@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.2

package/dist/LinearGenomeView/components/GetSequenceDialog.js

@@ -0,0 +1,172 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const mui_1 = require("tss-react/mui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const file_saver_1 = require("file-saver");
+const configuration_1 = require("@jbrowse/core/configuration");
+const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
+const util_1 = require("@jbrowse/core/util");
+const formatFastaStrings_1 = require("@jbrowse/core/util/formatFastaStrings");
+// icons
+const Icons_1 = require("@jbrowse/core/ui/Icons");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const GetApp_1 = __importDefault(require("@mui/icons-material/GetApp"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    dialogContent: {
+        width: '80em',
+    },
+    textAreaFont: {
+        fontFamily: 'Courier New',
+    },
+}));
+/**
+ * Fetches and returns a list features for a given list of regions
+ */
+async function fetchSequence(model, regions, signal) {
+    const session = (0, util_1.getSession)(model);
+    const { leftOffset, rightOffset } = model;
+    if (!leftOffset || !rightOffset) {
+        throw new Error('no offsets on model to use for range');
+    }
+    if (leftOffset.assemblyName !== rightOffset.assemblyName) {
+        throw new Error('not able to fetch sequences from multiple assemblies');
+    }
+    const { rpcManager, assemblyManager } = session;
+    const assemblyName = leftOffset.assemblyName || rightOffset.assemblyName || '';
+    const assembly = assemblyManager.get(assemblyName);
+    if (!assembly) {
+        throw new Error(`assembly ${assemblyName} not found`);
+    }
+    const adapterConfig = (0, configuration_1.getConf)(assembly, ['sequence', 'adapter']);
+    const sessionId = 'getSequence';
+    return rpcManager.call(sessionId, 'CoreGetFeatures', {
+        adapterConfig,
+        regions,
+        sessionId,
+        signal,
+    });
+}
+function SequenceDialog({ model, handleClose, }) {
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const [error, setError] = (0, react_1.useState)();
+    const [sequence, setSequence] = (0, react_1.useState)();
+    const loading = Boolean(sequence === undefined);
+    const { leftOffset, rightOffset } = model;
+    // avoid infinite looping of useEffect
+    // random note: the current selected region can't be a computed because it
+    // uses action on base1dview even though it's on the ephemeral base1dview
+    const regionsSelected = (0, react_1.useMemo)(() => model.getSelectedRegions(leftOffset, rightOffset), [model, leftOffset, rightOffset]);
+    (0, react_1.useEffect)(() => {
+        let active = true;
+        const controller = new AbortController();
+        (async () => {
+            try {
+                if (regionsSelected.length > 0) {
+                    const chunks = await fetchSequence(model, regionsSelected, controller.signal);
+                    if (active) {
+                        setSequence((0, formatFastaStrings_1.formatSeqFasta)(chunks
+                            .filter(f => !!f)
+                            .map(chunk => {
+                            const chunkSeq = chunk.get('seq');
+                            const chunkRefName = chunk.get('refName');
+                            const chunkStart = chunk.get('start') + 1;
+                            const chunkEnd = chunk.get('end');
+                            const chunkLocstring = `${chunkRefName}:${chunkStart}-${chunkEnd}`;
+                            if ((chunkSeq === null || chunkSeq === void 0 ? void 0 : chunkSeq.length) !== chunkEnd - chunkStart + 1) {
+                                throw new Error(`${chunkLocstring} returned ${chunkSeq.length.toLocaleString()} bases, but should have returned ${(chunkEnd - chunkStart).toLocaleString()}`);
+                            }
+                            return { header: chunkLocstring, seq: chunkSeq };
+                        })));
+                    }
+                }
+                else {
+                    throw new Error('Selected region is out of bounds');
+                }
+            }
+            catch (e) {
+                console.error(e);
+                if (active) {
+                    setError(e);
+                }
+            }
+        })();
+        return () => {
+            controller.abort();
+            active = false;
+        };
+    }, [model, session, regionsSelected, setSequence]);
+    const sequenceTooLarge = sequence ? sequence.length > 1000000 : false;
+    return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Reference sequence",
+            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => {
+                    handleClose();
+                    model.setOffsets(undefined, undefined);
+                }, size: "large" },
+                react_1.default.createElement(Close_1.default, null))) : null),
+        react_1.default.createElement(material_1.Divider, null),
+        react_1.default.createElement(material_1.DialogContent, null,
+            error ? react_1.default.createElement(material_1.Typography, { color: "error" }, `${error}`) : null,
+            loading && !error ? (react_1.default.createElement(material_1.Container, null,
+                "Retrieving reference sequence...",
+                react_1.default.createElement(material_1.CircularProgress, { style: {
+                        marginLeft: 10,
+                    }, size: 20, disableShrink: true }))) : null,
+            react_1.default.createElement(material_1.TextField, { "data-testid": "rubberband-sequence", variant: "outlined", multiline: true, minRows: 5, disabled: sequenceTooLarge, className: classes.dialogContent, fullWidth: true, value: sequenceTooLarge
+                    ? 'Reference sequence too large to display, use the download FASTA button'
+                    : sequence, InputProps: {
+                    readOnly: true,
+                    classes: {
+                        input: classes.textAreaFont,
+                    },
+                } })),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { onClick: () => {
+                    (0, copy_to_clipboard_1.default)(sequence || '');
+                    session.notify('Copied to clipboard', 'success');
+                }, disabled: loading || !!error || sequenceTooLarge, color: "primary", startIcon: react_1.default.createElement(Icons_1.ContentCopy, null) }, "Copy to clipboard"),
+            react_1.default.createElement(material_1.Button, { onClick: () => {
+                    const seqFastaFile = new Blob([sequence || ''], {
+                        type: 'text/x-fasta;charset=utf-8',
+                    });
+                    (0, file_saver_1.saveAs)(seqFastaFile, 'jbrowse_ref_seq.fa');
+                }, disabled: loading || !!error, color: "primary", startIcon: react_1.default.createElement(GetApp_1.default, null) }, "Download FASTA"),
+            react_1.default.createElement(material_1.Button, { onClick: handleClose, variant: "contained" }, "Close"))));
+}
+exports.default = (0, mobx_react_1.observer)(SequenceDialog);
+//# sourceMappingURL=GetSequenceDialog.js.map

