@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +27 -54
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Block.js +17 -28
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +19 -21
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +27 -48
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Tooltip.js +29 -58
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +242 -363
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +77 -129
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/LinearBareDisplay/configSchema.js +2 -2
- package/dist/LinearBareDisplay/configSchema.js.map +1 -1
- package/dist/LinearBareDisplay/model.js +13 -19
- package/dist/LinearBareDisplay/model.js.map +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +14 -31
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -1
- package/dist/LinearBasicDisplay/configSchema.js +3 -3
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
- package/dist/LinearBasicDisplay/model.js +119 -147
- package/dist/LinearBasicDisplay/model.js.map +1 -1
- package/dist/LinearGenomeView/components/CenterLine.js +11 -12
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +30 -96
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +172 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/Gridlines.js +18 -20
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +26 -31
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/HelpDialog.js +10 -11
- package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/ImportForm.js +91 -154
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +20 -21
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +86 -157
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +16 -32
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +44 -76
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +94 -117
- package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +90 -172
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberBand.js +51 -71
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/Ruler.js +17 -18
- package/dist/LinearGenomeView/components/Ruler.js.map +1 -1
- package/dist/LinearGenomeView/components/ScaleBar.js +37 -58
- package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +69 -133
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +32 -33
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +104 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackContainer.js +28 -30
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +37 -71
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +32 -49
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +15 -32
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/util.js +14 -87
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +3 -3
- package/dist/LinearGenomeView/index.js +380 -430
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/LinearGenomeView/util.js +17 -36
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.js +75 -146
- package/dist/index.js.map +1 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/esm/LinearGenomeView/components/{SequenceDialog.js → GetSequenceDialog.js} +4 -7
- package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/ImportForm.js +1 -0
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -2
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +4 -12
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.js +0 -2
- package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberBand.js +0 -1
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +76 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/esm/LinearGenomeView/index.d.ts +3 -3
- package/esm/LinearGenomeView/index.js +26 -19
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/package.json +2 -3
- package/src/LinearGenomeView/components/{SequenceDialog.tsx → GetSequenceDialog.tsx} +4 -17
- package/src/LinearGenomeView/components/ImportForm.tsx +1 -0
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +3 -3
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +5 -15
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +0 -2
- package/src/LinearGenomeView/components/RubberBand.tsx +0 -1
- package/src/LinearGenomeView/components/SearchBox.tsx +1 -1
- package/src/LinearGenomeView/components/SequenceSearchDialog.tsx +165 -0
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +14 -14
- package/src/LinearGenomeView/index.tsx +32 -25
- package/dist/LinearGenomeView/components/SequenceDialog.js +0 -242
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +0 -1
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var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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const react_1 = __importStar(require("react"));
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const material_1 = require("@mui/material");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const mui_1 = require("tss-react/mui");
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const mobx_react_1 = require("mobx-react");
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const util_1 = require("@jbrowse/core/util");
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// icons
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const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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const useStyles = (0, mui_1.makeStyles)()(theme => ({
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closeButton: {
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position: 'absolute',
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right: theme.spacing(1),
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dialogContent: {
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}));
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function SequenceDialog({ model, handleClose, }) {
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const [value, setValue] = (0, react_1.useState)('');
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const [searchForward, setSearchForward] = (0, react_1.useState)(true);
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const [searchReverse, setSearchReverse] = (0, react_1.useState)(true);
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}
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return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
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react_1.default.createElement(material_1.DialogTitle, null,
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"Sequence search",
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handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
