@jbrowse/plugin-linear-genome-view 2.4.2 → 2.6.1

package/dist/index.js

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.SVGRuler = exports.totalHeight = exports.SVGTracks = exports.renderToSvg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.baseLinearDisplayConfigSchema = exports.BlockMsg = exports.linearBareDisplayConfigSchemaFactory = void 0;
+exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.SVGRuler = exports.totalHeight = exports.SVGTracks = exports.renderToSvg = exports.SearchBox = exports.RefNameAutocomplete = exports.TooLargeMessage = exports.FeatureDensityMixin = exports.TrackHeightMixin = exports.BaseLinearDisplayComponent = exports.BlockMsg = exports.BaseLinearDisplay = exports.baseLinearDisplayConfigSchema = exports.linearBareDisplayConfigSchemaFactory = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const util_1 = require("@jbrowse/core/util");
 // icons
@@ -76,10 +76,13 @@ exports.default = LinearGenomeViewPlugin;
 var LinearBareDisplay_2 = require("./LinearBareDisplay");
 Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.configSchemaFactory; } });
 var BaseLinearDisplay_2 = require("./BaseLinearDisplay");
-Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
 Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_2.baseLinearDisplayConfigSchema; } });
-Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
 Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplay; } });
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
+Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "TrackHeightMixin", { enumerable: true, get: function () { return BaseLinearDisplay_2.TrackHeightMixin; } });
+Object.defineProperty(exports, "FeatureDensityMixin", { enumerable: true, get: function () { return BaseLinearDisplay_2.FeatureDensityMixin; } });
+Object.defineProperty(exports, "TooLargeMessage", { enumerable: true, get: function () { return BaseLinearDisplay_2.TooLargeMessage; } });
 var LinearGenomeView_2 = require("./LinearGenomeView");
 Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_2.RefNameAutocomplete; } });
 Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_2.SearchBox; } });