package/dist/LinearGenomeView/components/GetSequenceDialog.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/Gridlines.js

@@ -3,13 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var blockTypes_1 = require("@jbrowse/core/util/blockTypes");
-var mui_1 = require("tss-react/mui");
-var mobx_react_1 = require("mobx-react");
-var Block_1 = require("../../BaseLinearDisplay/components/Block");
-var util_1 = require("../util");
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const blockTypes_1 = require("@jbrowse/core/util/blockTypes");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const Block_1 = require("../../BaseLinearDisplay/components/Block");
+const util_1 = require("../util");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     verticalGuidesZoomContainer: {
         position: 'absolute',
         height: '100%',
@@ -35,15 +35,14 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     minorTick: {
         background: theme.palette.divider,
     },
-}); });
-var RenderedVerticalGuides = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var _b = useStyles(), classes = _b.classes, cx = _b.cx;
-    return (react_1.default.createElement(react_1.default.Fragment, null, model.staticBlocks.map(function (block, index) {
+}));
+const RenderedVerticalGuides = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes, cx } = useStyles();
+    return (react_1.default.createElement(react_1.default.Fragment, null, model.staticBlocks.map((block, index) => {
         if (block instanceof blockTypes_1.ContentBlock) {
-            var ticks = (0, util_1.makeTicks)(block.start, block.end, model.bpPerPx);
-            return (react_1.default.createElement(Block_1.ContentBlock, { key: "".concat(block.key, "-").concat(index), block: block }, ticks.map(function (tick) {
-                var x = (block.reversed
+            const ticks = (0, util_1.makeTicks)(block.start, block.end, model.bpPerPx);
+            return (react_1.default.createElement(Block_1.ContentBlock, { key: `${block.key}-${index}`, block: block }, ticks.map(tick => {
+                const x = (block.reversed
                     ? block.end - tick.base
                     : tick.base - block.start) / model.bpPerPx;
                 return (react_1.default.createElement("div", { key: tick.base, className: cx(classes.tick, tick.type === 'major' || tick.type === 'labeledMajor'
@@ -60,13 +59,12 @@ var RenderedVerticalGuides = (0, mobx_react_1.observer)(function (_a) {
         return null;
     })));
 });
-function VerticalGuides(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+function VerticalGuides({ model }) {
+    const { classes } = useStyles();
     // find the block that needs pinning to the left side for context
-    var offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
+    const offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
     return (react_1.default.createElement("div", { className: classes.verticalGuidesZoomContainer, style: {
-            transform: model.scaleFactor !== 1 ? "scaleX(".concat(model.scaleFactor, ")") : undefined,
+            transform: model.scaleFactor !== 1 ? `scaleX(${model.scaleFactor})` : undefined,
         } },
         react_1.default.createElement("div", { className: classes.verticalGuidesContainer, style: {
                 left: offsetLeft,

