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
     const [option, setOption] = (0, react_1.useState)();
     const searchScope = model.searchScope(selectedAsm);
@@ -98,7 +96,7 @@ exports.default = (0, mobx_react_1.observer)(function ({ model }) {
                 await navToOption(option);
             }
             else if ((_a = option === null || option === void 0 ? void 0 : option.results) === null || _a === void 0 ? void 0 : _a.length) {
-                model.setSearchResults(option.results, option.getLabel());
+                model.setSearchResults(option.results, option.getLabel(), selectedAsm);
             }
             else {
                 const [ref, rest] = (0, util_2.splitLast)(input, ':');
@@ -117,7 +115,7 @@ exports.default = (0, mobx_react_1.observer)(function ({ model }) {
                         assembly,
                     });
                     if (results.length > 1) {
-                        model.setSearchResults(results, input.toLowerCase());
+                        model.setSearchResults(results, input.toLowerCase(), selectedAsm);
                     }
                     else if (results.length === 1) {
                         await navToOption(results[0]);
@@ -168,7 +166,6 @@ exports.default = (0, mobx_react_1.observer)(function ({ model }) {
                             react_1.default.createElement(material_1.Button, { disabled: !value, className: classes.button, onClick: () => {
                                     model.setError(undefined);
                                     model.showAllRegionsInAssembly(selectedAsm);
-                                }, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
-        isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
+                                }, variant: "contained", color: "secondary" }, "Show all regions in assembly"))))))));
 });
 //# sourceMappingURL=ImportForm.js.map

package/dist/LinearGenomeView/components/ImportForm.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/LinearGenomeView.d.ts

@@ -1,7 +1,7 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 declare const LinearGenomeView: ({ model }: {
     model: LGV;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default LinearGenomeView;

package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -1,19 +1,41 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
-const Icons_1 = require("@jbrowse/core/ui/Icons");
 const ui_1 = require("@jbrowse/core/ui");
 const mobx_react_1 = require("mobx-react");
+// icons
+const Icons_1 = require("@jbrowse/core/ui/Icons");
 const TrackContainer_1 = __importDefault(require("./TrackContainer"));
 const TracksContainer_1 = __importDefault(require("./TracksContainer"));
-const ImportForm_1 = __importDefault(require("./ImportForm"));
-const GetSequenceDialog_1 = __importDefault(require("./GetSequenceDialog"));
-const SearchResultsDialog_1 = __importDefault(require("./SearchResultsDialog"));
+const ImportForm = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ImportForm'))));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     note: {
         textAlign: 'center',
@@ -28,13 +50,11 @@ const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
         return react_1.default.createElement(ui_1.LoadingEllipses, { variant: "h6" });
     }
     if (!hasDisplayedRegions || error) {
-        return react_1.default.createElement(ImportForm_1.default, { model: model });
+        return react_1.default.createElement(ImportForm, { model: model });
     }
     const MiniControlsComponent = model.MiniControlsComponent();
     const HeaderComponent = model.HeaderComponent();
     return (react_1.default.createElement("div", { style: { position: 'relative' } },
-        model.seqDialogDisplayed ? (react_1.default.createElement(GetSequenceDialog_1.default, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
-        model.isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog_1.default, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
         react_1.default.createElement(HeaderComponent, { model: model }),
         react_1.default.createElement(MiniControlsComponent, { model: model }),
         react_1.default.createElement(TracksContainer_1.default, { model: model }, !tracks.length ? (react_1.default.createElement(material_1.Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (react_1.default.createElement(react_1.default.Fragment, null,

