@jbrowse/plugin-linear-genome-view 1.7.10 → 2.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +119 -139
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
- package/dist/BaseLinearDisplay/components/Block.js +53 -74
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -0
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +11 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +64 -103
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +145 -175
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
- package/dist/BaseLinearDisplay/components/Tooltip.js +109 -116
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -0
- package/dist/BaseLinearDisplay/index.js +13 -40
- package/dist/BaseLinearDisplay/index.js.map +1 -0
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +20 -15
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +605 -684
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +15 -22
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +7 -8
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +266 -312
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
- package/dist/LinearBareDisplay/configSchema.js +11 -17
- package/dist/LinearBareDisplay/configSchema.js.map +1 -0
- package/dist/LinearBareDisplay/index.js +7 -20
- package/dist/LinearBareDisplay/index.js.map +1 -0
- package/dist/LinearBareDisplay/model.d.ts +16 -14
- package/dist/LinearBareDisplay/model.js +36 -42
- package/dist/LinearBareDisplay/model.js.map +1 -0
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +76 -85
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
- package/dist/LinearBasicDisplay/configSchema.js +15 -23
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -0
- package/dist/LinearBasicDisplay/index.js +10 -22
- package/dist/LinearBasicDisplay/index.js.map +1 -0
- package/dist/LinearBasicDisplay/model.d.ts +20 -15
- package/dist/LinearBasicDisplay/model.js +180 -159
- package/dist/LinearBasicDisplay/model.js.map +1 -0
- package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -8
- package/dist/LinearGenomeView/components/CenterLine.js +60 -74
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +141 -141
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/Gridlines.d.ts +8 -0
- package/dist/LinearGenomeView/components/Gridlines.js +78 -0
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/dist/LinearGenomeView/components/Header.js +70 -126
- package/dist/LinearGenomeView/components/Header.js.map +1 -0
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +0 -1
- package/dist/LinearGenomeView/components/HelpDialog.js +62 -44
- package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/ImportForm.js +223 -320
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.js +64 -124
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +198 -337
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
- package/dist/LinearGenomeView/components/MiniControls.js +64 -78
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +229 -293
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +24 -8
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +277 -365
- package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +237 -324
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
- package/dist/LinearGenomeView/components/RubberBand.js +228 -296
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -0
- package/dist/LinearGenomeView/components/Ruler.js +45 -90
- package/dist/LinearGenomeView/components/Ruler.js.map +1 -0
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +8 -403
- package/dist/LinearGenomeView/components/ScaleBar.js +121 -172
- package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -0
- package/dist/LinearGenomeView/components/SearchBox.js +158 -205
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -0
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +105 -150
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/SequenceDialog.js +219 -272
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackContainer.js +116 -156
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +6 -42
- package/dist/LinearGenomeView/components/TrackLabel.js +115 -134
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +172 -199
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/ZoomControls.js +72 -87
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -0
- package/dist/LinearGenomeView/components/util.d.ts +12 -0
- package/dist/LinearGenomeView/components/util.js +95 -13
- package/dist/LinearGenomeView/components/util.js.map +1 -0
- package/dist/LinearGenomeView/index.d.ts +64 -77
- package/dist/LinearGenomeView/index.js +1035 -1412
- package/dist/LinearGenomeView/index.js.map +1 -0
- package/dist/LinearGenomeView/util.js +76 -83
- package/dist/LinearGenomeView/util.js.map +1 -0
- package/dist/index.d.ts +101 -51
- package/dist/index.js +225 -295
- package/dist/index.js.map +1 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +9 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +68 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
- package/esm/BaseLinearDisplay/components/Block.d.ts +15 -0
- package/esm/BaseLinearDisplay/components/Block.js +46 -0
- package/esm/BaseLinearDisplay/components/Block.js.map +1 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +22 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.js +62 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +113 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js +64 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js.map +1 -0
- package/esm/BaseLinearDisplay/index.d.ts +5 -0
- package/esm/BaseLinearDisplay/index.js +4 -0
- package/esm/BaseLinearDisplay/index.js.map +1 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +232 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +541 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +14 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +225 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