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,6CAAgF;AAEhF,QAAQ;AACR,8EAAyD;AAEzD,SAAS;AACT,2DAI4B;AAC5B,4EAAoD;AACpD,uEAI2B;AAE3B,8EAAsD;AAEtD,kEAA0C;AAC1C,8DAAsC;AACtC,sFAA8D;AAE9D,MAAqB,sBAAuB,SAAQ,gBAAM;IAA1D;;QACE,SAAI,GAAG,wBAAwB,CAAA;QAE/B,YAAO,GAAG;YACR,0BAA0B,EAA1B,8CAA0B;YAC1B,iBAAiB,EAAjB,qCAAiB;YACjB,6BAA6B,EAA7B,iDAA6B;YAC7B,SAAS,EAAT,4BAAS;YACT,YAAY,EAAZ,+BAAY;YACZ,gBAAgB,EAAhB,mCAAgB;SACjB,CAAA;IAsBH,CAAC;IApBC,OAAO,CAAC,aAA4B;QAClC,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QAC5B,IAAA,oBAAW,EAAC,aAAa,CAAC,CAAA;QAC1B,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAClC,IAAA,0BAAiB,EAAC,aAAa,CAAC,CAAA;QAChC,IAAA,2BAAkB,EAAC,aAAa,CAAC,CAAA;QACjC,IAAA,gCAAuB,EAAC,aAAa,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,IAAA,4BAAqB,EAAC,aAAa,CAAC,SAAS,CAAC,EAAE;YAClD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,oBAAoB;gBAC3B,IAAI,EAAE,mBAAa;gBACnB,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC,CAAA;gBACzC,CAAC;aACF,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAhCD,yCAgCC;AAID,yDAAiG;AAAxF,yIAAA,mBAAmB,OAAwC;AACpE,yDAK4B;AAJ1B,6GAAA,QAAQ,OAAA;AACR,kIAAA,6BAA6B,OAAA;AAC7B,+HAAA,0BAA0B,OAAA;AAC1B,sHAAA,iBAAiB,OAAA;AAEnB,uDAK2B;AAHzB,uHAAA,mBAAmB,OAAA;AAEnB,6GAAA,SAAS,OAAA;AAEX,4FAK6D;AAJ3D,kHAAA,WAAW,OAAA;AACX,gHAAA,SAAS,OAAA;AACT,kHAAA,WAAW,OAAA;AACX,+GAAA,QAAQ,OAAA;AAEV,2DAG6B;AAF3B,2IAAA,YAAY,OAAyC;AACrD,oIAAA,YAAY,OAAkC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,6CAAgF;AAEhF,QAAQ;AACR,8EAAyD;AAEzD,SAAS;AACT,2DAI4B;AAC5B,4EAAoD;AACpD,uEAI2B;AAE3B,8EAAsD;AACtD,kEAA0C;AAC1C,8DAAsC;AACtC,sFAA8D;AAE9D,MAAqB,sBAAuB,SAAQ,gBAAM;IAA1D;;QACE,SAAI,GAAG,wBAAwB,CAAA;QAE/B,YAAO,GAAG;YACR,0BAA0B,EAA1B,8CAA0B;YAC1B,iBAAiB,EAAjB,qCAAiB;YACjB,6BAA6B,EAA7B,iDAA6B;YAC7B,SAAS,EAAT,4BAAS;YACT,YAAY,EAAZ,+BAAY;YACZ,gBAAgB,EAAhB,mCAAgB;SACjB,CAAA;IAsBH,CAAC;IApBC,OAAO,CAAC,aAA4B;QAClC,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QAC5B,IAAA,oBAAW,EAAC,aAAa,CAAC,CAAA;QAC1B,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAClC,IAAA,0BAAiB,EAAC,aAAa,CAAC,CAAA;QAChC,IAAA,2BAAkB,EAAC,aAAa,CAAC,CAAA;QACjC,IAAA,gCAAuB,EAAC,aAAa,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,IAAA,4BAAqB,EAAC,aAAa,CAAC,SAAS,CAAC,EAAE;YAClD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,oBAAoB;gBAC3B,IAAI,EAAE,mBAAa;gBACnB,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC,CAAA;gBACzC,CAAC;aACF,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAhCD,yCAgCC;AAQD,yDAAiG;AAAxF,yIAAA,mBAAmB,OAAwC;AACpE,yDAQ4B;AAP1B,kIAAA,6BAA6B,OAAA;AAC7B,sHAAA,iBAAiB,OAAA;AACjB,6GAAA,QAAQ,OAAA;AACR,+HAAA,0BAA0B,OAAA;AAC1B,qHAAA,gBAAgB,OAAA;AAChB,wHAAA,mBAAmB,OAAA;AACnB,oHAAA,eAAe,OAAA;AAEjB,uDAK2B;AAFzB,uHAAA,mBAAmB,OAAA;AACnB,6GAAA,SAAS,OAAA;AAEX,4FAK6D;AAJ3D,kHAAA,WAAW,OAAA;AACX,gHAAA,SAAS,OAAA;AACT,kHAAA,WAAW,OAAA;AACX,+GAAA,QAAQ,OAAA;AAEV,2DAG6B;AAF3B,2IAAA,YAAY,OAAyC;AACrD,oIAAA,YAAY,OAAkC"}

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -3,7 +3,7 @@ import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default BaseLinearDisplay;
 export { default as Tooltip } from './Tooltip';
 export { default as BlockMsg } from './BlockMsg';

package/esm/BaseLinearDisplay/components/Block.d.ts

@@ -3,13 +3,13 @@ import { BaseBlock } from '@jbrowse/core/util/blockTypes';
 declare const ContentBlock: ({ block, children, }: {
     block: BaseBlock;
     children: React.ReactNode;
-}) => JSX.Element;
+}) => React.JSX.Element;
 declare function ElidedBlock({ width }: {
     width: number;
-}): JSX.Element;
+}): React.JSX.Element;
 declare function InterRegionPaddingBlock({ boundary, width, style, }: {
     boundary: boolean;
     width: number;
     style?: React.CSSProperties;
-}): JSX.Element;
+}): React.JSX.Element;
 export { ContentBlock, ElidedBlock, InterRegionPaddingBlock };