package/dist/LinearGenomeView/components/Gridlines.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Gridlines.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Gridlines.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,8DAIsC;AACtC,uCAA0C;AAC1C,2CAAqC;AAErC,oEAIiD;AAEjD,kCAAmC;AAInC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;KACtB;IACD,uBAAuB,EAAE;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;KACT;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACzC;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO;KAClC;CACF,CAAC,CAAC,CAAA;AACH,MAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,OAAO,CACL,8DACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,IAAI,KAAK,YAAY,yBAAY,EAAE;YACjC,MAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAA;YAC9D,OAAO,CACL,8BAAC,oBAAqB,IAAC,GAAG,EAAE,GAAG,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC9D,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,MAAM,CAAC,GACL,CAAC,KAAK,CAAC,QAAQ;oBACb,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI;oBACvB,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC9C,OAAO,CACL,uCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,IAAI,EACZ,IAAI,CAAC,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc;wBACnD,CAAC,CAAC,OAAO,CAAC,SAAS;wBACnB,CAAC,CAAC,OAAO,CAAC,SAAS,CACtB,EACD,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAClB,CACH,CAAA;YACH,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,wBAAW,EAAE;YAChC,OAAO,8BAAC,mBAAoB,IAAC,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,OAAO,GAAI,CAAA;SACtE;QACD,IAAI,KAAK,YAAY,oCAAuB,EAAE;YAC5C,OAAO,CACL,8BAAC,+BAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,SAAS,cAAc,CAAC,EAAE,KAAK,EAAkB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,iEAAiE;IACjE,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,uCACE,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE;YACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,CAAC,SAAS;SACvE;QAED,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE;gBACL,IAAI,EAAE,UAAU;gBAChB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;aACvC;YAED,8BAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}

