@jbrowse/plugin-linear-genome-view 2.4.2 → 2.6.1

package/dist/LinearGenomeView/model.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts

@@ -1,6 +1,6 @@
-/// <reference types="react" />
+import React from 'react';
 export default function SVGBackground({ width, height, shift, }: {
     width: number;
     height: number;
     shift: number;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts

@@ -1,10 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
-type LGV = LinearGenomeViewModel;
 export default function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }: {
-    model: LGV;
+    model: LinearGenomeViewModel;
     rulerHeight: number;
     fontSize: number;
     cytobandHeight: number;
-}): JSX.Element;
-export {};
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js

@@ -25,15 +25,20 @@ function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }) {
         minimumBlockWidth: model.minimumBlockWidth,
     });
     const visibleRegions = model.dynamicBlocks.contentBlocks;
+    if (!visibleRegions.length) {
+        return null;
+    }
     overview.setVolatileWidth(width);
     overview.showAllRegions();
     const block = overview.dynamicBlocks.contentBlocks[0];
-    const first = visibleRegions[0];
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const first = visibleRegions.at(0);
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const last = visibleRegions.at(-1);
     const firstOverviewPx = overview.bpToPx({
         ...first,
         coord: first.reversed ? first.end : first.start,
     }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
     const lastOverviewPx = overview.bpToPx({
         ...last,
         coord: last.reversed ? last.start : last.end,

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map

@@ -1 +1 @@
-{"version":3,"file":"SVGHeader.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGHeader.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,6CAA+C;AAC/C,yFAA2D;AAC3D,4CAAwC;AAExC,SAAS;AACT,0BAAkE;AAClE,wEAA+C;AAC/C,qEAAwD;AACxD,0DAAiC;AACjC,gEAAuC;AAIvC,SAAwB,SAAS,CAAC,EAChC,KAAK,EACL,QAAQ,EACR,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IAExB,MAAM,QAAQ,GAAG,yBAAU,CAAC,MAAM,CAAC;QACjC,gBAAgB,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;QAC9D,uBAAuB,EAAE,CAAC;QAC1B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB;KAC3C,CAAC,CAAA;IACF,MAAM,cAAc,GAAG,KAAK,CAAC,aAAa,CAAC,aAAa,CAAA;IAExD,QAAQ,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAChC,QAAQ,CAAC,cAAc,EAAE,CAAA;IACzB,MAAM,KAAK,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IAErD,MAAM,KAAK,GAAG,cAAc,CAAC,CAAC,CAAC,CAAA;IAC/B,MAAM,eAAe,GACnB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,IAAI,GAAG,cAAc,CAAC,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACtD,MAAM,cAAc,GAClB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAA;IACT,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,OAAO,CACL,qCAAG,EAAE,EAAC,QAAQ;QACZ,wCACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,QAAQ,EACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,IAE/B,YAAY,CACR;QAEN,aAAa,CAAC,CAAC,CAAC,CACf,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG;YACzC,8BAAC,mBAAS,IAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI;YACnE,wCACE,MAAM,EAAC,KAAK,EACZ,IAAI,EAAC,kBAAkB,EACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,eAAe,EAAE,GAAG,CAAC,EACtD,MAAM,EAAE,0BAAsB,GAAG,CAAC,EAClC,CAAC,EAAE,eAAe,EAClB,CAAC,EAAE,GAAG,GACN;YACF,qCAAG,SAAS,EAAE,eAAe,0BAAsB,GAAG;gBACpD,8BAAC,0BAAO,IAAC,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,GAAI,CAC7D,CACF,CACL,CAAC,CAAC,CAAC,IAAI;QAER,qCAAG,SAAS,EAAE,eAAe,QAAQ,GAAG,CAAC,GAAG;YAC1C,8BAAC,qBAAW,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC/C;QACJ,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG,CAAC,GAAG;YAC7C,8BAAC,kBAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC5C,CACF,CACL,CAAA;AACH,CAAC;AA9ED,4BA8EC"}
+{"version":3,"file":"SVGHeader.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGHeader.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,6CAA+C;AAC/C,yFAA2D;AAC3D,4CAAwC;AAExC,SAAS;AACT,0BAAkE;AAClE,wEAA+C;AAC/C,qEAAwD;AACxD,0DAAiC;AACjC,gEAAuC;AAEvC,SAAwB,SAAS,CAAC,EAChC,KAAK,EACL,QAAQ,EACR,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IAExB,MAAM,QAAQ,GAAG,yBAAU,CAAC,MAAM,CAAC;QACjC,gBAAgB,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;QAC9D,uBAAuB,EAAE,CAAC;QAC1B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB;KAC3C,CAAC,CAAA;IACF,MAAM,cAAc,GAAG,KAAK,CAAC,aAAa,CAAC,aAAa,CAAA;IACxD,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE;QAC1B,OAAO,IAAI,CAAA;KACZ;IAED,QAAQ,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAChC,QAAQ,CAAC,cAAc,EAAE,CAAA;IACzB,MAAM,KAAK,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrD,oEAAoE;IACpE,MAAM,KAAK,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC,CAAE,CAAA;IACnC,oEAAoE;IACpE,MAAM,IAAI,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;IACnC,MAAM,eAAe,GACnB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,cAAc,GAClB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAA;IACT,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,OAAO,CACL,qCAAG,EAAE,EAAC,QAAQ;QACZ,wCACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,QAAQ,EACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,IAE/B,YAAY,CACR;QAEN,aAAa,CAAC,CAAC,CAAC,CACf,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG;YACzC,8BAAC,mBAAS,IAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI;YACnE,wCACE,MAAM,EAAC,KAAK,EACZ,IAAI,EAAC,kBAAkB,EACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,eAAe,EAAE,GAAG,CAAC,EACtD,MAAM,EAAE,0BAAsB,GAAG,CAAC,EAClC,CAAC,EAAE,eAAe,EAClB,CAAC,EAAE,GAAG,GACN;YACF,qCAAG,SAAS,EAAE,eAAe,0BAAsB,GAAG;gBACpD,8BAAC,0BAAO,IAAC,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,GAAI,CAC7D,CACF,CACL,CAAC,CAAC,CAAC,IAAI;QAER,qCAAG,SAAS,EAAE,eAAe,QAAQ,GAAG,CAAC,GAAG;YAC1C,8BAAC,qBAAW,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC/C;QACJ,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG,CAAC,GAAG;YAC7C,8BAAC,kBAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC5C,CACF,CACL,CAAA;AACH,CAAC;AAlFD,4BAkFC"}