package/dist/LinearGenomeView/components/LinearGenomeView.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAmC;AACnC,4CAAyD;AACzD,uCAA0C;AAC1C,yCAAkD;AAClD,2CAAqC;AAErC,QAAQ;AACR,kDAA2E;AAI3E,sEAA6C;AAC7C,wEAA+C;AAE/C,MAAM,UAAU,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,cAAc,GAAC,CAAC,CAAA;AAIrD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,aAAa,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAChC;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,gBAAgB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9D,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IACjE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,IAAI,CAAC,WAAW,IAAI,CAAC,KAAK,EAAE;QAC1B,OAAO,8BAAC,oBAAe,IAAC,OAAO,EAAC,IAAI,GAAG,CAAA;KACxC;IACD,IAAI,CAAC,mBAAmB,IAAI,KAAK,EAAE;QACjC,OAAO,8BAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACpC;IAED,MAAM,qBAAqB,GAAG,KAAK,CAAC,qBAAqB,EAAE,CAAA;IAC3D,MAAM,eAAe,GAAG,KAAK,CAAC,eAAe,EAAE,CAAA;IAE/C,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAClC,8BAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,8BAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI;QACvC,8BAAC,yBAAe,IAAC,KAAK,EAAE,KAAK,IAC1B,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAChB,8BAAC,gBAAK,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAE,OAAO,CAAC,IAAI,IAC9C,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC3B;YACE,8BAAC,qBAAU,4BAA+B;YAC1C,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,EACvB,SAAS,EAAE,8BAAC,qBAAiB,OAAG,0BAGzB,CACR,CACJ,CAAC,CAAC,CAAC,CACF,uCAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAQ,CACvC,CACK,CACT,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,wBAAc,IAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CAC9D,CAAC,CACH,CACe,CACd,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,gBAAgB,CAAA"}

package/dist/LinearGenomeView/components/MiniControls.d.ts

@@ -1,6 +1,6 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare const MiniControls: (props: {
+declare const MiniControls: ({ model, }: {
     model: LinearGenomeViewModel;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 export default MiniControls;

package/dist/LinearGenomeView/components/MiniControls.js

@@ -1,55 +1,35 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
+const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
-const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
 // icons
 const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
 const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
 const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
-const MiniControls = (0, mobx_react_1.observer)((props) => {
-    const { model } = props;
+const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
+const mui_1 = require("tss-react/mui");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    bg: {
+        position: 'absolute',
+        right: 0,
+        zIndex: 1001,
+        background: theme.palette.background.paper,
+    },
+}));
+const MiniControls = (0, mobx_react_1.observer)(function ({ model, }) {
+    const { classes } = useStyles();
     const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor, hideHeader } = model;
-    const [anchorEl, setAnchorEl] = (0, react_1.useState)();
-    return hideHeader ? (react_1.default.createElement("div", { style: { position: 'absolute', right: '0px', zIndex: '1001' } },
-        react_1.default.createElement(material_1.Paper, { style: { background: '#aaa7' } },
-            react_1.default.createElement(material_1.IconButton, { onClick: event => setAnchorEl(event.currentTarget) },
-                react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
-            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1 },
-                react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
-            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1 },
-                react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })),
-            react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
-                    callback();
-                    setAnchorEl(undefined);
-                }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() })))) : null;
+    return hideHeader ? (react_1.default.createElement(material_1.Paper, { className: classes.bg },
+        react_1.default.createElement(CascadingMenuButton_1.default, { menuItems: model.menuItems() },
+            react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1 },
+            react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1 },
+            react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })))) : null;
 });
 exports.default = MiniControls;
 //# sourceMappingURL=MiniControls.js.map

package/dist/LinearGenomeView/components/MiniControls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MiniControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/MiniControls.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAAiD;AAEjD,QAAQ;AACR,wEAA+C;AAC/C,0EAAiD;AACjD,8FAA6D;AAI7D,+FAAsE;AACtE,uCAA0C;AAE1C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,EAAE,EAAE;QACF,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,IAAI;QACZ,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACtC,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC1E,OAAO,UAAU,CAAC,CAAC,CAAC,CAClB,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,EAAE;QAC1B,8BAAC,6BAAmB,IAAC,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE;YAC/C,8BAAC,2BAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACV;QACtB,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;YAE7D,8BAAC,iBAAO,IAAC,QAAQ,EAAC,OAAO,GAAG,CACjB;QACb,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;YAE7D,8BAAC,gBAAM,IAAC,QAAQ,EAAC,OAAO,GAAG,CAChB,CACP,CACT,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,kBAAe,YAAY,CAAA"}

package/dist/LinearGenomeView/components/OverviewRubberband.d.ts

@@ -6,5 +6,5 @@ declare const _default: ({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;
     ControlComponent?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/dist/LinearGenomeView/components/OverviewScalebar.d.ts