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react_1.default.createElement(Close_1.default, null))) : null),
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react_1.default.createElement(material_1.Divider, null),
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react_1.default.createElement(material_1.DialogContent, { className: classes.dialogContent },
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react_1.default.createElement(material_1.Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
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react_1.default.createElement(material_1.TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),
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react_1.default.createElement(material_1.FormGroup, null,
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react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: searchForward, onChange: event => setSearchForward(event.target.checked) }), label: "Search forward strand" }),
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react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: searchReverse, onChange: event => setSearchReverse(event.target.checked) }), label: "Search reverse strand" }),
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react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: caseInsensitive, onChange: event => setCaseInsensitive(event.target.checked) }), label: "Case insensitive" })),
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error ? react_1.default.createElement(material_1.Typography, { color: "error" }, `${error}`) : null),
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react_1.default.createElement(material_1.DialogActions, null,
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react_1.default.createElement(material_1.Button, { onClick: () => {
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var _a;
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if (value) {
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const trackId = `sequence_search_${+Date.now()}`;
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const session = (0, util_1.getSession)(model);
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const { assemblyManager } = session;
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const assemblyName = model.assemblyNames[0];
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session.addTrackConf({
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trackId,
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name: `Sequence search ${value}`,
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assemblyNames: [assemblyName],
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type: 'FeatureTrack',
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adapter: {
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type: 'SequenceSearchAdapter',
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search: value,
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searchForward,
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searchReverse,
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caseInsensitive,
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sequenceAdapter: (0, mobx_state_tree_1.getSnapshot)((_a = assemblyManager.get(assemblyName)) === null || _a === void 0 ? void 0 : _a.configuration.sequence.adapter),
|
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},
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});
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model.toggleTrack(trackId);
|
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}
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handleClose();
|
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}, variant: "contained", color: "primary" }, "Submit"),
|
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react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), variant: "contained", color: "secondary" }, "Close"))));
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}
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exports.default = (0, mobx_react_1.observer)(SequenceDialog);
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//# sourceMappingURL=SequenceSearchDialog.js.map
|
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@@ -0,0 +1 @@
|
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1
|
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{"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAasB;AACtB,qDAA6C;AAC7C,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAE/C,QAAQ;AACR,sEAAiD;AAKjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,8BAAC,iBAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,IAAI,EAAC,OAAO;gBAEZ,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QAEX,8BAAC,wBAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,8BAAC,qBAAU,0KAIE;YACb,8BAAC,oBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,8BAAC,oBAAS;gBACR,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,IAAA,6BAAW,EAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
|
|
@@ -26,16 +26,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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26
26
|
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|
|
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|
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|
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28
|
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|
|
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|
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|
|
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|
+
const mui_1 = require("tss-react/mui");
|
|
32
|
+
const mobx_react_1 = require("mobx-react");
|
|
33
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
34
|
+
const configuration_1 = require("@jbrowse/core/configuration");
|
|
35
|
+
const ui_1 = require("@jbrowse/core/ui");
|
|
36
|
+
const util_1 = require("@jbrowse/core/util");
|
|
37
|
+
const TrackLabel_1 = __importDefault(require("./TrackLabel"));
|
|
38
|
+
const useStyles = (0, mui_1.makeStyles)()({
|
|
39
39
|
root: {
|
|
40
40
|
marginTop: 2,
|
|
41
41
|
},
|
|
@@ -81,42 +81,40 @@ var useStyles = (0, mui_1.makeStyles)()({
|
|
|
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81
|
zIndex: 2,
|
|
82
82
|
},
|
|
83
83
|
});
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|
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var labelStyle = view.trackLabels !== 'overlapping' || display.prefersOffset
|
|
84
|
+
const TrackContainerLabel = (0, mobx_react_1.observer)(({ model, view }) => {
|
|
85
|
+
const { classes, cx } = useStyles();
