@jbrowse/plugin-linear-genome-view 2.4.2 → 2.6.1

package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../src/LinearGenomeView/components/RefNameAutocomplete/util.ts"],"names":[],"mappings":"AAAA,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAO7D,oCAAoC;AACpC,SAAS,aAAa,CAAC,OAAiB,EAAE,WAAmB;IAC3D,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE,CACb,MAAM,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACrD,MAAM,CAAC,aAAa,CACvB,CAAA;AACH,CAAC;AAED,2EAA2E;AAC3E,4EAA4E;AAC5E,MAAM,UAAU,WAAW,CAAC,IAAc,EAAE,UAAkB;IAC5D,MAAM,QAAQ,GAAG,aAAa,CAAC,IAAI,EAAE,UAAU,CAAC,iBAAiB,EAAE,CAAC,CAAA;IACpE,OAAO;QACL,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;QACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,GAAG,GAAG;YACvB,CAAC,CAAC;gBACE;oBACE,KAAK,EAAE,aAAa;oBACpB,MAAM,EAAE,IAAI,UAAU,CAAC;wBACrB,KAAK,EAAE,8BAA8B;qBACtC,CAAC;iBACH;aACF;YACH,CAAC,CAAC,EAAE,CAAC;KACR,CAAA;AACH,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,OAAqB;IACpD,MAAM,CAAC,GAAoC,EAAE,CAAA;IAE7C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;QAC5B,MAAM,aAAa,GAAG,MAAM,CAAC,gBAAgB,EAAE,CAAA;QAC/C,IAAI,CAAC,CAAC,CAAC,aAAa,CAAC,EAAE;YACrB,CAAC,CAAC,aAAa,CAAC,GAAG,EAAE,CAAA;SACtB;QACD,CAAC,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;KAC9B;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,OAAqB;IACzD,OAAO,MAAM,CAAC,OAAO,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAClD,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,EAAE,CAC3B,OAAO,CAAC,MAAM,KAAK,CAAC;QAClB,CAAC,CAAC;YACE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;SACnB;QACH,CAAC,CAAC;YACE,+BAA+B;YAC/B,MAAM,EAAE,IAAI,UAAU,CAAC;gBACrB,aAAa;gBACb,OAAO;gBACP,KAAK,EAAE,aAAa;aACrB,CAAC;SACH,CACR,CAAA;AACH,CAAC"}

package/esm/LinearGenomeView/components/Rubberband.d.ts

@@ -4,6 +4,6 @@ type LGV = LinearGenomeViewModel;
 declare function Rubberband({ model, ControlComponent, }: {
     model: LGV;
     ControlComponent?: React.ReactElement;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof Rubberband;
 export default _default;

package/esm/LinearGenomeView/components/RubberbandSpan.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 interface Offset {
     coord: number;
     refName?: string;
@@ -10,5 +10,5 @@ export default function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSel
     numOfBpSelected?: number;
     left: number;
     width: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/esm/LinearGenomeView/components/SearchBox.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 declare function SearchBox({ model, showHelp, }: {
     showHelp?: boolean;
     model: LinearGenomeViewModel;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SearchBox;
 export default _default;

