@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +27 -54
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Block.js +17 -28
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +19 -21
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +27 -48
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Tooltip.js +29 -58
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +242 -363
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +77 -129
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/LinearBareDisplay/configSchema.js +2 -2
- package/dist/LinearBareDisplay/configSchema.js.map +1 -1
- package/dist/LinearBareDisplay/model.js +13 -19
- package/dist/LinearBareDisplay/model.js.map +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +14 -31
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -1
- package/dist/LinearBasicDisplay/configSchema.js +3 -3
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
- package/dist/LinearBasicDisplay/model.js +119 -147
- package/dist/LinearBasicDisplay/model.js.map +1 -1
- package/dist/LinearGenomeView/components/CenterLine.js +11 -12
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +30 -96
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +172 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/Gridlines.js +18 -20
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +26 -31
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/HelpDialog.js +10 -11
- package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/ImportForm.js +91 -154
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +20 -21
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +86 -157
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +16 -32
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +44 -76
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +94 -117
- package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +90 -172
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberBand.js +51 -71
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/Ruler.js +17 -18
- package/dist/LinearGenomeView/components/Ruler.js.map +1 -1
- package/dist/LinearGenomeView/components/ScaleBar.js +37 -58
- package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +69 -133
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +32 -33
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +104 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackContainer.js +28 -30
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +37 -71
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +32 -49
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +15 -32
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/util.js +14 -87
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +3 -3
- package/dist/LinearGenomeView/index.js +380 -430
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/LinearGenomeView/util.js +17 -36
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.js +75 -146
- package/dist/index.js.map +1 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/esm/LinearGenomeView/components/{SequenceDialog.js → GetSequenceDialog.js} +4 -7
- package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/ImportForm.js +1 -0
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -2
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +4 -12
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.js +0 -2
- package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberBand.js +0 -1
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +76 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/esm/LinearGenomeView/index.d.ts +3 -3
- package/esm/LinearGenomeView/index.js +26 -19
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/package.json +2 -3
- package/src/LinearGenomeView/components/{SequenceDialog.tsx → GetSequenceDialog.tsx} +4 -17
- package/src/LinearGenomeView/components/ImportForm.tsx +1 -0
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +3 -3
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +5 -15
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +0 -2
- package/src/LinearGenomeView/components/RubberBand.tsx +0 -1
- package/src/LinearGenomeView/components/SearchBox.tsx +1 -1
- package/src/LinearGenomeView/components/SequenceSearchDialog.tsx +165 -0
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +14 -14
- package/src/LinearGenomeView/index.tsx +32 -25
- package/dist/LinearGenomeView/components/SequenceDialog.js +0 -242
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +0 -1
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@@ -114,6 +114,7 @@ const ImportForm = observer(({ model }) => {
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setSelectedAsm(val);
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setValue('');
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}, session: session, selected: selectedAsm, InputProps: { style: { height } } })),
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React.createElement(Grid, { item: true }, selectedAsm ? (err ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
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1
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+