package/esm/BaseLinearDisplay/components/BlockMsg.d.ts

@@ -6,4 +6,4 @@ export default function BlockMsg({ message, severity, buttonText, icon, action,
     buttonText?: string;
     icon?: React.ReactNode;
     action?: () => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const useStyles: (params: void, styleOverrides?: {
     props: any;
@@ -11,10 +11,10 @@ declare const useStyles: (params: void, styleOverrides?: {
 };
 declare const RenderedBlocks: ({ model, }: {
     model: BaseLinearDisplayModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 declare function LinearBlocks({ model }: {
     model: BaseLinearDisplayModel;
-}): JSX.Element;
+}): React.JSX.Element;
 export { RenderedBlocks, useStyles };
 declare const _default: typeof LinearBlocks;
 export default _default;

package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts

@@ -1,11 +1,11 @@
-/// <reference types="react" />
-import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import React from 'react';
+import { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
 declare function TooLargeMessage({ model, }: {
     model: {
         regionTooLargeReason: string;
-        estimatedRegionsStats?: Stats;
-        updateStatsLimit: (s?: Stats) => void;
+        featureDensityStats?: FeatureDensityStats;
+        setFeatureDensityStatsLimit: (s?: FeatureDensityStats) => void;
         reload: () => void;
     };
-}): JSX.Element;
+}): React.JSX.Element;
 export default TooLargeMessage;

package/esm/BaseLinearDisplay/components/TooLargeMessage.js

@@ -4,10 +4,14 @@ import BlockMsg from '../components/BlockMsg';
 function TooLargeMessage({ model, }) {
     const { regionTooLargeReason } = model;
     return (React.createElement(BlockMsg, { severity: "warning", action: () => {
-            model.updateStatsLimit(model.estimatedRegionsStats);
+            model.setFeatureDensityStatsLimit(model.featureDensityStats);
             model.reload();
-        }, buttonText: "Force load", message: `${regionTooLargeReason ? `${regionTooLargeReason}. ` : ''}
-      Zoom in to see features or force load (may be slow).` }));
+        }, buttonText: "Force load", message: [
+            regionTooLargeReason,
+            'Zoom in to see features or force load (may be slow)',
+        ]
+            .filter(f => !!f)
+            .join('. ') }));
 }
 export default TooLargeMessage;
 //# sourceMappingURL=TooLargeMessage.js.map

package/esm/BaseLinearDisplay/components/TooLargeMessage.js.map

@@ -1 +1 @@
-{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAGzB,SAAS;AACT,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAE7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAA;YACnD,KAAK,CAAC,MAAM,EAAE,CAAA;QAChB,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,GAAG,oBAAoB,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}
+{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAGzB,SAAS;AACT,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAE7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,KAAK,CAAC,2BAA2B,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAA;YAC5D,KAAK,CAAC,MAAM,EAAE,CAAA;QAChB,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE;YACP,oBAAoB;YACpB,qDAAqD;SACtD;aACE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;aAChB,IAAI,CAAC,IAAI,CAAC,GACb,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}

package/esm/BaseLinearDisplay/components/Tooltip.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 type Coord = [number, number];
 declare const Tooltip: ({ model, clientMouseCoord, }: {
     model: BaseLinearDisplayModel;
     clientMouseCoord: Coord;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 export default Tooltip;

package/esm/BaseLinearDisplay/index.d.ts

@@ -1,5 +1,8 @@
 export { default as baseLinearDisplayConfigSchema } from './models/configSchema';
-export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
 export type { BlockModel } from './models/serverSideRenderedBlock';
-export type { BaseLinearDisplayModel, BaseLinearDisplayStateModel, } from './models/BaseLinearDisplayModel';
+export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
+export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BaseLinearDisplayStateModel, } from './models/BaseLinearDisplayModel';
 export { default as BaseLinearDisplayComponent, Tooltip, BlockMsg, } from './components/BaseLinearDisplay';
+export { default as TrackHeightMixin } from './models/TrackHeightMixin';
+export { default as FeatureDensityMixin } from './models/FeatureDensityMixin';
+export { default as TooLargeMessage } from './components/TooLargeMessage';