package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts

@@ -1,7 +1,10 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '../..';
-export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+export default function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }: {
     model: LinearGenomeViewModel;
-    optAssemblyName?: string;
+    assemblyName?: string;
+    searchQuery: string;
+    searchResults?: BaseResult[];
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/esm/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,92 +1,16 @@
 import React from 'react';
-import { resolveIdentifier, getRoot } from 'mobx-state-tree';
-import { getSession, getEnv } from '@jbrowse/core/util';
 import { Dialog } from '@jbrowse/core/ui';
-import { Button, DialogActions, DialogContent, Divider, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
-export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
-    var _a, _b;
-    const session = getSession(model);
-    const { pluginManager } = getEnv(session);
-    const { assemblyManager } = session;
-    let assemblyName = optAssemblyName;
-    if (model.displayedRegions.length > 0) {
-        assemblyName = (_a = model.displayedRegions[0]) === null || _a === void 0 ? void 0 : _a.assemblyName;
-    }
-    if (!assemblyName) {
-        throw new Error(`Assembly name not found`);
-    }
-    const assembly = assemblyManager.get(assemblyName);
-    if (!assembly) {
-        throw new Error(`assembly ${assemblyName} not found`);
-    }
-    if (!assembly.regions) {
-        throw new Error(`assembly ${assemblyName} regions not loaded`);
-    }
-    const assemblyRegions = assembly.regions;
-    async function handleClick(location) {
-        try {
-            const newRegion = assemblyRegions.find(region => location === region.refName);
-            if (newRegion) {
-                model.setDisplayedRegions([newRegion]);
-                // we use showAllRegions after setDisplayedRegions to make the entire
-                // region visible, xref #1703
-                model.showAllRegions();
-            }
-            else {
-                await model.navToLocString(location, assemblyName);
-            }
-        }
-        catch (e) {
-            console.warn(e);
-            session.notify(`${e}`, 'warning');
-        }
-    }
-    function getTrackName(trackId) {
-        var _a;
-        if (trackId) {
-            const schema = pluginManager.pluggableConfigSchemaType('track');
-            const configuration = resolveIdentifier(schema, getRoot(model), trackId);
-            return ((_a = configuration === null || configuration === void 0 ? void 0 : configuration.name) === null || _a === void 0 ? void 0 : _a.value) || '';
-        }
-        return '';
-    }
+import { Button, DialogActions, DialogContent, Divider, Typography, } from '@mui/material';
+import SearchResultsTable from './SearchResultsTable';
+export default function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }) {
     return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
-        React.createElement(DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (React.createElement(Typography, null,
+        React.createElement(DialogContent, null, !(searchResults === null || searchResults === void 0 ? void 0 : searchResults.length) ? (React.createElement(Typography, null,
             "No results found for ",
-            React.createElement("b", null, model.searchQuery))) : (React.createElement(React.Fragment, null,
+            React.createElement("b", null, searchQuery))) : (React.createElement(React.Fragment, null,
             React.createElement(Typography, null,
                 "Showing results for ",
-                React.createElement("b", null, model.searchQuery)),
-            React.createElement(TableContainer, { component: Paper },
-                React.createElement(Table, null,
-                    React.createElement(TableHead, null,
-                        React.createElement(TableRow, null,
-                            React.createElement(TableCell, null, "Name"),
-                            React.createElement(TableCell, { align: "right" }, "Location"),
-                            React.createElement(TableCell, { align: "right" }, "Track"),
-                            React.createElement(TableCell, { align: "right" }))),
-                    React.createElement(TableBody, null, model.searchResults.map(result => (React.createElement(TableRow, { key: `${result.getId()}` },
-                        React.createElement(TableCell, { component: "th", scope: "row" }, result.getLabel()),
-                        React.createElement(TableCell, { align: "right" }, result.getLocation()),
-                        React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
-                        React.createElement(TableCell, { align: "right" },
-                            React.createElement(Button, { onClick: async () => {
-                                    try {
-                                        const location = result.getLocation();
-                                        if (location) {
-                                            await handleClick(location);
-                                            const resultTrackId = result.getTrackId();
-                                            if (resultTrackId) {
-                                                model.showTrack(resultTrackId);
-                                            }
-                                        }
-                                    }
-                                    catch (e) {
-                                        console.error(e);
-                                        session.notify(`${e}`, 'error');
-                                    }
-                                    handleClose();
-                                }, color: "primary", variant: "contained" }, "Go"))))))))))),
+                React.createElement("b", null, searchQuery)),
+            React.createElement(SearchResultsTable, { model: model, handleClose: handleClose, assemblyName: assemblyName, searchResults: searchResults })))),
         React.createElement(Divider, null),
         React.createElement(DialogActions, null,
             React.createElement(Button, { onClick: () => handleClose(), color: "primary" }, "Cancel"))));

package/esm/LinearGenomeView/components/SearchResultsDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SearchResultsTable.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+import { LinearGenomeViewModel } from '../..';
+export default function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }: {
+    searchResults: BaseResult[];
+    assemblyName?: string;
+    model: LinearGenomeViewModel;
+    handleClose: () => void;
+}): React.JSX.Element;