{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,MAAM,EAAE,gBAAgB,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AACzE,OAAO,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAA;AACjE,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAC7D,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAEjD,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AACrC,OAAO,EAAyB,aAAa,EAAE,MAAM,IAAI,CAAA;AACzD,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,uBAAuB,CAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;;IACxD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,iBAAiB,EAAE,GAAG,OAAO,CAAA;IACrE,MAAM,EAAE,iBAAiB,EAAE,uBAAuB,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACrD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;IAElD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IACvC,MAAM,GAAG,GAAG,aAAa,IAAI,WAAW,CAAA;IACxC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,KAAK,GAAG,KAAK,KAAI,MAAA,OAAO,CAAC,CAAC,CAAC,0CAAE,OAAO,CAAA,CAAA;IAE1C,4EAA4E;IAC5E,4CAA4C;IAC5C,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC;QAC5B,KAAK,EAAE,KAAK;KACb,CAAC,CAAA;IAEF,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,KAAa;QAC/C,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,IAAI,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACjC,IAAI,QAAQ,GAAG,KAAK,IAAI,MAAM,CAAC,WAAW,EAAE,IAAI,EAAE,CAAA;QAClD,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QACvC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,KAAI,EAAE,CAAA;QAC3C,IAAI;YACF,yCAAyC;YACzC,8CAA8C;YAC9C,4BAA4B;YAC5B,+CAA+C;YAC/C,IACE,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC;gBAC1B,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;oBACpB,IAAI,KAAK,SAAS;oBAClB,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EACpC;gBACA,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;aAC5C;iBAAM;gBACL,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC;oBACjC,WAAW,EAAE,KAAK;oBAClB,UAAU,EAAE,OAAO;oBACnB,WAAW;oBACX,iBAAiB;oBACjB,iBAAiB;oBACjB,QAAQ;iBACT,CAAC,CAAA;gBACF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;oBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;oBACpD,OAAM;iBACP;qBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;oBAC/B,QAAQ,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAA;oBACnC,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,EAAE,CAAA;iBAClC;gBAED,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;gBAC3C,IAAI,OAAO,EAAE;oBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;iBACzB;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,MAAM,MAAM,GAAG,aAAa,GAAG,CAAC,CAAA;IAEhC,wBAAwB;IACxB,4EAA4E;IAC5E,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC9B,GAAG,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1C,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;YAC/C,8BACE,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACzB,IAAI,KAAK,EAAE;wBACT,oBAAoB,CAAC,KAAK,CAAC,CAAA;qBAC5B;gBACH,CAAC;gBAED,oBAAC,IAAI,IACH,SAAS,QACT,OAAO,EAAE,CAAC,EACV,cAAc,EAAC,QAAQ,EACvB,UAAU,EAAC,QAAQ;oBAEnB,oBAAC,IAAI,IAAC,IAAI;wBACR,oBAAC,gBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE;gCACd,cAAc,CAAC,EAAE,CAAC,CAAA;gCAClB,cAAc,CAAC,GAAG,CAAC,CAAA;gCACnB,QAAQ,CAAC,EAAE,CAAC,CAAA;4BACd,CAAC,EACD,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,EACrB,UAAU,EAAE,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,GACjC,CACG;oBACP,oBAAC,IAAI,IAAC,IAAI,UACP,WAAW,CAAC,CAAC,CAAC,CACb,GAAG,CAAC,CAAC,CAAC,CACJ,oBAAC,SAAS,IAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,GAAI,CACvC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CACV,oBAAC,mBAAmB,IAClB,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,YAAY,CAAC;4BACX,WAAW;4BACX,QAAQ;4BACR,iBAAiB;4BACjB,iBAAiB;4BACjB,WAAW;yBACZ,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,YAAY,EAAE,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,EACrD,KAAK,EAAE,KAAK;wBACZ,0DAA0D;wBAC1D,QAAQ,EAAE,GAAG,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,EAC9B,cAAc,EAAE;4BACd,OAAO,EAAE,UAAU;4BACnB,UAAU,EACR,gDAAgD;4BAClD,KAAK,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE;4BAC5B,UAAU,EAAE,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE;yBAClC,GACD,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,gBAAgB,IACf,IAAI,EAAC,aAAa,EAClB,IAAI,EAAE,EAAE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@@ -8,7 +8,7 @@ import TrackContainer from './TrackContainer';
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8
8
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import TracksContainer from './TracksContainer';
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9
9
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import ImportForm from './ImportForm';
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import MiniControls from './MiniControls';
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11
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-
import
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11
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+
import GetSequenceDialog from './GetSequenceDialog';
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12
12
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import SearchResultsDialog from './SearchResultsDialog';
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const useStyles = makeStyles()(theme => ({
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note: {
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@@ -47,7 +47,7 @@ const LinearGenomeView = observer(({ model }) => {
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return React.createElement(ImportForm, { model: model });
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}
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return (React.createElement("div", { style: { position: 'relative' } },
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-
model.seqDialogDisplayed ? (React.createElement(
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model.seqDialogDisplayed ? (React.createElement(GetSequenceDialog, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