@@ -5,12 +5,12 @@ declare const Polygon: ({ model, overview, useOffset, }: {
     model: LGV;
     overview: Base1DViewModel;
     useOffset?: boolean | undefined;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 type LGV = LinearGenomeViewModel;
 declare const _default: ({ model, children, }: {
     model: LGV;
     children: React.ReactNode;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;
 export { Polygon };
 export { default as Cytobands } from './Cytobands';

package/dist/LinearGenomeView/components/OverviewScalebar.js

@@ -66,6 +66,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         position: 'relative',
     },
     overviewSvg: {
+        pointerEvents: 'none',
         width: '100%',
         position: 'absolute',
     },
@@ -77,11 +78,14 @@ const Polygon = (0, mobx_react_1.observer)(function ({ model, overview, useOffse
     const { contentBlocks, totalWidthPxWithoutBorders } = dynamicBlocks;
     const { tertiary, primary } = theme.palette;
     const polygonColor = tertiary ? tertiary.light : primary.light;
+    // catches possible null from at's below
     if (!contentBlocks.length) {
         return null;
     }
-    const first = contentBlocks[0];
-    const last = contentBlocks[contentBlocks.length - 1];
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const first = contentBlocks.at(0);
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const last = contentBlocks.at(-1);
     const topLeft = (overview.bpToPx({
         ...first,
         coord: first.reversed ? first.end : first.start,
@@ -124,7 +128,7 @@ const OverviewBox = (0, mobx_react_1.observer)(function ({ scale, model, block,
         react_1.default.createElement(material_1.Typography, { style: {
                 left: block.offsetPx + 3,
                 color: canDisplayCytobands
-                    ? theme.palette.primary.contrastText
+                    ? theme.palette.text.primary
                     : refNameColor,
             }, className: classes.scalebarRefName }, refName),
         react_1.default.createElement("div", { className: cx(classes.scalebarContig, canDisplayCytobands
@@ -154,15 +158,18 @@ const Scalebar = (0, mobx_react_1.observer)(function ({ model, scale, overview,
     const overviewVisibleRegions = overview.dynamicBlocks;
     const { tertiary, primary } = theme.palette;
     const scalebarColor = tertiary ? tertiary.light : primary.light;
+    // catches possible null from at's below
     if (!visibleRegions.length) {
         return null;
     }
-    const first = visibleRegions[0];
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const first = visibleRegions.at(0);
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const last = visibleRegions.at(-1);
     const firstOverviewPx = overview.bpToPx({
         ...first,
         coord: first.reversed ? first.end : first.start,
     }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
     const lastOverviewPx = overview.bpToPx({
         ...last,
         coord: last.reversed ? last.start : last.end,

package/dist/LinearGenomeView/components/OverviewScalebar.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts

@@ -0,0 +1,10 @@
+import React from 'react';
+import { AutocompleteRenderInputParams, TextFieldProps as TFP } from '@mui/material';
+export default function AutocompleteTextField({ TextFieldProps, inputBoxVal, params, showHelp, setInputValue, setCurrentSearch, }: {
+    TextFieldProps: TFP;
+    inputBoxVal: string;
+    showHelp?: boolean;
+    params: AutocompleteRenderInputParams;
+    setInputValue: (arg: string) => void;
+    setCurrentSearch: (arg: string) => void;
+}): React.JSX.Element;

package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js

@@ -0,0 +1,22 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+// locals
+const EndAdornment_1 = __importDefault(require("./EndAdornment"));
+function AutocompleteTextField({ TextFieldProps, inputBoxVal, params, showHelp, setInputValue, setCurrentSearch, }) {
+    const { helperText, InputProps = {} } = TextFieldProps;
+    return (react_1.default.createElement(material_1.TextField, { onBlur: () => 
+        // this is used to restore a refName or the non-user-typed input
+        // to the box on blurring
+        setInputValue(inputBoxVal), ...params, ...TextFieldProps, size: "small", helperText: helperText, InputProps: {
+            ...params.InputProps,
+            ...InputProps,
+            endAdornment: (react_1.default.createElement(EndAdornment_1.default, { showHelp: showHelp, endAdornment: params.InputProps.endAdornment })),
+        }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
+}
+exports.default = AutocompleteTextField;
+//# sourceMappingURL=AutocompleteTextField.js.map

