@jbrowse/plugin-linear-genome-view 2.4.2 → 2.6.1

package/esm/index.d.ts

@@ -10,6 +10,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: string;
                 rpcDriverName: string | undefined;
                 heightPreConfig: number | undefined;
+                userBpPerPxLimit: number | undefined;
+                userByteSizeLimit: number | undefined;
                 blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -101,11 +103,37 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reload(): void;
                     beforeDestroy(): void;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-                userBpPerPxLimit: number | undefined;
-                userByteSizeLimit: number | undefined;
+                configuration: {
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: unknown): any;
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                 rendererTypeName: string;
                 error: unknown;
+                message: string | undefined;
             } & {
                 readonly RenderingComponent: import("react").FC<{
                     model: {
@@ -115,6 +143,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                         type: import("mobx-state-tree").ISimpleType<string>;
@@ -122,6 +151,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     }, {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                     onHorizontalScroll?: Function | undefined;
                     blockState?: Record<string, any> | undefined;
@@ -134,6 +164,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                         type: import("mobx-state-tree").ISimpleType<string>;
@@ -141,6 +172,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     }, {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 }> | null;
                 readonly adapterConfig: any;
@@ -150,21 +182,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly DisplayMessageComponent: import("react").FC<any> | undefined;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-                regionCannotBeRendered(): undefined;
+                regionCannotBeRendered(): null;
             } & {
+                setMessage(arg?: string | undefined): void;
                 setError(error?: unknown): void;
                 setRpcDriverName(rpcDriverName: string): void;
                 reload(): void;
             } & {
-                currBpPerPx: number;
                 scrollTop: number;
-                message: string;
+            } & {
+                readonly height: number;
+            } & {
+                setScrollTop(scrollTop: number): void;
+                setHeight(displayHeight: number): number;
+                resizeHeight(distance: number): number;
+            } & {
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+                currStatsBpPerPx: number;
+            } & {
+                readonly currentBytesRequested: number;
+                readonly currentFeatureScreenDensity: number;
+                readonly maxFeatureScreenDensity: any;
+                readonly featureDensityStatsReady: boolean;
+                readonly maxAllowableBytes: number;
+            } & {
+                afterAttach(): void;
+            } & {
+                setCurrStatsBpPerPx(n: number): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
+            } & {
+                readonly regionTooLarge: boolean;
+                readonly regionTooLargeReason: string;
+            } & {
+                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+            } & {
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -178,55 +238,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
-                readonly currentBytesRequested: number;
-                readonly currentFeatureScreenDensity: number;
-                readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
-                readonly maxAllowableBytes: number;
-            } & {
-                setMessage(message: string): void;
             } & {
-                afterAttach(): void;
-                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-                setRegionsStatsP(arg: any): void;
-                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionsStats(): void;
-                setHeight(displayHeight: number): number;
-                resizeHeight(distance: number): number;
-                setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-                setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
-                reload(): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-            } & {
-                readonly regionTooLarge: boolean;
-                readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
             } & {
-                afterAttach(): void;
-            } & {
-                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
-                renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
-                    overrideHeight: number;
-                    theme: import("@mui/material").ThemeOptions;
-                }): Promise<JSX.Element>;
+                renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+                afterAttach(): void;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                 id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 type: import("mobx-state-tree").ISimpleType<string>;
                 rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             } & {
                 heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            } & {
+                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            } & {
                 blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -273,11 +310,33 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reload(): void;
                     beforeDestroy(): void;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }, {
                 rendererTypeName: string;
                 error: unknown;
+                message: string | undefined;
             } & {
                 readonly RenderingComponent: import("react").FC<{
                     model: {
@@ -287,6 +346,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                         type: import("mobx-state-tree").ISimpleType<string>;
@@ -294,6 +354,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     }, {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                     onHorizontalScroll?: Function | undefined;
                     blockState?: Record<string, any> | undefined;
@@ -306,6 +367,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                         type: import("mobx-state-tree").ISimpleType<string>;
@@ -313,6 +375,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     }, {
                         rendererTypeName: string;
                         error: unknown;
+                        message: string | undefined;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 }> | null;
                 readonly adapterConfig: any;
@@ -322,21 +385,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly DisplayMessageComponent: import("react").FC<any> | undefined;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-                regionCannotBeRendered(): undefined;
+                regionCannotBeRendered(): null;
             } & {
+                setMessage(arg?: string | undefined): void;
                 setError(error?: unknown): void;
                 setRpcDriverName(rpcDriverName: string): void;
                 reload(): void;
             } & {
-                currBpPerPx: number;
                 scrollTop: number;
-                message: string;
+            } & {
+                readonly height: number;
+            } & {
+                setScrollTop(scrollTop: number): void;
+                setHeight(displayHeight: number): number;
+                resizeHeight(distance: number): number;
+            } & {
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+                currStatsBpPerPx: number;
+            } & {
+                readonly currentBytesRequested: number;
+                readonly currentFeatureScreenDensity: number;
+                readonly maxFeatureScreenDensity: any;
+                readonly featureDensityStatsReady: boolean;
+                readonly maxAllowableBytes: number;
+            } & {
+                afterAttach(): void;
+            } & {
+                setCurrStatsBpPerPx(n: number): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
+            } & {
+                readonly regionTooLarge: boolean;