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model.isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
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!hideHeader ? (React.createElement(Header, { model: model })) : (React.createElement("div", { style: {
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53
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position: 'absolute',
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,aAAa,IAAI,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC3E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,MAAM,MAAM,UAAU,CAAA;AAC7B,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,
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1
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+
{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,aAAa,IAAI,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC3E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,MAAM,MAAM,UAAU,CAAA;AAC7B,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AAIvD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,aAAa,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAChC;IACD,IAAI,EAAE;QACJ,UAAU,EAAE;YACV,OAAO,EAAE,cAAc;YACvB,SAAS,EAAE,yBAAyB;YACpC,OAAO,EAAE,KAAK;YACd,KAAK,EAAE,KAAK;YACZ,SAAS,EAAE,MAAM;SAClB;KACF;IACD,qBAAqB,EAAE;QACrB,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK;SACf;QACD,KAAK,EAAE;YACL,OAAO,EAAE,MAAM;SAChB;QACD,KAAK,EAAE;YACL,OAAO,EAAE,OAAO;SACjB;KACF;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,gBAAgB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9D,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IAC7E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,IAAI,CAAC,WAAW,IAAI,CAAC,KAAK,EAAE;QAC1B,OAAO,CACL,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,IAAI,cAEpC,CACd,CAAA;KACF;IACD,IAAI,CAAC,mBAAmB,IAAI,KAAK,EAAE;QACjC,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACpC;IAED,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QACjC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC1B,oBAAC,iBAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,wBAAwB,CAAC,KAAK,CAAC,GACxD,CACH,CAAC,CAAC,CAAC,IAAI;QACP,KAAK,CAAC,uBAAuB,CAAC,CAAC,CAAC,CAC/B,oBAAC,mBAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI;QACP,CAAC,UAAU,CAAC,CAAC,CAAC,CACb,oBAAC,MAAM,IAAC,KAAK,EAAE,KAAK,GAAI,CACzB,CAAC,CAAC,CAAC,CACF,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,KAAK,EAAE,CAAC;gBACR,MAAM,EAAE,IAAI;aACb;YAED,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACP;QACD,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,IAC1B,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAChB,oBAAC,KAAK,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAE,OAAO,CAAC,IAAI,IAC9C,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC3B;YACE,oBAAC,UAAU,4BAA+B;YAC1C,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,EACvB,SAAS,EAAE,oBAAC,iBAAiB,OAAG,0BAGzB,CACR,CACJ,CAAC,CAAC,CAAC,CACF,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAQ,CACvC,CACK,CACT,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,oBAAC,cAAc,IAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CAC9D,CAAC,CACH,CACe,CACd,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
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@@ -1,5 +1,4 @@
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1
1
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import React from 'react';
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2
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import ReactPropTypes from 'prop-types';
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import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
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import { LinearGenomeViewModel } from '..';
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declare type LGV = LinearGenomeViewModel;
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@@ -8,15 +7,5 @@ declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
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overview: Base1DViewModel;
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8
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ControlComponent?: React.ReactElement;
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}): JSX.Element;
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-
declare namespace OverviewRubberBand {
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var propTypes: {
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model: ReactPropTypes.Validator<any>;
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overview: ReactPropTypes.Validator<any>;
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ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
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};
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var defaultProps: {
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ControlComponent: JSX.Element;
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};
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}
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declare const _default: typeof OverviewRubberBand;
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export default _default;
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@@ -2,11 +2,9 @@ import React, { useRef, useEffect, useState } from 'react';
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import { Popover, Tooltip, Typography, alpha } from '@mui/material';
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import { makeStyles } from 'tss-react/mui';