- package/esm/LinearBareDisplay/configSchema.d.ts +2 -0
- package/esm/LinearBareDisplay/configSchema.js +9 -0
- package/esm/LinearBareDisplay/configSchema.js.map +1 -0
- package/esm/LinearBareDisplay/index.d.ts +2 -0
- package/esm/LinearBareDisplay/index.js +3 -0
- package/esm/LinearBareDisplay/index.js.map +1 -0
- package/esm/LinearBareDisplay/model.d.ts +194 -0
- package/esm/LinearBareDisplay/model.js +28 -0
- package/esm/LinearBareDisplay/model.js.map +1 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js +40 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
- package/esm/LinearBasicDisplay/configSchema.d.ts +2 -0
- package/esm/LinearBasicDisplay/configSchema.js +14 -0
- package/esm/LinearBasicDisplay/configSchema.js.map +1 -0
- package/esm/LinearBasicDisplay/index.d.ts +2 -0
- package/esm/LinearBasicDisplay/index.js +3 -0
- package/esm/LinearBasicDisplay/index.js.map +1 -0
- package/esm/LinearBasicDisplay/model.d.ts +218 -0
- package/esm/LinearBasicDisplay/model.js +127 -0
- package/esm/LinearBasicDisplay/model.js.map +1 -0
- package/esm/LinearGenomeView/components/CenterLine.d.ts +8 -0
- package/esm/LinearGenomeView/components/CenterLine.js +40 -0
- package/esm/LinearGenomeView/components/CenterLine.js.map +1 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +52 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/Gridlines.d.ts +8 -0
- package/esm/LinearGenomeView/components/Gridlines.js +71 -0
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/esm/LinearGenomeView/components/Header.d.ts +7 -0
- package/esm/LinearGenomeView/components/Header.js +81 -0
- package/esm/LinearGenomeView/components/Header.js.map +1 -0
- package/esm/LinearGenomeView/components/HelpDialog.d.ts +4 -0
- package/esm/LinearGenomeView/components/HelpDialog.js +58 -0
- package/esm/LinearGenomeView/components/HelpDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/ImportForm.d.ts +7 -0
- package/esm/LinearGenomeView/components/ImportForm.js +141 -0
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +7 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.js +67 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +132 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
- package/esm/LinearGenomeView/components/MiniControls.d.ts +6 -0
- package/esm/LinearGenomeView/components/MiniControls.js +25 -0
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +197 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +148 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.js +287 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +22 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +136 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
- package/esm/LinearGenomeView/components/RubberBand.d.ts +9 -0
- package/esm/LinearGenomeView/components/RubberBand.js +197 -0
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -0
- package/esm/LinearGenomeView/components/Ruler.d.ts +27 -0
- package/esm/LinearGenomeView/components/Ruler.js +50 -0
- package/esm/LinearGenomeView/components/Ruler.js.map +1 -0
- package/esm/LinearGenomeView/components/ScaleBar.d.ts +10 -0
- package/esm/LinearGenomeView/components/ScaleBar.js +112 -0
- package/esm/LinearGenomeView/components/ScaleBar.js.map +1 -0
- package/esm/LinearGenomeView/components/SearchBox.d.ts +8 -0
- package/esm/LinearGenomeView/components/SearchBox.js +94 -0
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +7 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +107 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/SequenceDialog.d.ts +8 -0
- package/esm/LinearGenomeView/components/SequenceDialog.js +147 -0
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackContainer.d.ts +9 -0
- package/esm/LinearGenomeView/components/TrackContainer.js +109 -0
- package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackLabel.d.ts +8 -0
- package/esm/LinearGenomeView/components/TrackLabel.js +89 -0
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -0
- package/{dist/LinearGenomeView/components/VerticalGuides.d.ts → esm/LinearGenomeView/components/TracksContainer.d.ts} +4 -3
- package/esm/LinearGenomeView/components/TracksContainer.js +142 -0
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/ZoomControls.d.ts +7 -0
- package/esm/LinearGenomeView/components/ZoomControls.js +32 -0
- package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -0
- package/esm/LinearGenomeView/components/util.d.ts +14 -0
- package/esm/LinearGenomeView/components/util.js +17 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -0
- package/esm/LinearGenomeView/index.d.ts +275 -0
- package/esm/LinearGenomeView/index.js +978 -0
- package/esm/LinearGenomeView/index.js.map +1 -0
- package/esm/LinearGenomeView/util.d.ts +14 -0
- package/esm/LinearGenomeView/util.js +62 -0
- package/esm/LinearGenomeView/util.js.map +1 -0
- package/esm/index.d.ts +615 -0
- package/esm/index.js +127 -0
- package/esm/index.js.map +1 -0
- package/package.json +22 -15
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +4 -3
- package/src/BaseLinearDisplay/components/Block.tsx +5 -5
- package/src/BaseLinearDisplay/components/LinearBlocks.tsx +4 -4
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +7 -8
- package/src/BaseLinearDisplay/components/Tooltip.tsx +14 -4
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +6 -4
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +1 -1
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +10 -7
- package/src/LinearBasicDisplay/model.ts +21 -15
- package/src/LinearGenomeView/components/CenterLine.tsx +6 -11
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +5 -5
- package/src/LinearGenomeView/components/{VerticalGuides.tsx → Gridlines.tsx} +9 -11