|
|
86
|
+
const display = model.displays[0];
|
|
87
|
+
const { trackLabel, trackLabelOverlap, trackLabelOffset } = classes;
|
|
88
|
+
const labelStyle = view.trackLabels !== 'overlapping' || display.prefersOffset
|
|
90
89
|
? trackLabelOffset
|
|
91
90
|
: trackLabelOverlap;
|
|
92
91
|
return view.trackLabels !== 'hidden' ? (react_1.default.createElement(TrackLabel_1.default, { track: model, className: cx(trackLabel, labelStyle) })) : null;
|
|
93
92
|
});
|
|
94
|
-
function TrackContainer(
|
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|
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|
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|
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|
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|
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|
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103
|
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var debouncedOnDragEnter = (0, util_1.useDebouncedCallback)(function () {
|
|
93
|
+
function TrackContainer({ model, track, }) {
|
|
94
|
+
const { classes } = useStyles();
|
|
95
|
+
const display = track.displays[0];
|
|
96
|
+
const { horizontalScroll, draggingTrackId, moveTrack } = model;
|
|
97
|
+
const { height, RenderingComponent, DisplayBlurb } = display;
|
|
98
|
+
const trackId = (0, configuration_1.getConf)(track, 'trackId');
|
|
99
|
+
const ref = (0, react_1.useRef)(null);
|
|
100
|
+
const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
|
|
101
|
+
const debouncedOnDragEnter = (0, util_1.useDebouncedCallback)(() => {
|
|
104
102
|
if ((0, mobx_state_tree_1.isAlive)(display) && dimmed) {
|
|
105
103
|
moveTrack(draggingTrackId, track.id);
|
|
106
104
|
}
|
|
107
105
|
}, 100);
|
|
108
|
-
(0, react_1.useEffect)(
|
|
106
|
+
(0, react_1.useEffect)(() => {
|
|
109
107
|
if (ref.current) {
|
|
110
108
|
model.trackRefs[trackId] = ref.current;
|
|
111
109
|
}
|
|
112
|
-
return
|
|
110
|
+
return () => {
|
|
113
111
|
delete model.trackRefs[trackId];
|
|
114
112
|
};
|
|
115
113
|
}, [model.trackRefs, trackId]);
|
|
116
114
|
return (react_1.default.createElement(material_1.Paper, { className: classes.root, variant: "outlined" },
|
|
117
115
|
react_1.default.createElement(TrackContainerLabel, { model: track, view: model }),
|
|
118
|
-
react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height
|
|
119
|
-
react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform:
|
|
116
|
+
react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height }, onScroll: event => display.setScrollTop(event.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` },
|
|
117
|
+
react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
|
|
120
118
|
react_1.default.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
|
|
121
119
|
DisplayBlurb ? (react_1.default.createElement("div", { style: {
|
|
122
120
|
position: 'absolute',
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA
|
|
1
|
+
{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAgD;AAChD,4CAAqC;AACrC,uCAA0C;AAC1C,2CAAqC;AACrC,qDAAyC;AAEzC,+DAAqD;AACrD,yCAA+C;AAC/C,6CAAyD;AAIzD,8DAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,oBAAoB,GAAG,IAAA,2BAAoB,EAAC,GAAG,EAAE;QACrD,IAAI,IAAA,yBAAO,EAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,8BAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,aAAa,CAAC,SAAS,CAAC,EACtE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE;YAE7D,uCACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;gBAEpD,8BAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;YAEL,YAAY,CAAC,CAAC,CAAC,CACd,uCACE,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,IAAI,EAAE,CAAC;oBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;iBACzB;gBAED,8BAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACJ;QACN,uCACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,8BAAC,iBAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
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const onDragStart = (event) => {
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const items = [
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return (react_1.default.createElement(material_1.Paper, { ref: ref, className: cx(className, classes.root) },
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react_1.default.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd:
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react_1.default.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
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react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
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react_1.default.createElement(material_1.IconButton, { onClick:
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react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
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react_1.default.createElement(Close_1.default, { fontSize: "small" })),
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react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
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react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
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react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
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react_1.default.createElement(CascadingMenu_1.default,
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react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
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});
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exports.default = (0, mobx_react_1.observer)(TrackLabel);
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//# sourceMappingURL=TrackLabel.js.map
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@@ -1 +1 @@
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{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"
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{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AAErC,+DAIoC;AACpC,mFAA0D;AAC1D,6CAAkE;AAElE,4CAAoE;AACpE,uCAA0C;AAE1C,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AAIjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,uBAAuB,IAAA,8BAAc,EAAC,GAAG,EAAE,MAAM,CAAC,GAAG;gBACvD,CAAC,CAAC,oBAAoB,CAAC,CAC1B,CAAA;KACF;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}
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return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
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{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"
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