package/esm/BaseLinearDisplay/index.js

@@ -1,4 +1,7 @@
 export { default as baseLinearDisplayConfigSchema } from './models/configSchema';
 export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
 export { default as BaseLinearDisplayComponent, Tooltip, BlockMsg, } from './components/BaseLinearDisplay';
+export { default as TrackHeightMixin } from './models/TrackHeightMixin';
+export { default as FeatureDensityMixin } from './models/FeatureDensityMixin';
+export { default as TooLargeMessage } from './components/TooLargeMessage';
 //# sourceMappingURL=index.js.map

package/esm/BaseLinearDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BaseLinearDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,6BAA6B,EAAE,MAAM,uBAAuB,CAAA;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,iCAAiC,CAAA;AAMnE,OAAO,EACL,OAAO,IAAI,0BAA0B,EACrC,OAAO,EACP,QAAQ,GACT,MAAM,gCAAgC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BaseLinearDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,6BAA6B,EAAE,MAAM,uBAAuB,CAAA;AAEhF,OAAO,EAAE,iBAAiB,EAAE,MAAM,iCAAiC,CAAA;AAMnE,OAAO,EACL,OAAO,IAAI,0BAA0B,EACrC,OAAO,EACP,QAAQ,GACT,MAAM,gCAAgC,CAAA;AACvC,OAAO,EAAE,OAAO,IAAI,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AACvE,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,8BAA8B,CAAA;AAC7E,OAAO,EAAE,OAAO,IAAI,eAAe,EAAE,MAAM,8BAA8B,CAAA"}