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js

@@ -33,7 +33,7 @@ async function renderToSvg(model, opts) {
     const height = totalHeight(tracks, textHeight, trackLabels) + offset + 100;
     const displayResults = await Promise.all(tracks.map(async (track) => {
         const display = track.displays[0];
-        await (0, mobx_1.when)(() => (display.ready !== undefined ? display.ready : true));
+        await (0, mobx_1.when)(() => !display.renderProps().notReady);
         return { track, result: await display.renderSvg({ ...opts, theme }) };
     }));
     const trackLabelMaxLen = (0, util_1.max)(tracks.map(t => (0, util_1.measureText)((0, tracks_1.getTrackName)(t.configuration, session), fontSize)), 0) + 40;

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map

@@ -1 +1 @@
-{"version":3,"file":"SVGLinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAAuD;AACvD,+BAA2B;AAC3B,6CAAsE;AACtE,4CAA6C;AAC7C,yCAAqD;AAIrD,oEAA2C;AAC3C,4DAAmC;AACnC,4DAAmC;AAEnC,sDAAwD;AAWxD,SAAgB,WAAW,CACzB,MAAe,EACf,UAAkB,EAClB,WAAmB;IAEnB,OAAO,IAAA,UAAG,EACR,MAAM,CAAC,GAAG,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM;QACpB,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAC5D,CACF,CAAA;AACH,CAAC;AAZD,kCAYC;AAED,oBAAoB;AACb,KAAK,UAAU,WAAW,CAAC,KAAU,EAAE,IAAsB;;IAClE,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,KAAK,CAAC,WAAW,CAAC,CAAA;IACnC,MAAM,EACJ,UAAU,GAAG,EAAE,EACf,YAAY,GAAG,EAAE,EACjB,WAAW,GAAG,EAAE,EAChB,QAAQ,GAAG,EAAE,EACb,cAAc,GAAG,GAAG,EACpB,WAAW,GAAG,QAAQ,EACtB,SAAS,GAAG,SAAS,EACrB,OAAO,GAAG,CAAC,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,8DAAG,QAAQ,CAAI,GAC5C,GAAG,IAAI,CAAA;IACR,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,KAAK,GAAG,MAAA,OAAO,CAAC,SAAS,wDAAK,SAAS,CAAC,CAAA;IAC9C,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC9C,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,MAAM,MAAM,GAAG,YAAY,GAAG,WAAW,GAAG,CAAC,GAAG,EAAE,CAAA;IAClD,MAAM,MAAM,GAAG,WAAW,CAAC,MAAM,EAAE,UAAU,EAAE,WAAW,CAAC,GAAG,MAAM,GAAG,GAAG,CAAA;IAC1E,MAAM,cAAc,GAAG,MAAM,OAAO,CAAC,GAAG,CACtC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;QACvB,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACjC,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,OAAO,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAA;QACtE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,OAAO,CAAC,SAAS,CAAC,EAAE,GAAG,IAAI,EAAE,KAAK,EAAE,CAAC,EAAE,CAAA;IACvE,CAAC,CAAC,CACH,CAAA;IACD,MAAM,gBAAgB,GACpB,IAAA,UAAG,EACD,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACb,IAAA,kBAAW,EAAC,IAAA,qBAAY,EAAC,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,QAAQ,CAAC,CAC9D,EACD,CAAC,CACF,GAAG,EAAE,CAAA;IACR,MAAM,gBAAgB,GAAG,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAA;IACtE,MAAM,CAAC,GAAG,KAAK,GAAG,gBAAgB,CAAA;IAElC,wDAAwD;IACxD,OAAO,IAAA,6BAAoB,EACzB,8BAAC,wBAAa,IAAC,KAAK,EAAE,IAAA,uBAAkB,EAAC,KAAK,CAAC;QAC7C,8BAAC,OAAO;YACN,uCACE,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,MAAM,EACd,KAAK,EAAC,4BAA4B,EAClC,UAAU,EAAC,8BAA8B,EACzC,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE,MAAM,CAAC,CAAC,QAAQ,EAAE;gBAEjD,8BAAC,uBAAa,IAAC,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAI;gBACzD,qCAAG,SAAS,EAAE,aAAa,KAAK,KAAK;oBACnC,qCAAG,SAAS,EAAE,aAAa,gBAAgB,GAAG;wBAC5C,8BAAC,mBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,GAC9B,CACA;oBACJ,8BAAC,mBAAS,IACR,UAAU,EAAE,UAAU,EACtB,QAAQ,EAAE,QAAQ,EAClB,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE,cAAc,EAC9B,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,WAAW,EACxB,gBAAgB,EAAE,gBAAgB,GAClC,CACA,CACA,CACE,CACI,CACjB,CAAA;AACH,CAAC;AAvED,kCAuEC;AAED,uCAAgD;AAAvC,qHAAA,OAAO,OAAY;AAC5B,yCAAkD;AAAzC,uHAAA,OAAO,OAAa"}