package/esm/LinearGenomeView/components/SearchResultsTable.js

@@ -0,0 +1,77 @@
+import React from 'react';
+import { Button, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, } from '@mui/material';
+import { getRoot, resolveIdentifier } from 'mobx-state-tree';
+import { getEnv, getSession } from '@jbrowse/core/util';
+export default function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }) {
+    var _a;
+    const session = getSession(model);
+    const { pluginManager } = getEnv(session);
+    const { assemblyManager } = session;
+    const assemblyName = optAssemblyName || ((_a = model.displayedRegions[0]) === null || _a === void 0 ? void 0 : _a.assemblyName);
+    const assembly = assemblyManager.get(assemblyName);
+    if (!assembly) {
+        throw new Error(`assembly ${assemblyName} not found`);
+    }
+    if (!assembly.regions) {
+        throw new Error(`assembly ${assemblyName} regions not loaded`);
+    }
+    function getTrackName(trackId) {
+        var _a;
+        if (trackId) {
+            const schema = pluginManager.pluggableConfigSchemaType('track');
+            const configuration = resolveIdentifier(schema, getRoot(model), trackId);
+            return ((_a = configuration === null || configuration === void 0 ? void 0 : configuration.name) === null || _a === void 0 ? void 0 : _a.value) || '';
+        }
+        return '';
+    }
+    async function handleClick(location) {
+        var _a;
+        try {
+            const newRegion = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.find(region => location === region.refName);
+            if (newRegion) {
+                model.setDisplayedRegions([newRegion]);
+                // we use showAllRegions after setDisplayedRegions to make the entire
+                // region visible, xref #1703
+                model.showAllRegions();
+            }
+            else {
+                await model.navToLocString(location, assemblyName);
+            }
+        }
+        catch (e) {
+            console.warn(e);
+            session.notify(`${e}`, 'warning');
+        }
+    }
+    return (React.createElement(TableContainer, { component: Paper },
+        React.createElement(Table, null,
+            React.createElement(TableHead, null,
+                React.createElement(TableRow, null,
+                    React.createElement(TableCell, null, "Name"),
+                    React.createElement(TableCell, { align: "right" }, "Location"),
+                    React.createElement(TableCell, { align: "right" }, "Track"),
+                    React.createElement(TableCell, { align: "right" }))),
+            React.createElement(TableBody, null, searchResults.map(result => (React.createElement(TableRow, { key: `${result.getId()}` },
+                React.createElement(TableCell, { component: "th", scope: "row" }, result.getLabel()),
+                React.createElement(TableCell, { align: "right" }, result.getLocation()),
+                React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
+                React.createElement(TableCell, { align: "right" },
+                    React.createElement(Button, { onClick: async () => {
+                            try {
+                                const location = result.getLocation();
+                                if (location) {
+                                    await handleClick(location);
+                                    const resultTrackId = result.getTrackId();
+                                    if (resultTrackId) {
+                                        model.showTrack(resultTrackId);
+                                    }
+                                }
+                            }
+                            catch (e) {
+                                console.error(e);
+                                session.notify(`${e}`, 'error');
+                            }
+                            handleClose();
+                        }, color: "primary", variant: "contained" }, "Go")))))))));
+}
+//# sourceMappingURL=SearchResultsTable.js.map

package/esm/LinearGenomeView/components/SearchResultsTable.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SearchResultsTable.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsTable.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,KAAK,EACL,KAAK,EACL,SAAS,EACT,SAAS,EACT,cAAc,EACd,SAAS,EACT,QAAQ,GACT,MAAM,eAAe,CAAA;AAEtB,OAAO,EAAE,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAA;AAC5D,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAKvD,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,aAAa,EACb,YAAY,EAAE,eAAe,EAC7B,KAAK,EACL,WAAW,GAMZ;;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,YAAY,GAChB,eAAe,KAAI,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA,CAAA;IAE5D,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,MAAM,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC/D,MAAM,aAAa,GAAG,iBAAiB,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,CAAC,EAAE,OAAO,CAAC,CAAA;YACxE,OAAO,CAAA,MAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,IAAI,0CAAE,KAAK,KAAI,EAAE,CAAA;SACxC;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,KAAK,UAAU,WAAW,CAAC,QAAgB;;QACzC,IAAI;YACF,MAAM,SAAS,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,0CAAE,IAAI,CACvC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aACnD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,oBAAC,cAAc,IAAC,SAAS,EAAE,KAAK;QAC9B,oBAAC,KAAK;YACJ,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;oBAC7C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;oBAC1C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;YACZ,oBAAC,SAAS,QACP,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAC3B,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;gBAChC,oBAAC,SAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;gBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IAAE,MAAM,CAAC,WAAW,EAAE,CAAa;gBAC3D,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;gBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO;oBACtB,oBAAC,MAAM,IACL,OAAO,EAAE,KAAK,IAAI,EAAE;4BAClB,IAAI;gCACF,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;gCACrC,IAAI,QAAQ,EAAE;oCACZ,MAAM,WAAW,CAAC,QAAQ,CAAC,CAAA;oCAC3B,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;oCACzC,IAAI,aAAa,EAAE;wCACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;qCAC/B;iCACF;6BACF;4BAAC,OAAO,CAAC,EAAE;gCACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gCAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;6BAChC;4BACD,WAAW,EAAE,CAAA;wBACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,CAAC,CACQ,CACN,CACO,CAClB,CAAA;AACH,CAAC"}