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4
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import { getSession, stringify } from '@jbrowse/core/util';
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5
|
-
import { observer
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6
|
-
import ReactPropTypes from 'prop-types';
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5
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+
import { observer } from 'mobx-react';
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6
|
import { HEADER_OVERVIEW_HEIGHT } from '..';
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7
|
const useStyles = makeStyles()(theme => {
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-
// @ts-ignore
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|
const { tertiary, primary } = theme.palette;
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11
9
|
const background = tertiary
|
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12
10
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? alpha(tertiary.main, 0.7)
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@@ -81,7 +79,9 @@ function OverviewRubberBand({ model, overview, ControlComponent = React.createEl
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81
79
|
// click and drag
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82
80
|
if (startX !== undefined && currentX !== undefined) {
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83
81
|
if (Math.abs(currentX - startX) > 3) {
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84
|
-
|
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82
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+
const left = Math.min(startX, currentX);
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83
|
+
const right = Math.max(startX, currentX);
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84
|
+
model.moveTo(overview.pxToBp(left - cytobandOffset), overview.pxToBp(right - cytobandOffset));
|
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85
85
|
}
|
|
86
86
|
}
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87
87
|
// just a click
|
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@@ -185,13 +185,5 @@ function OverviewRubberBand({ model, overview, ControlComponent = React.createEl
|
|
|
185
185
|
} }),
|
|
186
186
|
React.createElement("div", { "data-testid": "rubberBand_controls", className: classes.rubberBandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
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187
187
|
}
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188
|
-
OverviewRubberBand.propTypes = {
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189
|
-
model: MobxPropTypes.objectOrObservableObject.isRequired,
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190
|
-
overview: MobxPropTypes.objectOrObservableObject.isRequired,
|
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191
|
-
ControlComponent: ReactPropTypes.node,
|
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192
|
-
};
|
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193
|
-
OverviewRubberBand.defaultProps = {
|
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194
|
-
ControlComponent: React.createElement("div", null),
|
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195
|
-
};
|
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196
188
|
export default observer(OverviewRubberBand);
|
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197
189
|
//# sourceMappingURL=OverviewRubberBand.js.map
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@@ -1 +1 @@
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|
1
|
-
{"version":3,"file":"OverviewRubberBand.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewRubberBand.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,
|
|
1
|
+
{"version":3,"file":"OverviewRubberBand.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewRubberBand.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAyB,sBAAsB,EAAE,MAAM,IAAI,CAAA;AAIlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC;QAC3B,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;IAC5B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;QACD,KAAK,EAAE;YACL,aAAa,EAAE,MAAM;YACrB,MAAM,EAAE,MAAM;YACd,KAAK,EAAE,CAAC;YACR,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;SACX;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAC3B,CAAC,EACC,KAAK,EACL,IAAI,EACJ,MAAM,EACN,QAAQ,GAMT,EAAE,EAAE;;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAE7C,MAAM,EAAE,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;IACnD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC,YAAY,CAAC,CAAA;IACrD,MAAM,QAAQ,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,SAAS,0CAAE,IAAI,CACxC,CAAC,CAAC,EAAE,CACF,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC;QACzB,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC;QACvB,EAAE,CAAC,OAAO,KAAK,QAAQ,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAChE,CAAA;IAED,OAAO,CACL,oBAAC,OAAO,IACN,IAAI,EAAE,IAAI,EACV,SAAS,EAAC,KAAK,EACf,KAAK,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,EAAE,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,EACvD,KAAK;QAEL,6BACE,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,KAAK,EAAE;gBACL,IAAI,EAAE,MAAM;aACb,GACD,CACM,CACX,CAAA;AACH,CAAC,CACF,CAAA;AAED,SAAS,kBAAkB,CAAC,EAC1B,KAAK,EACL,QAAQ,EACR,gBAAgB,GAAG,gCAAO,GAK3B;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAClD,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,WAAW,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAChD,MAAM,aAAa,