@jbrowse/plugin-linear-genome-view 1.7.10 → 2.0.1

package/dist/index.js

@@ -1,306 +1,236 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "BaseLinearDisplay", {
-  enumerable: true,
-  get: function get() {
-    return _BaseLinearDisplay.BaseLinearDisplay;
-  }
-});
-Object.defineProperty(exports, "BaseLinearDisplayComponent", {
-  enumerable: true,
-  get: function get() {
-    return _BaseLinearDisplay.BaseLinearDisplayComponent;
-  }
-});
-Object.defineProperty(exports, "RefNameAutocomplete", {
-  enumerable: true,
-  get: function get() {
-    return _LinearGenomeView.RefNameAutocomplete;
-  }
-});
-Object.defineProperty(exports, "SearchBox", {
-  enumerable: true,
-  get: function get() {
-    return _LinearGenomeView.SearchBox;
-  }
-});
-Object.defineProperty(exports, "baseLinearDisplayConfigSchema", {
-  enumerable: true,
-  get: function get() {
-    return _BaseLinearDisplay.baseLinearDisplayConfigSchema;
-  }
-});
-exports.default = void 0;
-Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", {
-  enumerable: true,
-  get: function get() {
-    return _LinearBareDisplay.configSchemaFactory;
-  }
-});
-Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", {
-  enumerable: true,
-  get: function get() {
-    return _LinearBasicDisplay.configSchema;
-  }
-});
-Object.defineProperty(exports, "linearBasicDisplayModelFactory", {
-  enumerable: true,
-  get: function get() {
-    return _LinearBasicDisplay.modelFactory;
-  }
-});
-Object.defineProperty(exports, "renderToSvg", {
-  enumerable: true,
-  get: function get() {
-    return _LinearGenomeView.renderToSvg;
-  }
-});
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = require("react");
-
-var _mobx = require("mobx");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _models = require("@jbrowse/core/pluggableElementTypes/models");
-
-var _TrackType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
-
-var _DisplayType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
-
-var _ViewType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
-
-var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
-
-var _util = require("@jbrowse/core/util");
-
-var _LineStyle = _interopRequireDefault(require("@material-ui/icons/LineStyle"));
-
-var _BaseLinearDisplay = require("./BaseLinearDisplay");
-
-var _LinearBareDisplay = require("./LinearBareDisplay");
-
-var _LinearGenomeView = require("./LinearGenomeView");
-
-var _LinearBasicDisplay = require("./LinearBasicDisplay");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2.default)(LinearGenomeViewPlugin, _Plugin);
-
-  var _super = _createSuper(LinearGenomeViewPlugin);
-
-  function LinearGenomeViewPlugin() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, LinearGenomeViewPlugin);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
     }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'LinearGenomeViewPlugin');
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
-      BaseLinearDisplayComponent: _BaseLinearDisplay.BaseLinearDisplayComponent,
-      BaseLinearDisplay: _BaseLinearDisplay.BaseLinearDisplay,
-      baseLinearDisplayConfigSchema: _BaseLinearDisplay.baseLinearDisplayConfigSchema
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
-    return _this;
-  }
-
-  (0, _createClass2.default)(LinearGenomeViewPlugin, [{
-    key: "install",
-    value: function install(pluginManager) {
-      pluginManager.addTrackType(function () {
-        var configSchema = (0, _configuration.ConfigurationSchema)('FeatureTrack', {}, {
-          baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
-          explicitIdentifier: 'trackId'
-        });
-        return new _TrackType.default({
-          name: 'FeatureTrack',
-          configSchema: configSchema,
-          stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'FeatureTrack', configSchema)
-        });
-      });
-      pluginManager.addTrackType(function () {
-        var configSchema = (0, _configuration.ConfigurationSchema)('BasicTrack', {}, {
-          baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
-          explicitIdentifier: 'trackId'
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
+var react_1 = require("react");
+var mobx_1 = require("mobx");
+var configuration_1 = require("@jbrowse/core/configuration");
+var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
+var TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
+var DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
+var ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
+var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+var util_1 = require("@jbrowse/core/util");
+var LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
+var BaseLinearDisplay_1 = require("./BaseLinearDisplay");
+Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplay; } });
+Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_1.baseLinearDisplayConfigSchema; } });
+var LinearBareDisplay_1 = require("./LinearBareDisplay");
+Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
+var LinearGenomeView_1 = require("./LinearGenomeView");
+Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return LinearGenomeView_1.renderToSvg; } });
+Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
+Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
+var LinearBasicDisplay_1 = require("./LinearBasicDisplay");
+Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
+Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
+var LinearGenomeViewPlugin = /** @class */ (function (_super) {
+    __extends(LinearGenomeViewPlugin, _super);
+    function LinearGenomeViewPlugin() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'LinearGenomeViewPlugin';
+        _this.exports = {
+            BaseLinearDisplayComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
+            BaseLinearDisplay: BaseLinearDisplay_1.BaseLinearDisplay,
+            baseLinearDisplayConfigSchema: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
+        };
+        return _this;
+    }
+    LinearGenomeViewPlugin.prototype.install = function (pluginManager) {