package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts

@@ -1,10 +1,10 @@
-/// <reference types="react" />
+import React from 'react';
 declare function SequenceDialog({ model, handleClose, }: {
     model: {
         assemblyNames: string[];
         toggleTrack(trackId: string): void;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SequenceDialog;
 export default _default;

package/esm/LinearGenomeView/components/TrackContainer.d.ts

@@ -1,10 +1,9 @@
-/// <reference types="react" />
+import React from 'react';
 import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function TrackContainer({ model, track, }: {
+declare const _default: ({ model, track, }: {
     model: LGV;
     track: BaseTrackModel;
-}): JSX.Element;
-declare const _default: typeof TrackContainer;
+}) => React.JSX.Element;
 export default _default;

package/esm/LinearGenomeView/components/TrackContainer.js

@@ -1,13 +1,13 @@
-import React, { useEffect, useRef } from 'react';
+import React, { useRef } from 'react';
 import { Paper } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { isAlive } from 'mobx-state-tree';
 import { ErrorBoundary } from 'react-error-boundary';
-import { getConf } from '@jbrowse/core/configuration';
 import { ResizeHandle, ErrorMessage } from '@jbrowse/core/ui';
 import { useDebouncedCallback } from '@jbrowse/core/util';
-import TrackLabel from './TrackLabel';
+import TrackLabelContainer from './TrackLabelContainer';
+import TrackRenderingContainer from './TrackRenderingContainer';
 const useStyles = makeStyles()({
     root: {
         marginTop: 2,
@@ -26,82 +26,32 @@ const useStyles = makeStyles()({
         width: '100%',
         zIndex: 3,
     },
-    trackLabel: {
-        zIndex: 3,
-    },
-    // aligns with block boundaries. check for example the breakpoint split view
-    // demo to see if features align if wanting to change things
-    renderingComponentContainer: {
-        position: 'absolute',
-        // -1 offset because of the 1px border of the Paper
-        left: -1,
-        height: '100%',
-        width: '100%',
-    },
-    trackLabelOffset: {
-        position: 'relative',
-        display: 'inline-block',
-    },
-    trackLabelOverlap: {
-        position: 'absolute',
-    },
-    trackRenderingContainer: {
-        overflowY: 'auto',
-        overflowX: 'hidden',
-        whiteSpace: 'nowrap',
-        position: 'relative',
-        background: 'none',
-        zIndex: 2,
-    },
 });
-const TrackContainerLabel = observer(({ model, view }) => {
-    const { classes, cx } = useStyles();
-    const display = model.displays[0];
-    const { trackLabel, trackLabelOverlap, trackLabelOffset } = classes;
-    const labelStyle = view.trackLabels !== 'overlapping' || display.prefersOffset
-        ? trackLabelOffset
-        : trackLabelOverlap;
-    return view.trackLabels !== 'hidden' ? (React.createElement(TrackLabel, { track: model, className: cx(trackLabel, labelStyle) })) : null;
-});
-function TrackContainer({ model, track, }) {
+export default observer(function TrackContainer({ model, track, }) {
     const { classes } = useStyles();
     const display = track.displays[0];
-    const { horizontalScroll, draggingTrackId, moveTrack } = model;
-    const { height, RenderingComponent, DisplayBlurb } = display;
-    const trackId = getConf(track, 'trackId');
-    const ref = useRef(null);
+    const { draggingTrackId } = model;
+    const ref2 = useRef(null);
     const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
-    const minimized = track.minimized;
     const debouncedOnDragEnter = useDebouncedCallback(() => {
         if (isAlive(display) && dimmed) {
-            moveTrack(draggingTrackId, track.id);
+            model.moveTrack(draggingTrackId, track.id);
         }
     }, 100);
-    useEffect(() => {
-        if (ref.current) {
-            model.trackRefs[trackId] = ref.current;
-        }
-        return () => {
-            delete model.trackRefs[trackId];
-        };
-    }, [model.trackRefs, trackId]);
-    return (React.createElement(Paper, { className: classes.root, variant: "outlined" },
-        React.createElement(TrackContainerLabel, { model: track, view: model }),
-        React.createElement(ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => React.createElement(ErrorMessage, { error: error }) },
-            React.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (React.createElement(React.Fragment, null,
-                React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
-                    React.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
-                DisplayBlurb ? (React.createElement("div", { style: {
-                        position: 'absolute',
-                        left: 0,
-                        top: display.height - 20,
-                    } },
-                    React.createElement(DisplayBlurb, { model: display }))) : null)) : null)),
+    return (React.createElement(Paper, { ref: ref2, className: classes.root, variant: "outlined", onClick: event => {
+            var _a;
+            if (event.detail === 2 && !track.displays[0].featureIdUnderMouse) {
+                const left = ((_a = ref2.current) === null || _a === void 0 ? void 0 : _a.getBoundingClientRect().left) || 0;
+                model.zoomTo(model.bpPerPx / 2, event.clientX - left, true);
+            }
+        } },
+        React.createElement(TrackLabelContainer, { track: track, view: model }),
+        React.createElement(ErrorBoundary, { FallbackComponent: e => React.createElement(ErrorMessage, { error: e.error }) },
+            React.createElement(TrackRenderingContainer, { model: model, track: track, onDragEnter: debouncedOnDragEnter })),
         React.createElement("div", { className: classes.overlay, style: {
                 height: display.height,
                 background: dimmed ? 'rgba(0, 0, 0, 0.4)' : undefined,
             }, onDragEnter: debouncedOnDragEnter }),
         React.createElement(ResizeHandle, { onDrag: display.resizeHeight, className: classes.resizeHandle })));
-}
-export default observer(TrackContainer);
+});
 //# sourceMappingURL=TrackContainer.js.map