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAClD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,aAAa,GAAG,MAAM,KAAK,SAAS,CAAA;IAE1C,SAAS,CAAC,GAAG,EAAE;QACb,SAAS,eAAe,CAAC,KAAiB;YACxC,MAAM,GAAG,GAAG,WAAW,CAAC,OAAO,CAAA;YAC/B,IAAI,GAAG,IAAI,aAAa,EAAE;gBACxB,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;gBAClE,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,SAAS,aAAa;YACpB,iBAAiB;YACjB,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,IAAI,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,EAAE;oBACnC,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACvC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACxC,KAAK,CAAC,MAAM,CACV,QAAQ,CAAC,MAAM,CAAC,IAAI,GAAG,cAAc,CAAC,EACtC,QAAQ,CAAC,MAAM,CAAC,KAAK,GAAG,cAAc,CAAC,CACxC,CAAA;iBACF;aACF;YAED,eAAe;YACf,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;gBACtD,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE;oBAClB,UAAU,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAA;oBACpD,OAAO,CAAC,KAAK,CAAC,0BAA0B,EAAE,KAAK,CAAC,CAAA;iBACjD;qBAAM;oBACL,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,KAAK,CAAC,CAAA;iBACpE;aACF;YACD,SAAS,CAAC,SAAS,CAAC,CAAA;YACpB,WAAW,CAAC,SAAS,CAAC,CAAA;YAEtB,IAAI,MAAM,KAAK,SAAS,EAAE;gBACxB,SAAS,CAAC,SAAS,CAAC,CAAA;aACrB;QACH,CAAC;QAED,SAAS,aAAa,CAAC,KAAoB;YACzC,IAAI,KAAK,CAAC,GAAG,KAAK,QAAQ,EAAE;gBAC1B,SAAS,CAAC,SAAS,CAAC,CAAA;gBACpB,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,EAAE;gBACV,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;gBAC1D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,aAAa,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,cAAc,CAAC,CAAC,CAAA;IAEtE,SAAS,SAAS,CAAC,KAAuC;QACxD,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACvB,IAAI,WAAW,CAAC,OAAO,EAAE;YACvB,SAAS,CACP,KAAK,CAAC,OAAO,GAAG,WAAW,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CACjE,CAAA;SACF;IACH,CAAC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@@ -65,7 +65,6 @@ const Polygon = observer(({ model, overview, useOffset = true, }) => {
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65
65
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const multiplier = Number(useOffset);
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66
66
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const { interRegionPaddingWidth, offsetPx, dynamicBlocks, cytobandOffset } = model;
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67
67
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const { contentBlocks, totalWidthPxWithoutBorders } = dynamicBlocks;
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68
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-
// @ts-ignore
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69
68
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const { tertiary, primary } = theme.palette;
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70
69
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const polygonColor = tertiary ? tertiary.light : primary.light;
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71
70
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if (!contentBlocks.length) {
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@@ -229,7 +228,6 @@ const ScaleBar = observer(({ model, scale, overview, }) => {
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229
228
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const { dynamicBlocks, showCytobands, cytobandOffset } = model;
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230
229
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const visibleRegions = dynamicBlocks.contentBlocks;
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231
230
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const overviewVisibleRegions = overview.dynamicBlocks;
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232
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-
// @ts-ignore
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233
231
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const { tertiary, primary } = theme.palette;
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234
232
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const scaleBarColor = tertiary ? tertiary.light : primary.light;
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235
233
|
if (!visibleRegions.length) {
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@@ -1 +1 @@
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1
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-
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|
|
1
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+
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@@ -5,7 +5,6 @@ import { makeStyles } from 'tss-react/mui';
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5
5
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import { stringify } from '@jbrowse/core/util';
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6
6
|
import { Menu } from '@jbrowse/core/ui';
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7
7
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const useStyles = makeStyles()(theme => {
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8
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-
// @ts-ignore
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9
8
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const { primary, tertiary } = theme.palette;
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10
9
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const background = tertiary
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11