+{"version":3,"file":"SVGLinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAAuD;AACvD,+BAA2B;AAC3B,6CAAsE;AACtE,4CAA6C;AAC7C,yCAAqD;AAIrD,oEAA2C;AAC3C,4DAAmC;AACnC,4DAAmC;AAEnC,sDAAwD;AAWxD,SAAgB,WAAW,CACzB,MAAe,EACf,UAAkB,EAClB,WAAmB;IAEnB,OAAO,IAAA,UAAG,EACR,MAAM,CAAC,GAAG,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM;QACpB,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAC5D,CACF,CAAA;AACH,CAAC;AAZD,kCAYC;AAED,oBAAoB;AACb,KAAK,UAAU,WAAW,CAAC,KAAU,EAAE,IAAsB;;IAClE,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,KAAK,CAAC,WAAW,CAAC,CAAA;IACnC,MAAM,EACJ,UAAU,GAAG,EAAE,EACf,YAAY,GAAG,EAAE,EACjB,WAAW,GAAG,EAAE,EAChB,QAAQ,GAAG,EAAE,EACb,cAAc,GAAG,GAAG,EACpB,WAAW,GAAG,QAAQ,EACtB,SAAS,GAAG,SAAS,EACrB,OAAO,GAAG,CAAC,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,8DAAG,QAAQ,CAAI,GAC5C,GAAG,IAAI,CAAA;IACR,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,KAAK,GAAG,MAAA,OAAO,CAAC,SAAS,wDAAK,SAAS,CAAC,CAAA;IAC9C,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC9C,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,MAAM,MAAM,GAAG,YAAY,GAAG,WAAW,GAAG,CAAC,GAAG,EAAE,CAAA;IAClD,MAAM,MAAM,GAAG,WAAW,CAAC,MAAM,EAAE,UAAU,EAAE,WAAW,CAAC,GAAG,MAAM,GAAG,GAAG,CAAA;IAC1E,MAAM,cAAc,GAAG,MAAM,OAAO,CAAC,GAAG,CACtC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;QACvB,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACjC,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,CAAA;QACjD,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,OAAO,CAAC,SAAS,CAAC,EAAE,GAAG,IAAI,EAAE,KAAK,EAAE,CAAC,EAAE,CAAA;IACvE,CAAC,CAAC,CACH,CAAA;IACD,MAAM,gBAAgB,GACpB,IAAA,UAAG,EACD,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACb,IAAA,kBAAW,EAAC,IAAA,qBAAY,EAAC,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,QAAQ,CAAC,CAC9D,EACD,CAAC,CACF,GAAG,EAAE,CAAA;IACR,MAAM,gBAAgB,GAAG,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAA;IACtE,MAAM,CAAC,GAAG,KAAK,GAAG,gBAAgB,CAAA;IAElC,wDAAwD;IACxD,OAAO,IAAA,6BAAoB,EACzB,8BAAC,wBAAa,IAAC,KAAK,EAAE,IAAA,uBAAkB,EAAC,KAAK,CAAC;QAC7C,8BAAC,OAAO;YACN,uCACE,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,MAAM,EACd,KAAK,EAAC,4BAA4B,EAClC,UAAU,EAAC,8BAA8B,EACzC,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE,MAAM,CAAC,CAAC,QAAQ,EAAE;gBAEjD,8BAAC,uBAAa,IAAC,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAI;gBACzD,qCAAG,SAAS,EAAE,aAAa,KAAK,KAAK;oBACnC,qCAAG,SAAS,EAAE,aAAa,gBAAgB,GAAG;wBAC5C,8BAAC,mBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,GAC9B,CACA;oBACJ,8BAAC,mBAAS,IACR,UAAU,EAAE,UAAU,EACtB,QAAQ,EAAE,QAAQ,EAClB,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE,cAAc,EAC9B,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,WAAW,EACxB,gBAAgB,EAAE,gBAAgB,GAClC,CACA,CACA,CACE,CACI,CACjB,CAAA;AACH,CAAC;AAvED,kCAuEC;AAED,uCAAgD;AAAvC,qHAAA,OAAO,OAAY;AAC5B,yCAAkD;AAAzC,uHAAA,OAAO,OAAa"}

