@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.2

package/dist/LinearGenomeView/components/ZoomControls.js

@@ -22,33 +22,17 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var mobx_react_1 = require("mobx-react");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
-var ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
-var useStyles = (0, mui_1.makeStyles)()({
+const react_1 = __importStar(require("react"));
+const mobx_react_1 = require("mobx-react");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
+const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
+const useStyles = (0, mui_1.makeStyles)()({
     container: {
         display: 'flex',
         flexDirection: 'row',
@@ -58,19 +42,18 @@ var useStyles = (0, mui_1.makeStyles)()({
         width: 70,
     },
 });
-function ZoomControls(_a) {
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var maxBpPerPx = model.maxBpPerPx, minBpPerPx = model.minBpPerPx, bpPerPx = model.bpPerPx, scaleFactor = model.scaleFactor;
-    var _b = __read((0, react_1.useState)(-Math.log2(bpPerPx) * 100), 2), value = _b[0], setValue = _b[1];
-    (0, react_1.useEffect)(function () {
+function ZoomControls({ model }) {
+    const { classes } = useStyles();
+    const { maxBpPerPx, minBpPerPx, bpPerPx, scaleFactor } = model;
+    const [value, setValue] = (0, react_1.useState)(-Math.log2(bpPerPx) * 100);
+    (0, react_1.useEffect)(() => {
         setValue(-Math.log2(bpPerPx) * 100);
     }, [setValue, bpPerPx]);
     return (react_1.default.createElement("div", { className: classes.container },
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: function () { return model.zoom(bpPerPx * 2); }, disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
             react_1.default.createElement(ZoomOut_1.default, null)),
-        react_1.default.createElement(material_1.Slider, { size: "small", className: classes.slider, value: value, min: -Math.log2(maxBpPerPx) * 100, max: -Math.log2(minBpPerPx) * 100, onChange: function (_, val) { return setValue(val); }, onChangeCommitted: function () { return model.zoomTo(Math.pow(2, (-value / 100))); }, disabled: scaleFactor !== 1 }),
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: function () { return model.zoom(model.bpPerPx / 2); }, disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        react_1.default.createElement(material_1.Slider, { size: "small", className: classes.slider, value: value, min: -Math.log2(maxBpPerPx) * 100, max: -Math.log2(minBpPerPx) * 100, onChange: (_, val) => setValue(val), onChangeCommitted: () => model.zoomTo(2 ** (-value / 100)), disabled: scaleFactor !== 1 }),
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
             react_1.default.createElement(ZoomIn_1.default, null))));
 }
 exports.default = (0, mobx_react_1.observer)(ZoomControls);

package/dist/LinearGenomeView/components/ZoomControls.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/util.js

@@ -1,98 +1,25 @@
 "use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
-var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
-    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
-        if (ar || !(i in from)) {
-            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
-            ar[i] = from[i];
-        }
-    }
-    return to.concat(ar || Array.prototype.slice.call(from));
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.fetchResults = exports.dedupe = void 0;
-var BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
-function dedupe(results, cb) {
-    if (results === void 0) { results = []; }
-    return results.filter(function (elt, idx, self) { return idx === self.findIndex(function (t) { return cb(t) === cb(elt); }); });
+const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
+function dedupe(results = [], cb) {
+    return results.filter((elt, idx, self) => idx === self.findIndex(t => cb(t) === cb(elt)));
 }
 exports.dedupe = dedupe;
-function fetchResults(_a) {
-    var _b;
-    var queryString = _a.queryString, searchType = _a.searchType, searchScope = _a.searchScope, rankSearchResults = _a.rankSearchResults, textSearchManager = _a.textSearchManager, assembly = _a.assembly;
-    return __awaiter(this, void 0, void 0, function () {
-        var textSearchResults, refNameResults;
-        return __generator(this, function (_c) {
-            switch (_c.label) {
-                case 0:
-                    if (!textSearchManager) {
-                        console.warn('No text search manager');
-                    }
-                    return [4 /*yield*/, (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
-                            queryString: queryString,
-                            searchType: searchType,
-                        }, searchScope, rankSearchResults))];
-                case 1:
-                    textSearchResults = _c.sent();
-                    refNameResults = (_b = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _b === void 0 ? void 0 : _b.filter(function (ref) { return ref.toLowerCase().startsWith(queryString.toLowerCase()); }).slice(0, 10).map(function (r) { return new BaseResults_1.default({ label: r }); });
-                    return [2 /*return*/, dedupe(__spreadArray(__spreadArray([], __read((refNameResults || [])), false), __read((textSearchResults || [])), false), function (elt) { return elt.getId(); })];
-            }
-        });
-    });
+async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
+    var _a;
+    if (!textSearchManager) {
+        console.warn('No text search manager');
+    }
+    const textSearchResults = await (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
+        queryString,
+        searchType,
+    }, searchScope, rankSearchResults));
+    const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({ label: r }));
+    return dedupe([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
 }
 exports.fetchResults = fetchResults;
 //# sourceMappingURL=util.js.map

package/dist/LinearGenomeView/components/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":";;;;;;AAEA,uFAA6D;AAI7D,SAAgB,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAPD,wBAOC;AAEM,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AArCD,oCAqCC"}

package/dist/LinearGenomeView/index.d.ts

@@ -128,9 +128,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     toggleShowGridlines(): void;
     scrollTo(offsetPx: number): number;
     zoomTo(bpPerPx: number): number;
-    setOffsets(left: undefined | BpOffset, right: undefined | BpOffset): void;
-    setSearchResults(results: BaseResult[] | undefined, query: string | undefined): void;
-    setSequenceDialogOpen(open: boolean): void;
+    setOffsets(left?: BpOffset, right?: BpOffset): void;
+    setSearchResults(results?: BaseResult[], query?: string): void;
+    setGetSequenceDialogOpen(open: boolean): void;
     setNewView(bpPerPx: number, offsetPx: number): void;
     horizontallyFlip(): void;
     showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;