10
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? alpha(tertiary.main, 0.7)
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"RubberBand.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberBand.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAKvC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,
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1
|
+
{"version":3,"file":"RubberBand.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberBand.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAKvC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC;QAC3B,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;IAC5B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;QACD,KAAK,EAAE;YACL,aAAa,EAAE,MAAM;YACrB,MAAM,EAAE,MAAM;YACd,KAAK,EAAE,CAAC;YACR,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;SACX;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,EAAE,KAAK,EAAE,MAAM,EAAkC,EAAE,EAAE;IACpD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,OAAO,IACN,IAAI,QACJ,SAAS,EAAC,KAAK,EACf,KAAK,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,EACtC,KAAK;QAEL,6BACE,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,KAAK,EAAE;gBACL,IAAI,EAAE,MAAM;gBACZ,UAAU,EAAE,KAAK;aAClB,GACD,CACM,CACX,CAAA;AACH,CAAC,CACF,CAAA;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,gBAAgB,GAAG,gCAAO,GAI3B;IACC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAElD,uDAAuD;IACvD,yDAAyD;IACzD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAIhD,CAAA;IACJ,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,WAAW,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAChD,MAAM,aAAa,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IAClC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,aAAa,GAAG,MAAM,KAAK,SAAS,IAAI,cAAc,KAAK,SAAS,CAAA;IAE1E,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IAEpC,SAAS,CAAC,GAAG,EAAE;QACb,SAAS,cAAc,CAAC,OAAe;YACrC,IAAI,MAAM,KAAK,SAAS,EAAE;gBACxB,OAAM;aACP;YACD,IAAI,MAAM,GAAG,MAAM,CAAA;YACnB,IAAI,OAAO,GAAG,OAAO,CAAA;YACrB,IAAI,OAAO,GAAG,MAAM,EAAE;gBACpB,CAAC;gBAAA,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,CAAA;aACvC;YACD,MAAM,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAA;YACjC,MAAM,WAAW,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;YAEnC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,CAAA;QACpC,CAAC;QAED,SAAS,eAAe,CAAC,KAAiB;YACxC,IAAI,WAAW,CAAC,OAAO,IAAI,aAAa,EAAE;gBACxC,MAAM,SAAS,GACb,KAAK,CAAC,OAAO,GAAG,WAAW,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;gBAClE,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,SAAS,aAAa,CAAC,KAAiB;YACtC,IAAI,MAAM,KAAK,SAAS,IAAI,WAAW,CAAC,OAAO,EAAE;gBAC/C,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;gBAClC,MAAM,GAAG,GAAG,WAAW,CAAC,OAAO,CAAA;gBAC/B,MAAM,OAAO,GAAG,OAAO,GAAG,GAAG,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;gBAC1D,kEAAkE;gBAClE,WAAW;gBACX,iBAAiB,CAAC;oBAChB,OAAO;oBACP,OAAO;oBACP,OAAO;iBACR,CAAC,CAAA;gBACF,MAAM,IAAI,GAAG,cAAc,CAAC,OAAO,CAAC,CAAA;gBACpC,IAAI,IAAI,EAAE;oBACR,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;oBACxC,UAAU,CAAC,UAAU,EAAE,WAAW,CAAC,CAAA;iBACpC;gBACD,SAAS,CAAC,SAAS,CAAC,CAAA;aACrB;QACH,CAAC;QACD,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,CAAC,CAAA;YACrD,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;YACjD,OAAO,GAAG,EAAE;gBACV,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,CAAC,CAAA;gBACxD,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;YACtD,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC,CAAA;IAE/D,SAAS,CAAC,GAAG,EAAE;QACb,IACE,CAAC,aAAa;YACd,QAAQ,KAAK,SAAS;YACtB,MAAM,KAAK,SAAS;YACpB,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,MAAM,CAAC,IAAI,CAAC,EAChC;YACA,WAAW,EAAE,CAAA;SACd;IACH,CAAC,EAAE,CAAC,aAAa,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAA;IAEpD,SAAS,SAAS,CAAC,KAAuC;QACxD,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACvB,MAAM,SAAS,GACb,KAAK,CAAC,OAAO;YACZ,KAAK,CAAC,MAAyB,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;QAC/D,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,WAAW,CAAC,SAAS,CAAC,CAAA;IACxB,CAAC;IAED,SAAS,SAAS,CAAC,KAAuC;QACxD,MAAM,MAAM,GAAG,KAAK,CAAC,MAAwB,CAAA;QAC7C,SAAS,CAAC,KAAK,CAAC,OAAO,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAC,CAAA;IAChE,CAAC;IAED,SAAS,QAAQ;QACf,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,KAAK,CAAC,UAAU,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,WAAW;QAClB,iBAAiB,CAAC,SAAS,CAAC,CAAA;QAC5B,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,WAAW,CAAC,SAAS,CAAC,CAAA;IACxB,CAAC;IAED,MAAM,IAAI,GAAG,OAAO,CAAC,cAAc,CAAC,CAAA;IAEpC,SAAS,mBAAmB,CAAC,CAAU,EAAE,QAAkB;QACzD,QAAQ,EAAE,CAAA;QACV,WAAW,EAAE,CAAA;IACf,CAAC;IAED,IAAI,MAAM,KAAK,SAAS,EAAE;QACxB,OAAO,CACL;YACG,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAA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@@ -1 +1 @@
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1
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-
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;
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1
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+