- package/src/LinearGenomeView/components/Header.tsx +13 -18
- package/src/LinearGenomeView/components/HelpDialog.tsx +5 -5
- package/src/LinearGenomeView/components/ImportForm.tsx +24 -37
- package/src/LinearGenomeView/components/LinearGenomeView.test.js +16 -6
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +4 -3
- package/src/LinearGenomeView/components/MiniControls.tsx +29 -40
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +20 -29
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +100 -89
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +13 -44
- package/src/LinearGenomeView/components/RubberBand.tsx +12 -18
- package/src/LinearGenomeView/components/Ruler.tsx +5 -11
- package/src/LinearGenomeView/components/ScaleBar.tsx +23 -27
- package/src/LinearGenomeView/components/SearchBox.tsx +22 -32
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -7
- package/src/LinearGenomeView/components/SequenceDialog.tsx +10 -10
- package/src/LinearGenomeView/components/TrackContainer.tsx +12 -12
- package/src/LinearGenomeView/components/TrackLabel.tsx +21 -31
- package/src/LinearGenomeView/components/TracksContainer.tsx +10 -15
- package/src/LinearGenomeView/components/ZoomControls.tsx +12 -13
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +500 -547
- package/src/LinearGenomeView/components/util.ts +43 -0
- package/src/LinearGenomeView/index.test.ts +14 -36
- package/src/LinearGenomeView/index.tsx +390 -564
- package/src/index.ts +1 -1
- package/dist/LinearBareDisplay/index.test.js +0 -33
- package/dist/LinearGenomeView/components/LinearGenomeView.test.js +0 -234
- package/dist/LinearGenomeView/components/ScaleBar.test.js +0 -180
- package/dist/LinearGenomeView/components/VerticalGuides.js +0 -116
- package/dist/LinearGenomeView/index.test.js +0 -1187
- package/dist/LinearGenomeView/util.test.js +0 -78
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if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
|
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38
|
+
if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
|
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39
|
+
if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
|
|
40
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+
if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
|
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41
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if (t[2]) _.ops.pop();
|
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_.trys.pop(); continue;
|
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}
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+
op = body.call(thisArg, _);
|
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45
|
+
} catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
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+
if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
|
|
47
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+
}
|
|
48
|
+
};
|
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49
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
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|
50
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return (mod && mod.__esModule) ? mod : { "default": mod };
|
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.renderBlockData = void 0;
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54
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var mobx_state_tree_1 = require("mobx-state-tree");
|
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55
|
+
var configuration_1 = require("@jbrowse/core/configuration");
|
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var util_1 = require("@jbrowse/core/util");
|
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var mst_1 = require("@jbrowse/core/util/types/mst");
|
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var types_1 = require("@jbrowse/core/util/types");
|
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+
var tracks_1 = require("@jbrowse/core/util/tracks");
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+
var ServerSideRenderedBlockContent_1 = __importDefault(require("../components/ServerSideRenderedBlockContent"));
|
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35
61
|
// the MST state of a single server-side-rendered block in a display
|
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var blockState =
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var blockState = mobx_state_tree_1.types
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.model('BlockState', {
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key: mobx_state_tree_1.types.string,
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region: mst_1.Region,
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reloadFlag: 0,
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67
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isLeftEndOfDisplayedRegion: false,
|
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isRightEndOfDisplayedRegion: false,
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|
+
})
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70
|
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// NOTE: all this volatile stuff has to be filled in at once, so that it stays consistent
|
|
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|
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.volatile(function () { return ({
|
|
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72
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renderInProgress: undefined,
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73
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filled: false,
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47