package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AutocompleteTextField.js","sourceRoot":"","sources":["../../../../src/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAIsB;AAEtB,SAAS;AACT,kEAAyC;AAEzC,SAAwB,qBAAqB,CAAC,EAC5C,cAAc,EACd,WAAW,EACX,MAAM,EACN,QAAQ,EACR,aAAa,EACb,gBAAgB,GAQjB;IACC,MAAM,EAAE,UAAU,EAAE,UAAU,GAAG,EAAE,EAAE,GAAG,cAAc,CAAA;IACtD,OAAO,CACL,8BAAC,oBAAS,IACR,MAAM,EAAE,GAAG,EAAE;QACX,gEAAgE;QAChE,yBAAyB;QACzB,aAAa,CAAC,WAAW,CAAC,KAExB,MAAM,KACN,cAAc,EAClB,IAAI,EAAC,OAAO,EACZ,UAAU,EAAE,UAAU,EACtB,UAAU,EAAE;YACV,GAAG,MAAM,CAAC,UAAU;YACpB,GAAG,UAAU;YAEb,YAAY,EAAE,CACZ,8BAAC,sBAAY,IACX,QAAQ,EAAE,QAAQ,EAClB,YAAY,EAAE,MAAM,CAAC,UAAU,CAAC,YAAY,GAC5C,CACH;SACF,EACD,WAAW,EAAC,qBAAqB,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,GAC/C,CACH,CAAA;AACH,CAAC;AA1CD,wCA0CC"}

package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts

@@ -0,0 +1,5 @@
+import React from 'react';
+export default function EndAdornment({ showHelp, endAdornment, }: {
+    showHelp?: boolean;
+    endAdornment: React.ReactNode;
+}): React.JSX.Element;

package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js

@@ -0,0 +1,52 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+// icons
+const Search_1 = __importDefault(require("@mui/icons-material/Search"));
+const Help_1 = __importDefault(require("@mui/icons-material/Help"));
+// lazy
+const HelpDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HelpDialog'))));
+function HelpAdornment() {
+    const [isHelpDialogDisplayed, setHelpDialogDisplayed] = (0, react_1.useState)(false);
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
+            react_1.default.createElement(Help_1.default, { fontSize: "small" })),
+        isHelpDialogDisplayed ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
+            react_1.default.createElement(HelpDialog, { handleClose: () => setHelpDialogDisplayed(false) }))) : null));
+}
+function EndAdornment({ showHelp, endAdornment, }) {
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.InputAdornment, { position: "end", style: { marginRight: 7 } },
+            react_1.default.createElement(Search_1.default, { fontSize: "small" }),
+            showHelp ? react_1.default.createElement(HelpAdornment, null) : null),
+        endAdornment));
+}
+exports.default = EndAdornment;
+//# sourceMappingURL=EndAdornment.js.map

package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts}

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 export default function HelpDialog({ handleClose, }: {
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../../src/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAA6E;AAC7E,yCAAyC;AAEzC,SAAwB,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,QACJ,QAAQ,EAAC,IAAI,EACb,OAAO,EAAE,WAAW,EACpB,KAAK,EAAC,sBAAsB;QAE5B,8BAAC,wBAAa;YACZ,sDAAkB;YAClB;gBACE,+IAGK;gBACL;;oBAEM,6DAA2B;;oBAAI,4DAA0B;wKAI1D,CACF;YACL,6DAAyB;YACzB;gBACE;oBACE,mDAAiB;6DACd;gBACL;oBACE,mDAAiB;+CACd;gBACL;oBACE,0EAAwC;mFAErC;gBACL;oBACE,oEAAkC;0EAE/B;gBACL;oBACE,6DAA2B;8DACxB;gBACL;oBACE,yEAAuC;0FAEpC;gBACL;oBACE,2DAAyB;sEAEtB,CACF,CACS;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,YAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AAhED,6BAgEC"}

package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts

@@ -0,0 +1,18 @@
+import React from 'react';
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+import { TextFieldProps as TFP } from '@mui/material';
+import { LinearGenomeViewModel } from '../../model';
+declare const _default: ({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, maxWidth, TextFieldProps, }: {
+    model: LinearGenomeViewModel;
+    onSelect?: ((region: BaseResult) => void) | undefined;
+    onChange?: ((val: string) => void) | undefined;
+    assemblyName?: string | undefined;
+    value?: string | undefined;
+    fetchResults: (query: string) => Promise<BaseResult[]>;
+    style?: React.CSSProperties | undefined;
+    minWidth?: number | undefined;
+    maxWidth?: number | undefined;
+    showHelp?: boolean | undefined;
+    TextFieldProps?: TFP | undefined;
+}) => React.JSX.Element;
+export default _default;