+                readonly regionTooLargeReason: string;
+            } & {
+                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+            } & {
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -350,55 +441,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
-                readonly currentBytesRequested: number;
-                readonly currentFeatureScreenDensity: number;
-                readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
-                readonly maxAllowableBytes: number;
-            } & {
-                setMessage(message: string): void;
             } & {
-                afterAttach(): void;
-                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-                setRegionsStatsP(arg: any): void;
-                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionsStats(): void;
-                setHeight(displayHeight: number): number;
-                resizeHeight(distance: number): number;
-                setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-                setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
-                reload(): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-            } & {
-                readonly regionTooLarge: boolean;
-                readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
             } & {
-                afterAttach(): void;
-            } & {
-                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
-                renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
-                    overrideHeight: number;
-                    theme: import("@mui/material").ThemeOptions;
-                }): Promise<JSX.Element>;
+                renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+                afterAttach(): void;
             }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
                 id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 type: import("mobx-state-tree").ISimpleType<string>;
                 rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             } & {
                 heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            } & {
+                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            } & {
                 blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -445,24 +513,50 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reload(): void;
                     beforeDestroy(): void;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }>>, {
                 type: string;
                 id: string;
+                configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
                 rpcDriverName: string | undefined;
                 heightPreConfig: number | undefined;
                 userBpPerPxLimit: number | undefined;
                 userByteSizeLimit: number | undefined;
             }>>;
             children?: import("react").ReactNode;
-        }) => JSX.Element;
+        }) => import("react").JSX.Element;
         BaseLinearDisplay: import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         } & {
             heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        } & {
+            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        } & {
             blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                 key: import("mobx-state-tree").ISimpleType<string>;
                 region: import("mobx-state-tree").IModelType<{
@@ -509,11 +603,33 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
                 beforeDestroy(): void;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                maxFeatureScreenDensity: {
+                    type: string;
+                    description: string;
+                    defaultValue: number;
+                };
+                fetchSizeLimit: {
+                    type: string;
+                    defaultValue: number;
+                    description: string;
+                };
+                height: {
+                    type: string;
+                    defaultValue: number;
+                    description: string;
+                };
+                mouseover: {
+                    type: string;
+                    description: string;
+                    defaultValue: string;
+                    contextVariable: string[];
+                };
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & {
             readonly RenderingComponent: import("react").FC<{
                 model: {
@@ -523,6 +639,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                     rendererTypeName: string;
                     error: unknown;
+                    message: string | undefined;
                 } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                     type: import("mobx-state-tree").ISimpleType<string>;
@@ -530,6 +647,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 }, {
                     rendererTypeName: string;
                     error: unknown;
+                    message: string | undefined;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 onHorizontalScroll?: Function | undefined;
                 blockState?: Record<string, any> | undefined;
@@ -542,6 +660,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                     rendererTypeName: string;
                     error: unknown;
+                    message: string | undefined;
                 } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                     type: import("mobx-state-tree").ISimpleType<string>;
@@ -549,6 +668,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 }, {
                     rendererTypeName: string;
                     error: unknown;
+                    message: string | undefined;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
             }> | null;
             readonly adapterConfig: any;
@@ -558,21 +678,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly DisplayMessageComponent: import("react").FC<any> | undefined;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-            regionCannotBeRendered(): undefined;
+            regionCannotBeRendered(): null;
         } & {
+            setMessage(arg?: string | undefined): void;
             setError(error?: unknown): void;
             setRpcDriverName(rpcDriverName: string): void;
             reload(): void;
         } & {
-            currBpPerPx: number;
             scrollTop: number;
-            message: string;
+        } & {
+            readonly height: number;
+        } & {
+            setScrollTop(scrollTop: number): void;
+            setHeight(displayHeight: number): number;
+            resizeHeight(distance: number): number;
+        } & {
+            featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+            featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+            currStatsBpPerPx: number;
+        } & {
+            readonly currentBytesRequested: number;
+            readonly currentFeatureScreenDensity: number;
+            readonly maxFeatureScreenDensity: any;
+            readonly featureDensityStatsReady: boolean;
+            readonly maxAllowableBytes: number;
+        } & {
+            afterAttach(): void;
+        } & {
+            setCurrStatsBpPerPx(n: number): void;
+            setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+            getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+            setFeatureDensityStatsP(arg: any): void;
+            setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+            clearFeatureDensityStats(): void;
+        } & {
+            readonly regionTooLarge: boolean;
+            readonly regionTooLargeReason: string;
+        } & {
+            regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+            regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+        } & {
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-            estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
-            readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
         } & {
@@ -586,55 +734,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
             getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
             getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
             searchFeatureByID(id: string): [number, number, number, number] | undefined;
-            readonly currentBytesRequested: number;
-            readonly currentFeatureScreenDensity: number;
-            readonly maxFeatureScreenDensity: any;