74
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reactElement: undefined,
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@@ -51,280 +78,207 @@ var blockState = _mobxStateTree.types.model('BlockState', {
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51
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error: undefined,
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message: undefined,
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80
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maxHeightReached: false,
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ReactComponent:
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renderProps: undefined
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return {
|
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|
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doReload: function doReload() {
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|
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},
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afterAttach: function afterAttach() {
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var display = (0, _util.getContainingDisplay)(self);
|
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(0, _util.makeAbortableReaction)(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
|
|
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|
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{
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|
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|
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name: "".concat(display.id, "/").concat((0, _util.assembleLocString)(self.region), " rendering"),
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delay: display.renderDelay,
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fireImmediately: true
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}, this.setLoading, this.setRendered, this.setError);
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},
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setStatus: function setStatus(message) {
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|
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self.status = message;
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},
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setLoading: function setLoading(abortController) {
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if (renderInProgress !== undefined) {
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if (!renderInProgress.signal.aborted) {
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renderInProgress.abort();
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}
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|
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}
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self.filled = false;
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self.message = undefined;
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self.reactElement = undefined;
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self.features = undefined;
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self.layout = undefined;
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self.error = undefined;
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|
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self.maxHeightReached = false;
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|
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|
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self.renderProps = undefined;
|
|
90
|
-
renderInProgress = abortController;
|
|
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|
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},
|
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|
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setMessage: function setMessage(messageText) {
|
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|
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if (renderInProgress && !renderInProgress.signal.aborted) {
|
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|
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renderInProgress.abort();
|
|
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|
-
}
|
|
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|
-
|
|
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|
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self.filled = false;
|
|
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|
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self.message = messageText;
|
|
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|
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self.reactElement = undefined;
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|
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|
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self.features = undefined;
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|
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self.layout = undefined;
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|
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|
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self.error = undefined;
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self.maxHeightReached = false;
|
|
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|
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self.renderProps = undefined;
|
|
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|
-
renderInProgress = undefined;
|
|
106
|
-
},
|
|
107
|
-
setRendered: function setRendered(props) {
|
|
108
|
-
if (!props) {
|
|
109
|
-
return;
|
|
110
|