package/esm/LinearGenomeView/components/TrackContainer.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackLabel.js

@@ -6,8 +6,7 @@ import { getConf } from '@jbrowse/core/configuration';
 import { getSession, getContainingView } from '@jbrowse/core/util';
 import { getTrackName } from '@jbrowse/core/util/tracks';
 import { SanitizedHTML } from '@jbrowse/core/ui';
-import CascadingMenu from '@jbrowse/core/ui/CascadingMenu';
-import { bindTrigger, bindPopover, usePopupState, } from 'material-ui-popup-state/hooks';
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
 // icons
 import MoreVertIcon from '@mui/icons-material/MoreVert';
 import DragIcon from '@mui/icons-material/DragIndicator';
@@ -51,10 +50,6 @@ const TrackLabel = React.forwardRef(function ({ track, className }, ref) {
     const minimized = track.minimized;
     const trackId = getConf(track, 'trackId');
     const trackName = getTrackName(trackConf, session);
-    const popupState = usePopupState({
-        popupId: 'trackLabelMenu',
-        variant: 'popover',
-    });
     const items = [
         {
             label: minimized ? 'Restore track' : 'Minimize track',
@@ -77,10 +72,11 @@ const TrackLabel = React.forwardRef(function ({ track, className }, ref) {
         React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track" },
             React.createElement(CloseIcon, { fontSize: "small" })),
         React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName },
-            React.createElement(SanitizedHTML, { html: `${trackName}${minimized ? ' (minimized)' : ''}` })),
-        React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, "data-testid": "track_menu_icon", disabled: items.length === 0 },
-            React.createElement(MoreVertIcon, { fontSize: "small" })),
-        React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
+            React.createElement(SanitizedHTML, { html: [trackName, minimized ? '(minimized)' : '']
+                    .filter(f => !!f)
+                    .join(' ') })),
+        React.createElement(CascadingMenuButton, { menuItems: items, "data-testid": "track_menu_icon" },
+            React.createElement(MoreVertIcon, { fontSize: "small" }))));
 });
 export default observer(TrackLabel);
 //# sourceMappingURL=TrackLabel.js.map

package/esm/LinearGenomeView/components/TrackLabel.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+declare const TrackLabelContainer: ({ track, view, }: {
+    track: BaseTrackModel;
+    view: LGV;
+}) => React.JSX.Element | null;
+export default TrackLabelContainer;