-            readonly estimatedStatsReady: boolean;
-            readonly maxAllowableBytes: number;
         } & {
-            setMessage(message: string): void;
-        } & {
-            afterAttach(): void;
-            estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-            setRegionsStatsP(arg: any): void;
-            setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-            clearRegionsStats(): void;
-            setHeight(displayHeight: number): number;
-            resizeHeight(distance: number): number;
-            setScrollTop(scrollTop: number): void;
-            updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-            setCurrBpPerPx(n: number): void;
             deleteBlock(key: string): void;
             selectFeature(feature: import("@jbrowse/core/util").Feature): void;
             clearFeatureSelection(): void;
-            setFeatureIdUnderMouse(feature: string | undefined): void;
-            reload(): void;
+            setFeatureIdUnderMouse(feature?: string | undefined): void;
             setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-        } & {
-            readonly regionTooLarge: boolean;
-            readonly regionTooLargeReason: string;
         } & {
             reload(): Promise<void>;
         } & {
-            afterAttach(): void;
-        } & {
-            regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-            regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             renderProps(): any;
         } & {
-            renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
-                overrideHeight: number;
-                theme: import("@mui/material").ThemeOptions;
-            }): Promise<JSX.Element>;
+            renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+            afterAttach(): void;
         }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         } & {
             heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        } & {
+            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        } & {
             blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                 key: import("mobx-state-tree").ISimpleType<string>;
                 region: import("mobx-state-tree").IModelType<{
@@ -681,17 +806,61 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
                 beforeDestroy(): void;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                maxFeatureScreenDensity: {
+                    type: string;
+                    description: string;
+                    defaultValue: number;
+                };
+                fetchSizeLimit: {
+                    type: string;
+                    defaultValue: number;
+                    description: string;
+                };
+                height: {
+                    type: string;
+                    defaultValue: number;
+                    description: string;
+                };
+                mouseover: {
+                    type: string;
+                    description: string;
+                    defaultValue: string;
+                    contextVariable: string[];
+                };
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         }>>, {
             type: string;
             id: string;
+            configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
             rpcDriverName: string | undefined;
             heightPreConfig: number | undefined;
             userBpPerPxLimit: number | undefined;
             userByteSizeLimit: number | undefined;
         }>;
-        baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            maxFeatureScreenDensity: {
+                type: string;
+                description: string;
+                defaultValue: number;
+            };
+            fetchSizeLimit: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
+            height: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
+            mouseover: {
+                type: string;
+                description: string;
+                defaultValue: string;
+                contextVariable: string[];
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         SearchBox: ({ model, showHelp, }: {
             showHelp?: boolean | undefined;
             model: {
@@ -745,15 +914,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -765,7 +931,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -799,8 +964,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -809,7 +973,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -857,7 +1021,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -937,15 +1102,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -957,7 +1119,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -991,8 +1152,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -1001,7 +1161,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1049,7 +1209,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1086,7 +1247,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reversed: boolean;
                 } | undefined;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }) => JSX.Element;
+        }) => import("react").JSX.Element;
         ZoomControls: ({ model }: {
             model: {
                 id: string;
@@ -1139,15 +1300,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -1159,7 +1317,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -1193,8 +1350,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -1203,7 +1359,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1251,7 +1407,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1331,15 +1488,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -1351,7 +1505,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -1385,8 +1538,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -1395,7 +1547,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1443,7 +1595,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1480,7 +1633,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reversed: boolean;
                 } | undefined;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }) => JSX.Element;
+        }) => import("react").JSX.Element;
         LinearGenomeView: ({ model }: {
             model: {
                 id: string;
@@ -1533,15 +1686,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -1553,7 +1703,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -1587,8 +1736,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -1597,7 +1745,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1645,7 +1793,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1725,15 +1874,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: {
-                    [key: string]: any;
+                    [key: string]: HTMLDivElement;
                 };
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
                 leftOffset: import("./LinearGenomeView").BpOffset | undefined;
                 rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
-                searchQuery: string | undefined;
-                seqDialogDisplayed: boolean;
             } & {
                 readonly width: number;
                 readonly interRegionPaddingWidth: number;
@@ -1745,7 +1891,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly assembliesInitialized: boolean;
                 readonly initialized: boolean;
                 readonly hasDisplayedRegions: boolean;
-                readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
                 readonly trackHeights: number;
@@ -1779,8 +1924,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
-                setGetSequenceDialogOpen(open: boolean): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -1789,7 +1933,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1837,7 +1981,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1874,14 +2019,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     reversed: boolean;
                 } | undefined;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }) => JSX.Element;
+        }) => import("react").JSX.Element;
     };
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
+export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BlockModel, } from './BaseLinearDisplay';
 export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
-export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
+export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
+export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
 export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
 export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';