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAG/C,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AACrC,OAAO,EAAyB,OAAO,EAAE,aAAa,EAAE,MAAM,IAAI,CAAA;AAElE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;QACpD,IAAI,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACjC,IAAI,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACnC,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;QAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QACvC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,KAAI,EAAE,CAAA;QAC3C,IAAI;YACF,yCAAyC;YACzC,8CAA8C;YAC9C,4BAA4B;YAC5B,+CAA+C;YAC/C,IACE,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC;gBAC1B,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;oBACpB,IAAI,KAAK,SAAS;oBAClB,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EACpC;gBACA,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;iBAAM;gBACL,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC;oBACjC,WAAW,EAAE,KAAK;oBAClB,UAAU,EAAE,OAAO;oBACnB,WAAW;oBACX,iBAAiB;oBACjB,iBAAiB;oBACjB,QAAQ;iBACT,CAAC,CAAA;gBACF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;oBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;oBACpD,OAAM;iBACP;qBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;oBAC/B,QAAQ,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAA;oBACnC,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,EAAE,CAAA;iBAClC;gBAED,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;gBAC5C,IAAI,OAAO,EAAE;oBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;iBACzB;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,oBAAC,mBAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,YAAY,CAAC;YACX,WAAW;YACX,WAAW;YACX,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;SACT,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,aAAa;oBACrB,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,SAAS,CAAC,CAAA"}
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File without changes
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@@ -0,0 +1,76 @@
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1
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+
import React, { useState } from 'react';
|
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2
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+
import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, Divider, FormGroup, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
|
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3
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+
import { getSnapshot } from 'mobx-state-tree';
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4
|
+
import { makeStyles } from 'tss-react/mui';
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|
5
|
+
import { observer } from 'mobx-react';
|
|
6
|
+
import { getSession } from '@jbrowse/core/util';
|
|
7
|
+
// icons
|
|
8
|
+
import CloseIcon from '@mui/icons-material/Close';
|
|
9
|
+
const useStyles = makeStyles()(theme => ({
|
|
10
|
+
closeButton: {
|
|
11
|
+
position: 'absolute',
|
|
12
|
+
right: theme.spacing(1),
|
|
13
|
+
top: theme.spacing(1),
|
|
14
|
+
color: theme.palette.grey[500],
|
|
15
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+
},
|
|
16
|
+
dialogContent: {
|
|
17
|
+
width: '40em',
|
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18
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+
},
|
|
19
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+
}));
|
|
20
|
+
function SequenceDialog({ model, handleClose, }) {
|
|
21
|
+
const { classes } = useStyles();
|
|
22
|
+
const [value, setValue] = useState('');
|
|
23
|
+
const [searchForward, setSearchForward] = useState(true);
|
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24
|
+
const [searchReverse, setSearchReverse] = useState(true);
|
|
25
|
+
const [caseInsensitive, setCaseInsensitive] = useState(true);
|
|
26
|
+
let error;
|
|
27
|
+
try {
|
|
28
|
+
new RegExp(value);
|
|
29
|
+
}
|
|
30
|
+
catch (e) {
|
|
31
|
+
error = e;
|
|
32
|
+
}
|
|
33
|
+
return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
|
|
34
|
+
React.createElement(DialogTitle, null,
|
|
35
|
+
"Sequence search",
|
|
36
|
+
handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
|
|
37
|
+
React.createElement(CloseIcon, null))) : null),
|
|
38
|
+
React.createElement(Divider, null),
|
|
39
|
+
React.createElement(DialogContent, { className: classes.dialogContent },
|
|
40
|
+
React.createElement(Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
|
|
41
|
+
React.createElement(TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),
|
|
42
|
+
React.createElement(FormGroup, null,
|
|
43
|
+
React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: searchForward, onChange: event => setSearchForward(event.target.checked) }), label: "Search forward strand" }),
|
|
44
|
+
React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: searchReverse, onChange: event => setSearchReverse(event.target.checked) }), label: "Search reverse strand" }),
|
|
45
|
+
React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: caseInsensitive, onChange: event => setCaseInsensitive(event.target.checked) }), label: "Case insensitive" })),
|
|
46
|
+
error ? React.createElement(Typography, { color: "error" }, `${error}`) : null),
|
|
47
|
+
React.createElement(DialogActions, null,
|
|
48
|
+
React.createElement(Button, { onClick: () => {
|
|
49
|
+
var _a;
|
|
50
|
+
if (value) {
|
|
51
|
+
const trackId = `sequence_search_${+Date.now()}`;
|
|
52
|
+
const session = getSession(model);
|
|
53
|
+
const { assemblyManager } = session;
|
|
54
|
+
const assemblyName = model.assemblyNames[0];
|
|
55
|
+
session.addTrackConf({
|
|
56
|
+
trackId,
|
|
57
|
+
name: `Sequence search ${value}`,
|
|
58
|
+
assemblyNames: [assemblyName],
|
|
59
|
+
type: 'FeatureTrack',
|
|
60
|
+
adapter: {
|
|
61
|
+
type: 'SequenceSearchAdapter',
|
|
62
|
+
search: value,
|
|
63
|
+
searchForward,
|
|
64
|
+
searchReverse,
|
|
65
|
+
caseInsensitive,
|
|
66
|
+
sequenceAdapter: getSnapshot((_a = assemblyManager.get(assemblyName)) === null || _a === void 0 ? void 0 : _a.configuration.sequence.adapter),
|
|