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}
|
|
111
|
-
|
|
112
|
-
var reactElement = props.reactElement,
|
|
113
|
-
features = props.features,
|
|
114
|
-
layout = props.layout,
|
|
115
|
-
maxHeightReached = props.maxHeightReached,
|
|
116
|
-
renderProps = props.renderProps;
|
|
117
|
-
self.filled = true;
|
|
118
|
-
self.message = undefined;
|
|
119
|
-
self.reactElement = reactElement;
|
|
120
|
-
self.features = features;
|
|
121
|
-
self.layout = layout;
|
|
122
|
-
self.error = undefined;
|
|
123
|
-
self.maxHeightReached = maxHeightReached;
|
|
124
|
-
self.renderProps = renderProps;
|
|
125
|
-
renderInProgress = undefined;
|
|
126
|
-
},
|
|
127
|
-
setError: function setError(error) {
|
|
128
|
-
console.error(error);
|
|
129
|
-
|
|
130
|
-
if (renderInProgress && !renderInProgress.signal.aborted) {
|
|
131
|
-
renderInProgress.abort();
|
|
132
|
-
} // the rendering failed for some reason
|
|
133
|
-
|
|
134
|
-
|
|
135
|
-
self.filled = false;
|
|
136
|
-
self.message = undefined;
|
|
137
|
-
self.reactElement = undefined;
|
|
138
|
-
self.features = undefined;
|
|
139
|
-
self.layout = undefined;
|
|
140
|
-
self.maxHeightReached = false;
|
|
141
|
-
self.error = error;
|
|
142
|
-
self.renderProps = undefined;
|
|
143
|
-
renderInProgress = undefined;
|
|
144
|
-
|
|
145
|
-
if ((0, _types.isRetryException)(error)) {
|
|
146
|
-
this.reload();
|
|
147
|
-
}
|
|
148
|
-
},
|
|
149
|
-
reload: function reload() {
|
|
150
|
-
self.renderInProgress = undefined;
|
|
151
|
-
self.filled = false;
|
|
152
|
-
self.reactElement = undefined;
|
|
153
|
-
self.features = undefined;
|
|
154
|
-
self.layout = undefined;
|
|
155
|
-
self.error = undefined;
|
|
156
|
-
self.message = undefined;
|
|
157
|
-
self.maxHeightReached = false;
|
|
158
|
-
self.ReactComponent = _ServerSideRenderedBlockContent.default;
|
|
159
|
-
self.renderProps = undefined;
|
|
160
|
-
(0, _mobxStateTree.getParent)(self, 2).reload();
|
|
161
|
-
},
|
|
162
|
-
beforeDestroy: function beforeDestroy() {
|
|
163
|
-
if (renderInProgress && !renderInProgress.signal.aborted) {
|
|
164
|
-
renderInProgress.abort();
|
|
165
|
-
}
|
|
166
|
-
|
|
167
|
-
var display = (0, _util.getContainingDisplay)(self);
|
|
168
|
-
|
|
169
|
-
var _getSession = (0, _util.getSession)(self),
|
|
170
|
-
rpcManager = _getSession.rpcManager;
|
|
171
|
-
|
|
172
|
-
var rendererType = display.rendererType;
|
|
173
|
-
|
|
174
|
-
var _renderBlockData = renderBlockData((0, _mobxStateTree.cast)(self)),
|
|
175
|
-
renderArgs = _renderBlockData.renderArgs; // renderArgs can be undefined if an error occured in this block
|
|
176
|
-
|
|
177
|
-
|
|
178
|
-
if (renderArgs) {
|
|
179
|
-
rendererType.freeResourcesInClient(rpcManager, JSON.parse(JSON.stringify(renderArgs))).catch(function (e) {
|
|
180
|
-
// just console.error if it's something while it's being destroyed
|
|
181
|
-
console.warn('Error while destroying block', e);
|
|
182
|
-
});
|
|
183
|
-
}
|
|
184
|
-
}
|
|
185
|
-
};
|
|
186
|
-
});
|
|
187
|
-
|
|
188
|
-
var _default = blockState;
|
|
189
|
-
exports.default = _default;
|
|
190
|
-
|
|
191
|
-
// calls the render worker to render the block content not using a flow for
|
|
192
|
-
// this, because the flow doesn't work with autorun
|
|
193
|
-
function renderBlockData(self, optDisplay) {
|
|
194
|
-
try {
|
|
195
|
-
var display = optDisplay || (0, _util.getContainingDisplay)(self);
|
|
196
|
-
|
|
197
|
-
var _getSession2 = (0, _util.getSession)(display),
|
|
198
|
-
assemblyManager = _getSession2.assemblyManager,
|
|
199
|
-
rpcManager = _getSession2.rpcManager;
|
|
200
|
-
|
|
201
|
-
var adapterConfig = display.adapterConfig,
|
|
202
|
-
rendererType = display.rendererType,
|
|
203
|
-
error = display.error,
|
|
204
|
-
parentTrack = display.parentTrack;
|
|
205
|
-
var assemblyNames = (0, _tracks.getTrackAssemblyNames)(parentTrack);
|
|
206
|
-
var regionAsm = self.region.assemblyName;
|
|
207
|
-
|
|
208
|
-
if (!assemblyNames.includes(regionAsm) && !assemblyNames.find(function (name) {
|
|
209
|
-
var _assemblyManager$get;
|
|
210
|
-
|
|
211
|
-
return (_assemblyManager$get = assemblyManager.get(name)) === null || _assemblyManager$get === void 0 ? void 0 : _assemblyManager$get.hasName(regionAsm);
|
|
212
|
-
})) {
|
|
213
|
-
throw new Error("region assembly (".concat(regionAsm, ") does not match track assemblies (").concat(assemblyNames, ")"));
|
|
214
|
-
}
|
|
215
|
-
|
|
216
|
-
var renderProps = display.renderProps();
|
|
217
|
-
var config = renderProps.config; // This line is to trigger the mobx reaction when the config changes
|
|
218
|
-
// It won't trigger the reaction if it doesn't think we're accessing it
|
|
219
|
-
|
|
220
|
-
(0, _configuration.readConfObject)(config);
|
|
221
|
-
var sessionId = (0, _tracks.getRpcSessionId)(display);
|
|
222
|
-
var layoutId = (0, _util.getContainingView)(display).id;
|
|
223
|
-
var cannotBeRenderedReason = display.regionCannotBeRendered(self.region);
|
|
81
|
+
ReactComponent: ServerSideRenderedBlockContent_1.default,
|
|
82
|
+
renderProps: undefined,
|
|
83
|
+
}); })
|
|
84
|
+
.actions(function (self) {
|
|
85
|
+
var renderInProgress;
|
|
224
86
|
return {
|
|
225
|
-
|
|
226
|
-
|
|
227
|
-
renderProps: renderProps,
|
|
228
|
-
cannotBeRenderedReason: cannotBeRenderedReason,
|
|
229
|
-
displayError: error,
|
|
230
|
-
renderArgs: {
|
|
231
|
-
statusCallback: function statusCallback(message) {
|
|
232
|
-
if ((0, _mobxStateTree.isAlive)(self)) {
|
|
233
|
-
self.setStatus(message);
|
|
234
|
-
}
|
|
87
|
+
doReload: function () {
|
|
88
|
+
self.reloadFlag = self.reloadFlag + 1;
|
|
235
89
|
},
|
|
236
|
-
|
|
237
|
-
|
|
238
|
-
|
|
239
|
-
|
|
240
|
-
|
|
241
|
-
|
|
242
|
-
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
|
|
246
|
-
|
|
247
|
-
|
|
248
|
-
|
|
249
|
-
|