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -2,9 +2,7 @@ import React from 'react';
 import { ThemeOptions } from '@mui/material';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Feature } from '@jbrowse/core/util';
-import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { BaseBlock } from '@jbrowse/core/util/blockTypes';
-import { Region } from '@jbrowse/core/util/types';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
 import { Instance } from 'mobx-state-tree';
 import { ExportSvgOptions } from '../../LinearGenomeView';
@@ -16,15 +14,20 @@ export interface Layout {
     name: string;
 }
 type LayoutRecord = [number, number, number, number];
+export interface ExportSvgDisplayOptions extends ExportSvgOptions {
+    overrideHeight: number;
+    theme: ThemeOptions;
+}
 export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    /**
-     * #property
-     */
     heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
     /**
      * #property
      * updated via autorun
@@ -78,14 +81,33 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #property
      */
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    /**
-     * #property
-     */
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        maxFeatureScreenDensity: {
+            type: string;
+            description: string;
+            defaultValue: number;
+        };
+        fetchSizeLimit: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        height: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        mouseover: {
+            type: string;
+            description: string;
+            defaultValue: string;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }, {
     rendererTypeName: string;
     error: unknown;
+    message: string | undefined;
 } & {
     readonly RenderingComponent: React.FC<{
         model: {
@@ -95,6 +117,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -102,6 +125,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -114,13 +138,17 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
-            rendererTypeName: string;
+            rendererTypeName: string; /**
+             * #getter
+             */
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -130,21 +158,52 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): null;
 } & {
+    setMessage(arg?: string | undefined): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
-    currBpPerPx: number;
     scrollTop: number;
-    message: string;
+} & {
+    readonly height: number;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+} & {
+    featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+    featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+    currStatsBpPerPx: number;
+} & {
+    readonly currentBytesRequested: number;
+    readonly currentFeatureScreenDensity: number;
+    readonly maxFeatureScreenDensity: any; /**
+     * #property
+     * updated via autorun
+     */
+    readonly featureDensityStatsReady: boolean;
+    readonly maxAllowableBytes: number;
+} & {
+    afterAttach(): void;
+} & {
+    setCurrStatsBpPerPx(n: number): void;
+    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+    setFeatureDensityStatsP(arg: any): void;
+    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    clearFeatureDensityStats(): void;
+} & {
+    readonly regionTooLarge: boolean;
+    readonly regionTooLargeReason: string;
+} & {
+    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
+} & {
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    estimatedRegionsStatsP: Promise<Stats> | undefined;
-    estimatedRegionsStats: Stats | undefined;
 } & {
-    readonly height: number;
     /**
      * #getter
      */
@@ -199,73 +258,11 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * #getter
      */
     searchFeatureByID(id: string): LayoutRecord | undefined;
-    /**
-     * #getter
-     */
-    readonly currentBytesRequested: number;
-    /**
-     * #getter
-     */
-    readonly currentFeatureScreenDensity: number;
-    /**
-     * #getter
-     */
-    readonly maxFeatureScreenDensity: any;
-    /**
-     * #getter
-     */
-    readonly estimatedStatsReady: boolean;
-    /**
-     * #getter
-     */
-    readonly maxAllowableBytes: number;
-} & {
-    /**
-     * #action
-     */
-    setMessage(message: string): void;
 } & {
-    afterAttach(): void;
-    /**
-     * #action
-     */
-    estimateRegionsStats(): Promise<Stats>;
-    /**
-     * #action
-     */
-    setRegionsStatsP(arg: any): void;
-    /**
-     * #action
-     */
-    setRegionsStats(estimatedRegionsStats?: Stats): void;
-    /**
-     * #action
-     */
-    clearRegionsStats(): void;
-    /**
-     * #action
-     */
-    setHeight(displayHeight: number): number;
-    /**
-     * #action
-     */
-    resizeHeight(distance: number): number;
-    /**
-     * #action
-     */
-    setScrollTop(scrollTop: number): void;
-    /**
-     * #action
-     */
-    updateStatsLimit(stats?: Stats): void;
     /**
      * #action
      */
     addBlock(key: string, block: BaseBlock): void;
-    /**
-     * #action
-     */
-    setCurrBpPerPx(n: number): void;
     /**
      * #action
      */
@@ -281,51 +278,17 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    setFeatureIdUnderMouse(feature: string | undefined): void;
-    /**
-     * #action
-     */
-    reload(): void;
+    setFeatureIdUnderMouse(feature?: string): void;
     /**
      * #action
      */
     setContextMenuFeature(feature?: Feature): void;
-} & {
-    /**
-     * #getter
-     * region is too large if:
-     * - stats are ready
-     * - region is greater than 20kb (don't warn when zoomed in less than that)
-     * - and bytes is greater than max allowed bytes or density greater than max density
-     */
-    readonly regionTooLarge: boolean;
-    /**
-     * #getter
-     * only shows a message of bytes requested is defined, the feature density
-     * based stats don't produce any helpful message besides to zoom in
-     */
-    readonly regionTooLargeReason: string;
 } & {
     /**
      * #action
      */
     reload(): Promise<void>;
 } & {
-    afterAttach(): void;
-} & {
-    /**
-     * #method
-     */
-    regionCannotBeRenderedText(_region: Region): "" | "Force load to see features";
-    /**
-     * #method
-     * @param region -
-     * @returns falsy if the region is fine to try rendering. Otherwise,
-     *  return a react node + string of text.
-     *  string of text describes why it cannot be rendered
-     *  react node allows user to force load at current setting
-     */
-    regionCannotBeRendered(_region: Region): JSX.Element | null;
     /**
      * #method
      */
@@ -342,19 +305,18 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #method
      */
-    renderSvg(opts: ExportSvgOptions & {
-        overrideHeight: number;
-        theme: ThemeOptions;
-    }): Promise<JSX.Element>;
+    renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
+    afterAttach(): void;
 }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    /**
-     * #property
-     */
     heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
     /**
      * #property
      * updated via autorun
@@ -408,14 +370,33 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #property
      */
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    /**
-     * #property
-     */
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        maxFeatureScreenDensity: {
+            type: string;
+            description: string;
+            defaultValue: number;
+        };
+        fetchSizeLimit: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        height: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        mouseover: {
+            type: string;
+            description: string;
+            defaultValue: string;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }>>, {
     type: string;
     id: string;
+    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
     rpcDriverName: string | undefined;
     heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;