package/dist/LinearGenomeView/components/Header.js

@@ -3,21 +3,21 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var mobx_react_1 = require("mobx-react");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var util_1 = require("@jbrowse/core/util");
+const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
 // icons
-var Icons_1 = require("@jbrowse/core/ui/Icons");
-var ArrowForward_1 = __importDefault(require("@mui/icons-material/ArrowForward"));
-var ArrowBack_1 = __importDefault(require("@mui/icons-material/ArrowBack"));
+const Icons_1 = require("@jbrowse/core/ui/Icons");
+const ArrowForward_1 = __importDefault(require("@mui/icons-material/ArrowForward"));
+const ArrowBack_1 = __importDefault(require("@mui/icons-material/ArrowBack"));
 // locals
-var __1 = require("..");
-var OverviewScaleBar_1 = __importDefault(require("./OverviewScaleBar"));
-var ZoomControls_1 = __importDefault(require("./ZoomControls"));
-var SearchBox_1 = __importDefault(require("./SearchBox"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const __1 = require("..");
+const OverviewScaleBar_1 = __importDefault(require("./OverviewScaleBar"));
+const ZoomControls_1 = __importDefault(require("./ZoomControls"));
+const SearchBox_1 = __importDefault(require("./SearchBox"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     headerBar: {
         height: __1.HEADER_BAR_HEIGHT,
         display: 'flex',
@@ -47,31 +47,27 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     buttonSpacer: {
         marginRight: theme.spacing(2),
     },
-}); });
-var HeaderButtons = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+}));
+const HeaderButtons = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes } = useStyles();
     return (react_1.default.createElement(material_1.Button, { onClick: model.activateTrackSelector, className: classes.toggleButton, title: "Open track selector", value: "track_select", color: "secondary" },
         react_1.default.createElement(Icons_1.TrackSelector, { className: classes.buttonSpacer })));
 });
-function PanControls(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+function PanControls({ model }) {
+    const { classes } = useStyles();
     return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(material_1.Button, { variant: "outlined", className: classes.panButton, onClick: function () { return model.slide(-0.9); } },
+        react_1.default.createElement(material_1.Button, { variant: "outlined", className: classes.panButton, onClick: () => model.slide(-0.9) },
             react_1.default.createElement(ArrowBack_1.default, null)),
-        react_1.default.createElement(material_1.Button, { variant: "outlined", className: classes.panButton, onClick: function () { return model.slide(0.9); } },
+        react_1.default.createElement(material_1.Button, { variant: "outlined", className: classes.panButton, onClick: () => model.slide(0.9) },
             react_1.default.createElement(ArrowForward_1.default, null))));
 }
-var RegionWidth = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var coarseTotalBp = model.coarseTotalBp;
+const RegionWidth = (0, mobx_react_1.observer)(({ model }) => {
+    const { classes } = useStyles();
+    const { coarseTotalBp } = model;
     return (react_1.default.createElement(material_1.Typography, { variant: "body2", color: "textSecondary", className: classes.bp }, (0, util_1.getBpDisplayStr)(coarseTotalBp)));
 });
-var Controls = function (_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
+const Controls = ({ model }) => {
+    const { classes } = useStyles();
     return (react_1.default.createElement("div", { className: classes.headerBar },
         react_1.default.createElement(HeaderButtons, { model: model }),
         react_1.default.createElement("div", { className: classes.spacer }),
@@ -82,8 +78,7 @@ var Controls = function (_a) {
         react_1.default.createElement(ZoomControls_1.default, { model: model }),
         react_1.default.createElement("div", { className: classes.spacer })));
 };
-var LinearGenomeViewHeader = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
+const LinearGenomeViewHeader = (0, mobx_react_1.observer)(({ model }) => {
     return model.hideHeaderOverview ? (react_1.default.createElement(Controls, { model: model })) : (react_1.default.createElement(OverviewScaleBar_1.default, { model: model },
         react_1.default.createElement(Controls, { model: model })));
 });

package/dist/LinearGenomeView/components/Header.js.map

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package/dist/LinearGenomeView/components/HelpDialog.js

@@ -3,25 +3,24 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var Close_1 = __importDefault(require("@mui/icons-material/Close"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     closeButton: {
         position: 'absolute',
         right: theme.spacing(1),
         top: theme.spacing(1),
         color: theme.palette.grey[500],
     },
-}); });
-function HelpDialog(_a) {
-    var handleClose = _a.handleClose;
-    var classes = useStyles().classes;
+}));
+function HelpDialog({ handleClose, }) {
+    const { classes } = useStyles();
     return (react_1.default.createElement(material_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
         react_1.default.createElement(material_1.DialogTitle, null,
             "Using the search box",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: function () { return handleClose(); } },
+            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
                 react_1.default.createElement(Close_1.default, null))) : null),
         react_1.default.createElement(material_1.Divider, null),
         react_1.default.createElement(material_1.DialogContent, null,
@@ -59,7 +58,7 @@ function HelpDialog(_a) {
                     " - use whitespace separated refname, start, end"))),
         react_1.default.createElement(material_1.Divider, null),
         react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { onClick: function () { return handleClose(); }, color: "primary" }, "Close"))));
+            react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Close"))));
 }
 exports.default = HelpDialog;
 //# sourceMappingURL=HelpDialog.js.map

package/dist/LinearGenomeView/components/HelpDialog.js.map

@@ -1 +1 @@
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