|
250
|
-
|
|
251
|
-
|
|
252
|
-
|
|
253
|
-
}
|
|
254
|
-
|
|
255
|
-
function renderBlockEffect(_x, _x2, _x3) {
|
|
256
|
-
return _renderBlockEffect.apply(this, arguments);
|
|
257
|
-
}
|
|
258
|
-
|
|
259
|
-
function _renderBlockEffect() {
|
|
260
|
-
_renderBlockEffect = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(props, signal, self) {
|
|
261
|
-
var _ref, rendererType, renderProps, rpcManager, renderArgs, cannotBeRenderedReason, displayError, _yield$rendererType$r, reactElement, features, layout, maxHeightReached;
|
|
262
|
-
|
|
263
|
-
return _regenerator.default.wrap(function _callee$(_context) {
|
|
264
|
-
while (1) {
|
|
265
|
-
switch (_context.prev = _context.next) {
|
|
266
|
-
case 0:
|
|
267
|
-
_ref = props, rendererType = _ref.rendererType, renderProps = _ref.renderProps, rpcManager = _ref.rpcManager, renderArgs = _ref.renderArgs, cannotBeRenderedReason = _ref.cannotBeRenderedReason, displayError = _ref.displayError;
|
|
268
|
-
|
|
269
|
-
if ((0, _mobxStateTree.isAlive)(self)) {
|
|
270
|
-
_context.next = 3;
|
|
271
|
-
break;
|
|
90
|
+
afterAttach: function () {
|
|
91
|
+
var display = (0, util_1.getContainingDisplay)(self);
|
|
92
|
+
(0, util_1.makeAbortableReaction)(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
|
|
93
|
+
{
|
|
94
|
+
name: "".concat(display.id, "/").concat((0, util_1.assembleLocString)(self.region), " rendering"),
|
|
95
|
+
delay: display.renderDelay,
|
|
96
|
+
fireImmediately: true,
|
|
97
|
+
}, this.setLoading, this.setRendered, this.setError);
|
|
98
|
+
},
|
|
99
|
+
setStatus: function (message) {
|
|
100
|
+
self.status = message;
|
|
101
|
+
},
|
|
102
|
+
setLoading: function (abortController) {
|
|
103
|
+
if (renderInProgress !== undefined) {
|
|
104
|
+
if (!renderInProgress.signal.aborted) {
|
|
105
|
+
renderInProgress.abort();
|
|
106
|
+
}
|
|
272
107
|
}
|
|
273
|
-
|
|
274
|
-
|
|
275
|
-
|
|
276
|
-
|
|
277
|
-
|
|
278
|
-
|
|
279
|
-
|
|
108
|
+
self.filled = false;
|
|
109
|
+
self.message = undefined;
|
|
110
|
+
self.reactElement = undefined;
|
|
111
|
+
self.features = undefined;
|
|
112
|
+
self.layout = undefined;
|
|
113
|
+
self.error = undefined;
|
|
114
|
+
self.maxHeightReached = false;
|
|
115
|
+
self.renderProps = undefined;
|
|
116
|
+
renderInProgress = abortController;
|
|
117
|
+
},
|
|
118
|
+
setMessage: function (messageText) {
|
|
119
|
+
if (renderInProgress && !renderInProgress.signal.aborted) {
|
|
120
|
+
renderInProgress.abort();
|
|
121
|
+
}
|
|
122
|
+
self.filled = false;
|
|
123
|
+
self.message = messageText;
|
|
124
|
+
self.reactElement = undefined;
|
|
125
|
+
self.features = undefined;
|
|
126
|
+
self.layout = undefined;
|
|
127
|
+
self.error = undefined;
|
|
128
|
+
self.maxHeightReached = false;
|
|
129
|
+
self.renderProps = undefined;
|
|
130
|
+
renderInProgress = undefined;
|
|
131
|
+
},
|
|
132
|
+
setRendered: function (props) {
|
|
133
|
+
if (!props) {
|
|
134
|
+
return;
|
|
280
135
|
}
|
|
281
|
-
|
|
282
|
-
self.
|
|
283
|
-
|
|
284
|
-
|
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285
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286
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-
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287
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-
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288
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-
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136
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+
var reactElement = props.reactElement, features = props.features, layout = props.layout, maxHeightReached = props.maxHeightReached, renderProps = props.renderProps;
|
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137
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+
self.filled = true;
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138
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+
self.message = undefined;
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139
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+
self.reactElement = reactElement;
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140
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+
self.features = features;
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141
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+
self.layout = layout;
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142
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+
self.error = undefined;
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143
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+
self.maxHeightReached = maxHeightReached;
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144
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self.renderProps = renderProps;
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145
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+
renderInProgress = undefined;
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146
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+
},
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147
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+
setError: function (error) {
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148
|
+
console.error(error);
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149
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+
if (renderInProgress && !renderInProgress.signal.aborted) {
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150
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+
renderInProgress.abort();
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289
151
|
}
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290
|
-
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291
|
-
self.