package/esm/LinearGenomeView/components/TrackLabelContainer.js

@@ -0,0 +1,27 @@
+import React from 'react';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import TrackLabel from './TrackLabel';
+const useStyles = makeStyles()({
+    trackLabel: {
+        zIndex: 3,
+    },
+    trackLabelOffset: {
+        position: 'relative',
+        display: 'inline-block',
+    },
+    trackLabelOverlap: {
+        position: 'absolute',
+    },
+});
+const TrackLabelContainer = observer(function ({ track, view, }) {
+    const { classes, cx } = useStyles();
+    const display = track.displays[0];
+    const { trackLabel, trackLabelOverlap, trackLabelOffset } = classes;
+    const labelStyle = view.trackLabels !== 'overlapping' || display.prefersOffset
+        ? trackLabelOffset
+        : trackLabelOverlap;
+    return view.trackLabels !== 'hidden' ? (React.createElement(TrackLabel, { track: track, className: cx(trackLabel, labelStyle) })) : null;
+});
+export default TrackLabelContainer;
+//# sourceMappingURL=TrackLabelContainer.js.map

package/esm/LinearGenomeView/components/TrackLabelContainer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackLabelContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabelContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAOrC,OAAO,UAAU,MAAM,cAAc,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,KAAK,EACL,IAAI,GAIL;IACC,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA"}

package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts

@@ -0,0 +1,10 @@
+import React from 'react';
+import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+declare const _default: ({ model, track, onDragEnter, }: {
+    model: LGV;
+    track: BaseTrackModel;
+    onDragEnter: () => void;
+}) => React.JSX.Element;
+export default _default;

package/esm/LinearGenomeView/components/TrackRenderingContainer.js

@@ -0,0 +1,49 @@
+import React, { useEffect, useRef } from 'react';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { getConf } from '@jbrowse/core/configuration';
+const useStyles = makeStyles()({
+    // aligns with block boundaries. check for example the breakpoint split view
+    // demo to see if features align if wanting to change things
+    renderingComponentContainer: {
+        position: 'absolute',
+        // -1 offset because of the 1px border of the Paper
+        left: -1,
+        height: '100%',
+        width: '100%',
+    },
+    trackRenderingContainer: {
+        overflowY: 'auto',
+        overflowX: 'hidden',
+        whiteSpace: 'nowrap',
+        position: 'relative',
+        background: 'none',
+        zIndex: 2,
+    },
+});
+export default observer(function TrackRenderingContainer({ model, track, onDragEnter, }) {
+    const { classes } = useStyles();
+    const display = track.displays[0];
+    const { height, RenderingComponent, DisplayBlurb } = display;
+    const trackId = getConf(track, 'trackId');
+    const ref = useRef(null);
+    const minimized = track.minimized;
+    useEffect(() => {
+        if (ref.current) {
+            model.trackRefs[trackId] = ref.current;
+        }
+        return () => {
+            delete model.trackRefs[trackId];
+        };
+    }, [model.trackRefs, trackId]);
+    return (React.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: onDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (React.createElement(React.Fragment, null,
+        React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
+            React.createElement(RenderingComponent, { model: display, onHorizontalScroll: model.horizontalScroll })),
+        DisplayBlurb ? (React.createElement("div", { style: {
+                position: 'absolute',
+                left: 0,
+                top: display.height - 20,
+            } },
+            React.createElement(DisplayBlurb, { model: display }))) : null)) : null));
+});
+//# sourceMappingURL=TrackRenderingContainer.js.map

package/esm/LinearGenomeView/components/TrackRenderingContainer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackRenderingContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackRenderingContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAKrD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IAED,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,eAAe,QAAQ,CAAC,SAAS,uBAAuB,CAAC,EACvD,KAAK,EACL,KAAK,EACL,WAAW,GAKZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IAEjC,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,6BACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAC1C,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,CAAC,SAAS,CAAC,EAClE,WAAW,EAAE,WAAW,iBACX,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE,IAE5D,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ;QACE,6BACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;YAEpD,oBAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,KAAK,CAAC,gBAAgB,GAC1C,CACE;QAEL,YAAY,CAAC,CAAC,CAAC,CACd,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,IAAI,EAAE,CAAC;gBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;aACzB;YAED,oBAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TracksContainer.d.ts

@@ -4,5 +4,5 @@ type LGV = LinearGenomeViewModel;
 declare const _default: ({ children, model, }: {
     children: React.ReactNode;
     model: LGV;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;