+        var _this = this;
+        pluginManager.addTrackType(function () {
+            var configSchema = (0, configuration_1.ConfigurationSchema)('FeatureTrack', {}, {
+                baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
+                explicitIdentifier: 'trackId',
+            });
+            return new TrackType_1.default({
+                name: 'FeatureTrack',
+                configSchema: configSchema,
+                stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'FeatureTrack', configSchema),
+            });
         });
-        return new _TrackType.default({
-          name: 'BasicTrack',
-          configSchema: configSchema,
-          stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'BasicTrack', configSchema)
+        pluginManager.addTrackType(function () {
+            var configSchema = (0, configuration_1.ConfigurationSchema)('BasicTrack', {}, {
+                baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
+                explicitIdentifier: 'trackId',
+            });
+            return new TrackType_1.default({
+                name: 'BasicTrack',
+                configSchema: configSchema,
+                stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'BasicTrack', configSchema),
+            });
         });
-      });
-      pluginManager.addDisplayType(function () {
-        var configSchema = (0, _LinearBareDisplay.configSchemaFactory)(pluginManager);
-        return new _DisplayType.default({
-          name: 'LinearBareDisplay',
-          configSchema: configSchema,
-          stateModel: (0, _LinearBareDisplay.stateModelFactory)(configSchema),
-          trackType: 'BasicTrack',
-          viewType: 'LinearGenomeView',
-          ReactComponent: _BaseLinearDisplay.BaseLinearDisplayComponent
+        pluginManager.addDisplayType(function () {
+            var configSchema = (0, LinearBareDisplay_1.configSchemaFactory)(pluginManager);
+            return new DisplayType_1.default({
+                name: 'LinearBareDisplay',
+                configSchema: configSchema,
+                stateModel: (0, LinearBareDisplay_1.stateModelFactory)(configSchema),
+                trackType: 'BasicTrack',
+                viewType: 'LinearGenomeView',
+                ReactComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
+            });
         });
-      });
-      pluginManager.addDisplayType(function () {
-        var configSchema = (0, _LinearBasicDisplay.configSchema)(pluginManager);
-        return new _DisplayType.default({
-          name: 'LinearBasicDisplay',
-          configSchema: configSchema,
-          stateModel: (0, _LinearBasicDisplay.modelFactory)(configSchema),
-          trackType: 'FeatureTrack',
-          viewType: 'LinearGenomeView',
-          ReactComponent: _BaseLinearDisplay.BaseLinearDisplayComponent
+        pluginManager.addDisplayType(function () {
+            var configSchema = (0, LinearBasicDisplay_1.configSchema)(pluginManager);
+            return new DisplayType_1.default({
+                name: 'LinearBasicDisplay',
+                configSchema: configSchema,
+                stateModel: (0, LinearBasicDisplay_1.modelFactory)(configSchema),
+                trackType: 'FeatureTrack',
+                viewType: 'LinearGenomeView',
+                ReactComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
+            });
         });
-      });
-      pluginManager.addViewType(function () {
-        return new _ViewType.default({
-          name: 'LinearGenomeView',
-          stateModel: (0, _LinearGenomeView.stateModelFactory)(pluginManager),
-          ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./LinearGenomeView/components/LinearGenomeView'));
+        pluginManager.addViewType(function () {
+            return new ViewType_1.default({
+                name: 'LinearGenomeView',
+                stateModel: (0, LinearGenomeView_1.stateModelFactory)(pluginManager),
+                ReactComponent: (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./LinearGenomeView/components/LinearGenomeView')); }); }),
             });
-          })
         });
-      });
-      pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView',
-      /*#__PURE__*/
-      // @ts-ignore
-      function () {
-        var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_ref) {
-          var session, assembly, loc, _ref$tracks, tracks, assemblyManager, view, asm, idsNotFound;
-
-          return _regenerator.default.wrap(function _callee$(_context) {
-            while (1) {
-              switch (_context.prev = _context.next) {
-                case 0:
-                  session = _ref.session, assembly = _ref.assembly, loc = _ref.loc, _ref$tracks = _ref.tracks, tracks = _ref$tracks === void 0 ? [] : _ref$tracks;
-                  _context.prev = 1;
-                  assemblyManager = session.assemblyManager;
-                  view = session.addView('LinearGenomeView', {});
-                  _context.next = 6;
-                  return (0, _mobx.when)(function () {
-                    return !!view.volatileWidth;
-                  });
-
-                case 6:
-                  if (assembly) {
-                    _context.next = 8;
-                    break;
-                  }
-
-                  throw new Error('No assembly provided when launching linear genome view');
-
-                case 8:
-                  _context.next = 10;
-                  return assemblyManager.waitForAssembly(assembly);
-
-                case 10:
-                  asm = _context.sent;
-
-                  if (asm) {
-                    _context.next = 13;
-                    break;
-                  }
-
-                  throw new Error("Assembly \"".concat(assembly, "\" not found when launching linear genome view"));
-
-                case 13:
-                  view.navToLocString(loc, assembly);
-                  idsNotFound = [];
-                  tracks.forEach(function (track) {
-                    try {
-                      view.showTrack(track);