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292
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-
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293
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-
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294
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-
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295
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-
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296
|
-
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297
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-
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152
|
+
// the rendering failed for some reason
|
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153
|
+
self.filled = false;
|
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154
|
+
self.message = undefined;
|
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155
|
+
self.reactElement = undefined;
|
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156
|
+
self.features = undefined;
|
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157
|
+
self.layout = undefined;
|
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158
|
+
self.maxHeightReached = false;
|
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159
|
+
self.error = error;
|
|
160
|
+
self.renderProps = undefined;
|
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161
|
+
renderInProgress = undefined;
|
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162
|
+
if ((0, types_1.isRetryException)(error)) {
|
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163
|
+
this.reload();
|
|
298
164
|
}
|
|
299
|
-
|
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300
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-
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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-
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315
|
-
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316
|
-
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317
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318
|
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319
|
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|
320
|
-
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|
321
|
-
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|
322
|
-
|
|
323
|
-
|
|
324
|
-
|
|
165
|
+
},
|
|
166
|
+
reload: function () {
|
|
167
|
+
self.renderInProgress = undefined;
|
|
168
|
+
self.filled = false;
|
|
169
|
+
self.reactElement = undefined;
|
|
170
|
+
self.features = undefined;
|
|
171
|
+
self.layout = undefined;
|
|
172
|
+
self.error = undefined;
|
|
173
|
+
self.message = undefined;
|
|
174
|
+
self.maxHeightReached = false;
|
|
175
|
+
self.ReactComponent = ServerSideRenderedBlockContent_1.default;
|
|
176
|
+
self.renderProps = undefined;
|
|
177
|
+
(0, mobx_state_tree_1.getParent)(self, 2).reload();
|
|
178
|
+
},
|
|
179
|
+
beforeDestroy: function () {
|
|
180
|
+
if (renderInProgress && !renderInProgress.signal.aborted) {
|
|
181
|
+
renderInProgress.abort();
|
|
182
|
+
}
|
|
183
|
+
var display = (0, util_1.getContainingDisplay)(self);
|
|
184
|
+
var rpcManager = (0, util_1.getSession)(self).rpcManager;
|
|
185
|
+
var rendererType = display.rendererType;
|
|
186
|
+
var renderArgs = renderBlockData((0, mobx_state_tree_1.cast)(self)).renderArgs;
|
|
187
|
+
// renderArgs can be undefined if an error occured in this block
|
|
188
|
+
if (renderArgs) {
|
|
189
|
+
rendererType
|
|
190
|
+
.freeResourcesInClient(rpcManager, JSON.parse(JSON.stringify(renderArgs)))
|
|
191
|
+
.catch(function (e) {
|
|
192
|
+
// just console.error if it's something while it's being destroyed
|
|
193
|
+
console.warn('Error while destroying block', e);
|
|
194
|
+
});
|
|
195
|
+
}
|
|
196
|
+
},
|
|
197
|
+
};
|
|
198
|
+
});
|
|
199
|
+
exports.default = blockState;
|
|
200
|
+
// calls the render worker to render the block content not using a flow for
|
|
201
|
+
// this, because the flow doesn't work with autorun
|
|
202
|
+
function renderBlockData(self, optDisplay) {
|
|
203
|
+
try {
|
|
204
|
+
var display = optDisplay || (0, util_1.getContainingDisplay)(self);
|
|
205
|
+
var _a = (0, util_1.getSession)(display), assemblyManager_1 = _a.assemblyManager, rpcManager = _a.rpcManager;
|
|
206
|
+
var adapterConfig = display.adapterConfig, rendererType = display.rendererType, error = display.error, parentTrack = display.parentTrack;
|
|
207
|
+
var assemblyNames = (0, tracks_1.getTrackAssemblyNames)(parentTrack);
|
|
208
|
+
var regionAsm_1 = self.region.assemblyName;
|
|
209
|
+
if (!assemblyNames.includes(regionAsm_1) &&
|
|
210
|
+
!assemblyNames.find(function (name) { var _a; return (_a = assemblyManager_1.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm_1); })) {
|
|
211
|
+
throw new Error("region assembly (".concat(regionAsm_1, ") does not match track assemblies (").concat(assemblyNames, ")"));