package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRegionSeparators({ model, height, }: {
     height: number;
     model: LGV;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRuler({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGScalebar({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts

@@ -1,8 +1,8 @@
-/// <reference types="react" />
+import React from 'react';
 export default function SVGTrackLabel({ trackLabels, trackName, fontSize, trackLabelOffset, x, }: {
     trackName: string;
     trackLabels: string;
     fontSize: number;
     trackLabelOffset: number;
     x: number;
-}): JSX.Element | null;
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
@@ -19,5 +19,5 @@ export default function SVGTracks({ displayResults, model, offset, textHeight, f
     fontSize: number;
     trackLabels?: string;
     trackLabelOffset?: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/util.d.ts

@@ -1,3 +1,4 @@
+import { AssemblyManager, ParsedLocString } from '@jbrowse/core/util';
 /**
  * Given a scale ( bp/px ) and minimum distances (px) between major and minor
  * gridlines, return an object like `{ majorPitch: bp, minorPitch: bp }` giving
@@ -12,3 +13,31 @@ export declare function makeTicks(start: number, end: number, bpPerPx: number, e
     base: number;
     index: number;
 }[];
+/**
+ * Generate location objects for a set of parsed locstrings, which includes
+ * translating the refNames to assembly-canonical refNames and adding the
+ * 'parentRegion'
+ *
+ * Used by navToLocations and navToLocString
+ */
+export declare function generateLocations(regions: ParsedLocString[] | undefined, assemblyManager: AssemblyManager, assemblyName?: string): Promise<{
+    assemblyName: string;
+    parentRegion: import("@jbrowse/core/assemblyManager/assembly").BasicRegion;
+    end?: number | undefined;
+    reversed?: boolean | undefined;
+    start?: number | undefined;
+    refName: string;
+}[]>;
+/**
+ * Parses locString or space separated set of locStrings into location objects
+ * Example inputs:
+ * "chr1"
+ * "chr1:1-100"
+ * "chr1:1..100"
+ * "chr1 chr2"
+ * "chr1:1-100 chr2:1-100"
+ * "chr1 100 200" equivalent to "chr1:1-100"
+ *
+ * Used by navToLocString
+ */
+export declare function parseLocStrings(input: string, assemblyName: string, isValidRefName: (str: string, assemblyName: string) => boolean): ParsedLocString[];

package/dist/LinearGenomeView/util.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.makeTicks = exports.chooseGridPitch = void 0;
+exports.parseLocStrings = exports.generateLocations = exports.makeTicks = exports.chooseGridPitch = void 0;
+const util_1 = require("@jbrowse/core/util");
 /**
  * Given a scale ( bp/px ) and minimum distances (px) between major and minor
  * gridlines, return an object like `{ majorPitch: bp, minorPitch: bp }` giving
@@ -64,4 +65,81 @@ function makeTicks(start, end, bpPerPx, emitMajor = true, emitMinor = true) {
     return ticks;
 }
 exports.makeTicks = makeTicks;
+/**
+ * Generate location objects for a set of parsed locstrings, which includes
+ * translating the refNames to assembly-canonical refNames and adding the
+ * 'parentRegion'
+ *
+ * Used by navToLocations and navToLocString
+ */
+async function generateLocations(regions = [], assemblyManager, assemblyName) {
+    return Promise.all(regions.map(async (region) => {
+        const asmName = region.assemblyName || assemblyName;
+        if (!asmName) {
+            throw new Error('no assembly provided');
+        }
+        const asm = await assemblyManager.waitForAssembly(asmName);
+        const { refName } = region;
+        if (!asm) {
+            throw new Error(`assembly ${asmName} not found`);
+        }
+        const { regions } = asm;
+        if (!regions) {
+            throw new Error(`regions not loaded yet for ${asmName}`);
+        }
+        const canonicalRefName = asm.getCanonicalRefName(region.refName);
+        if (!canonicalRefName) {
+            throw new Error(`Could not find refName ${refName} in ${asm.name}`);
+        }
+        const parentRegion = regions.find(r => r.refName === canonicalRefName);
+        if (!parentRegion) {
+            throw new Error(`Could not find refName ${refName} in ${asmName}`);
+        }
+        return {
+            ...region,
+            assemblyName: asmName,
+            parentRegion,
+        };
+    }));
+}
+exports.generateLocations = generateLocations;
+/**
+ * Parses locString or space separated set of locStrings into location objects
+ * Example inputs:
+ * "chr1"
+ * "chr1:1-100"
+ * "chr1:1..100"
+ * "chr1 chr2"
+ * "chr1:1-100 chr2:1-100"
+ * "chr1 100 200" equivalent to "chr1:1-100"
+ *
+ * Used by navToLocString
+ */
+function parseLocStrings(input, assemblyName, isValidRefName) {
+    const inputs = input
+        .split(/(\s+)/)
+        .map(f => f.trim())
+        .filter(f => !!f);
+    // first try interpreting as a whitespace-separated sequence of
+    // multiple locstrings
+    try {
+        return inputs.map(loc => (0, util_1.parseLocString)(loc, ref => isValidRefName(ref, assemblyName)));
+    }
+    catch (e) {
+        // if this fails, try interpreting as a whitespace-separated refname,
+        // start, end if start and end are integer inputs
+        const [refName, start, end] = inputs;
+        if (`${e}`.match(/Unknown reference sequence/) &&
+            Number.isInteger(+start) &&
+            Number.isInteger(+end)) {
+            return [
+                (0, util_1.parseLocString)(refName + ':' + start + '..' + end, ref => isValidRefName(ref, assemblyName)),
+            ];
+        }
+        else {
+            throw e;
+        }
+    }
+}
+exports.parseLocStrings = parseLocStrings;
 //# sourceMappingURL=util.js.map

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