67
|
+
},
|
|
68
|
+
});
|
|
69
|
+
model.toggleTrack(trackId);
|
|
70
|
+
}
|
|
71
|
+
handleClose();
|
|
72
|
+
}, variant: "contained", color: "primary" }, "Submit"),
|
|
73
|
+
React.createElement(Button, { onClick: () => handleClose(), variant: "contained", color: "secondary" }, "Close"))));
|
|
74
|
+
}
|
|
75
|
+
export default observer(SequenceDialog);
|
|
76
|
+
//# sourceMappingURL=SequenceSearchDialog.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,SAAS,EACT,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAKjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QAEX,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,oBAAC,UAAU,0KAIE;YACb,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,oBAAC,SAAS;gBACR,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,WAAW,CAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
|
|
@@ -128,9 +128,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
128
128
|
toggleShowGridlines(): void;
|
|
129
129
|
scrollTo(offsetPx: number): number;
|
|
130
130
|
zoomTo(bpPerPx: number): number;
|
|
131
|
-
setOffsets(left
|
|
132
|
-
setSearchResults(results
|
|
133
|
-
|
|
131
|
+
setOffsets(left?: BpOffset, right?: BpOffset): void;
|
|
132
|
+
setSearchResults(results?: BaseResult[], query?: string): void;
|
|
133
|
+
setGetSequenceDialogOpen(open: boolean): void;
|
|
134
134
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
135
135
|
horizontallyFlip(): void;
|
|
136
136
|
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import { lazy } from 'react';
|
|
1
2
|
import { getConf } from '@jbrowse/core/configuration';
|
|
2
3
|
import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models';
|
|
3
4
|
import { ElementId, Region as MUIRegion } from '@jbrowse/core/util/types/mst';
|
|
@@ -26,6 +27,7 @@ import { renderToSvg } from './components/LinearGenomeViewSvg';
|
|
|
26
27
|
import RefNameAutocomplete from './components/RefNameAutocomplete';
|
|
27
28
|
import SearchBox from './components/SearchBox';
|
|
28
29
|
import ExportSvgDlg from './components/ExportSvgDialog';
|
|
30
|
+
const SequenceSearchDialog = lazy(() => import('./components/SequenceSearchDialog'));
|
|
29
31
|
function calculateVisibleLocStrings(contentBlocks) {
|
|
30
32
|
if (!contentBlocks.length) {
|
|
31
33
|
return '';
|
|
@@ -298,7 +300,7 @@ export function stateModelFactory(pluginManager) {
|
|
|
298
300
|
self.searchResults = results;
|
|
299
301
|
self.searchQuery = query;
|
|
300
302
|
},
|
|
301
|
-
|
|
303
|
+
setGetSequenceDialogOpen(open) {
|
|
302
304
|
self.seqDialogDisplayed = open;
|
|
303
305
|
},
|
|
304
306
|
setNewView(bpPerPx, offsetPx) {
|
|
@@ -424,7 +426,6 @@ export function stateModelFactory(pluginManager) {
|
|
|
424
426
|
getSelectedRegions(leftOffset, rightOffset) {
|
|
425
427
|
const snap = getSnapshot(self);
|
|
426
428
|
const simView = Base1DView.create({
|
|
427
|
-
// xref https://github.com/mobxjs/mobx-state-tree/issues/1524 for Omit
|
|
428
429
|
...snap,
|
|
429
430
|
interRegionPaddingWidth: self.interRegionPaddingWidth,
|
|
430
431
|
});
|
|
@@ -550,6 +551,15 @@ export function stateModelFactory(pluginManager) {
|
|
|
550
551
|
},
|
|
551
552
|
icon: FolderOpenIcon,
|
|
552
553
|
},
|
|
554
|
+
{
|
|
555
|
+
label: 'Sequence search',
|
|
556
|
+
onClick: () => {
|
|
557
|
+
getSession(self).queueDialog(handleClose => [
|
|
558
|
+
SequenceSearchDialog,
|
|
559
|
+
{ model: self, handleClose },
|
|
560
|
+
]);
|
|
561
|
+
},
|
|
562
|
+
},
|
|
553
563
|
{
|
|
554
564
|
label: 'Export SVG',
|
|
555
565
|
icon: PhotoCameraIcon,
|
|
@@ -606,12 +616,23 @@ export function stateModelFactory(pluginManager) {
|
|
|
606
616
|
onClick: self.toggleNoTracksActive,
|
|
607
617
|
},
|
|
608
618
|
{
|
|
609
|
-
label: 'Show
|
|
619
|
+
label: 'Show guidelines',
|
|
610
620
|
icon: VisibilityIcon,
|
|
611
621
|
type: 'checkbox',
|
|
612
622
|
checked: self.showGridlines,
|
|
613
623
|
onClick: self.toggleShowGridlines,
|
|
614
624
|
},
|
|
625
|
+
...(canShowCytobands
|
|
626
|
+
? [
|
|
627
|
+
{
|
|
628
|
+
label: 'Show ideogram',
|
|
629
|
+
icon: VisibilityIcon,
|
|
630
|
+
type: 'checkbox',
|
|
631
|
+
checked: self.showCytobands,
|
|
632
|
+
onClick: () => self.setShowCytobands(!showCytobands),
|
|
633
|
+
},
|
|
634
|
+
]
|
|
635
|
+
: []),
|
|
615
636
|
{
|
|
616
637
|
label: 'Track labels',
|
|
617
638
|
icon: LabelIcon,
|
|
@@ -639,24 +660,12 @@ export function stateModelFactory(pluginManager) {
|
|
|
639
660
|
},
|
|
640
661
|
],
|
|
641
662
|
},
|
|
642
|
-
...(canShowCytobands
|
|
643
|
-
? [
|
|
644
|
-
{
|
|
645
|
-
label: showCytobands ? 'Hide ideogram' : 'Show ideograms',
|
|
646
|
-
onClick: () => {
|
|
647
|
-
self.setShowCytobands(!showCytobands);
|
|
648
|
-
},
|
|
649
|
-
},
|
|
650
|
-
]
|
|
651
|
-
: []),
|
|
652
663
|
];
|
|
653
664
|
// add track's view level menu options
|
|
654
665
|
for (const [key, value] of self.trackTypeActions.entries()) {
|
|
655
666
|
if (value.length) {
|
|
656
667
|
menuItems.push({ type: 'divider' }, { type: 'subHeader', label: key });
|
|
657
|
-
value.forEach(action =>
|
|
658
|
-
menuItems.push(action);
|
|
659
|
-
});
|
|
668
|
+
value.forEach(action => menuItems.push(action));
|
|
660
669
|
}
|
|
661
670
|
}
|
|
662
671
|
return menuItems;
|
|
@@ -937,9 +946,7 @@ export function stateModelFactory(pluginManager) {
|
|
|
937
946
|
{
|
|
938
947
|
label: 'Get sequence',
|
|
939
948
|
icon: MenuOpenIcon,
|
|
940
|
-
onClick: () =>
|
|
941
|
-
self.setSequenceDialogOpen(true);
|
|
942
|
-
},
|
|
949
|
+
onClick: () => self.setGetSequenceDialogOpen(true),
|
|
943
950
|
},
|
|
944
951
|
];
|
|
945
952
|
},
|