|
|
325
212
|
}
|
|
326
|
-
|
|
327
|
-
|
|
328
|
-
|
|
329
|
-
|
|
330
|
-
|
|
213
|
+
var renderProps = display.renderProps();
|
|
214
|
+
var config = renderProps.config;
|
|
215
|
+
// This line is to trigger the mobx reaction when the config changes
|
|
216
|
+
// It won't trigger the reaction if it doesn't think we're accessing it
|
|
217
|
+
(0, configuration_1.readConfObject)(config);
|
|
218
|
+
var sessionId = (0, tracks_1.getRpcSessionId)(display);
|
|
219
|
+
var layoutId = (0, util_1.getContainingView)(display).id;
|
|
220
|
+
var cannotBeRenderedReason = display.regionCannotBeRendered(self.region);
|
|
221
|
+
return {
|
|
222
|
+
rendererType: rendererType,
|
|
223
|
+
rpcManager: rpcManager,
|
|
224
|
+
renderProps: renderProps,
|
|
225
|
+
cannotBeRenderedReason: cannotBeRenderedReason,
|
|
226
|
+
displayError: error,
|
|
227
|
+
renderArgs: {
|
|
228
|
+
statusCallback: function (message) {
|
|
229
|
+
if ((0, mobx_state_tree_1.isAlive)(self)) {
|
|
230
|
+
self.setStatus(message);
|
|
231
|
+
}
|
|
232
|
+
},
|
|
233
|
+
assemblyName: self.region.assemblyName,
|
|
234
|
+
regions: [self.region],
|
|
235
|
+
adapterConfig: adapterConfig,
|
|
236
|
+
rendererType: rendererType.name,
|
|
237
|
+
sessionId: sessionId,
|
|
238
|
+
layoutId: layoutId,
|
|
239
|
+
blockKey: self.key,
|
|
240
|
+
reloadFlag: self.reloadFlag,
|
|
241
|
+
timeout: 1000000, // 10000,
|
|
242
|
+
},
|
|
243
|
+
};
|
|
244
|
+
}
|
|
245
|
+
catch (e) {
|
|
246
|
+
return { displayError: e };
|
|
247
|
+
}
|
|
248
|
+
}
|
|
249
|
+
exports.renderBlockData = renderBlockData;
|
|
250
|
+
function renderBlockEffect(props, signal, self) {
|
|
251
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
252
|
+
var _a, rendererType, renderProps, rpcManager, renderArgs, cannotBeRenderedReason, displayError, _b, reactElement, features, layout, maxHeightReached;
|
|
253
|
+
return __generator(this, function (_c) {
|
|
254
|
+
switch (_c.label) {
|
|
255
|
+
case 0:
|
|
256
|
+
_a = props, rendererType = _a.rendererType, renderProps = _a.renderProps, rpcManager = _a.rpcManager, renderArgs = _a.renderArgs, cannotBeRenderedReason = _a.cannotBeRenderedReason, displayError = _a.displayError;
|
|
257
|
+
if (!(0, mobx_state_tree_1.isAlive)(self)) {
|
|
258
|
+
return [2 /*return*/, undefined];
|
|
259
|
+
}
|
|
260
|
+
if (displayError) {
|
|
261
|
+
self.setError(displayError);
|
|
262
|
+
return [2 /*return*/, undefined];
|
|
263
|
+
}
|
|
264
|
+
if (cannotBeRenderedReason) {
|
|
265
|
+
self.setMessage(cannotBeRenderedReason);
|
|
266
|
+
return [2 /*return*/, undefined];
|
|
267
|
+
}
|
|
268
|
+
if (renderProps.notReady) {
|
|
269
|
+
return [2 /*return*/, undefined];
|
|
270
|
+
}
|
|
271
|
+
return [4 /*yield*/, rendererType.renderInClient(rpcManager, __assign(__assign(__assign({}, renderArgs), renderProps), { viewParams: (0, util_1.getViewParams)(self), signal: signal }))];
|
|
272
|
+
case 1:
|
|
273
|
+
_b = _c.sent(), reactElement = _b.reactElement, features = _b.features, layout = _b.layout, maxHeightReached = _b.maxHeightReached;
|
|
274
|
+
return [2 /*return*/, {
|
|
275
|
+
reactElement: reactElement,
|
|
276
|
+
features: features,
|
|
277
|
+
layout: layout,
|
|
278
|
+
maxHeightReached: maxHeightReached,
|
|
279
|
+
}];
|
|
280
|
+
}
|
|
281
|
+
});
|
|
282
|
+
});
|
|
283
|
+
}
|
|
284
|
+
//# sourceMappingURL=serverSideRenderedBlock.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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var _BaseLinearDisplay = require("../BaseLinearDisplay");
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var configuration_1 = require("@jbrowse/core/configuration");
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var BaseLinearDisplay_1 = require("../BaseLinearDisplay");
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function configSchemaFactory(pluginManager) {
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return (0, configuration_1.ConfigurationSchema)('LinearBareDisplay', { renderer: pluginManager.pluggableConfigSchemaType('renderer') }, {
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baseConfiguration: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
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explicitlyTyped: true,
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exports.configSchemaFactory = configSchemaFactory;
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//# sourceMappingURL=configSchema.js.map
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/LinearBareDisplay/configSchema.ts"],"names":[],"mappings":";;;AACA,6DAAiE;AACjE,0DAAoE;AAEpE,SAAgB,mBAAmB,CAAC,aAA4B;IAC9D,OAAO,IAAA,mCAAmB,EACxB,mBAAmB,EACnB,EAAE,QAAQ,EAAE,aAAa,CAAC,yBAAyB,CAAC,UAAU,CAAC,EAAE,EACjE;QACE,iBAAiB,EAAE,iDAA6B;QAChD,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AATD,kDASC"}
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