-                    } catch (e) {
-                      if ("".concat(e).match('Could not resolve identifier')) {
-                        idsNotFound.push(track);
-                      } else {
-                        throw e;
-                      }
+        pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', 
+        // @ts-ignore
+        function (_a) {
+            var session = _a.session, assembly = _a.assembly, loc = _a.loc, _b = _a.tracks, tracks = _b === void 0 ? [] : _b;
+            return __awaiter(_this, void 0, void 0, function () {
+                var assemblyManager, view_1, asm, idsNotFound_1, e_1;
+                return __generator(this, function (_c) {
+                    switch (_c.label) {
+                        case 0:
+                            _c.trys.push([0, 3, , 4]);
+                            assemblyManager = session.assemblyManager;
+                            view_1 = session.addView('LinearGenomeView', {});
+                            return [4 /*yield*/, (0, mobx_1.when)(function () { return !!view_1.volatileWidth; })];
+                        case 1:
+                            _c.sent();
+                            if (!assembly) {
+                                throw new Error('No assembly provided when launching linear genome view');
+                            }
+                            return [4 /*yield*/, assemblyManager.waitForAssembly(assembly)];
+                        case 2:
+                            asm = _c.sent();
+                            if (!asm) {
+                                throw new Error("Assembly \"".concat(assembly, "\" not found when launching linear genome view"));
+                            }
+                            view_1.navToLocString(loc, assembly);
+                            idsNotFound_1 = [];
+                            tracks.forEach(function (track) {
+                                try {
+                                    view_1.showTrack(track);
+                                }
+                                catch (e) {
+                                    if ("".concat(e).match('Could not resolve identifier')) {
+                                        idsNotFound_1.push(track);
+                                    }
+                                    else {
+                                        throw e;
+                                    }
+                                }
+                            });
+                            if (idsNotFound_1.length) {
+                                throw new Error("Could not resolve identifiers: ".concat(idsNotFound_1.join(',')));
+                            }
+                            return [3 /*break*/, 4];
+                        case 3:
+                            e_1 = _c.sent();
+                            session.notify("".concat(e_1), 'error');
+                            throw e_1;
+                        case 4: return [2 /*return*/];
                     }
-                  });
-
-                  if (!idsNotFound.length) {
-                    _context.next = 18;
-                    break;
-                  }
-
-                  throw new Error("Could not resolve identifiers: ".concat(idsNotFound.join(',')));
-
-                case 18:
-                  _context.next = 24;
-                  break;
-
-                case 20:
-                  _context.prev = 20;
-                  _context.t0 = _context["catch"](1);
-                  session.notify("".concat(_context.t0), 'error');
-                  throw _context.t0;
-
-                case 24:
-                case "end":
-                  return _context.stop();
-              }
-            }
-          }, _callee, null, [[1, 20]]);
-        }));
-
-        return function (_x) {
-          return _ref2.apply(this, arguments);
-        };
-      }());
-    }
-  }, {
-    key: "configure",
-    value: function configure(pluginManager) {
-      if ((0, _util.isAbstractMenuManager)(pluginManager.rootModel)) {
-        pluginManager.rootModel.appendToSubMenu(['Add'], {
-          label: 'Linear genome view',
-          icon: _LineStyle.default,
-          onClick: function onClick(session) {
-            session.addView('LinearGenomeView', {});
-          }
+                });
+            });
         });
-      }
-    }
-  }]);
-  return LinearGenomeViewPlugin;
-}(_Plugin2.default);
-
-exports.default = LinearGenomeViewPlugin;
+    };
+    LinearGenomeViewPlugin.prototype.configure = function (pluginManager) {
+        if ((0, util_1.isAbstractMenuManager)(pluginManager.rootModel)) {
+            pluginManager.rootModel.appendToSubMenu(['Add'], {
+                label: 'Linear genome view',
+                icon: LineStyle_1.default,
+                onClick: function (session) {
+                    session.addView('LinearGenomeView', {});
+                },
+            });
+        }
+    };
+    return LinearGenomeViewPlugin;
+}(Plugin_1.default));
+exports.default = LinearGenomeViewPlugin;
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import Tooltip from './Tooltip';
+import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
+declare const BaseLinearDisplay: (props: {
+    model: BaseLinearDisplayModel;
+    children?: React.ReactNode;
+}) => JSX.Element;
+export default BaseLinearDisplay;
+export { Tooltip };

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -0,0 +1,68 @@
+import React, { useState, useRef } from 'react';
+import { observer } from 'mobx-react';
+import { useTheme } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { getConf } from '@jbrowse/core/configuration';
+import { Menu } from '@jbrowse/core/ui';
+// locals
+import Tooltip from './Tooltip';
+import LinearBlocks from './LinearBlocks';
+const useStyles = makeStyles()({
+    display: {
+        position: 'relative',
+        whiteSpace: 'nowrap',
+        textAlign: 'left',
+        width: '100%',
+        minHeight: '100%',
+    },
+});
+const BaseLinearDisplay = observer((props) => {
+    const { classes } = useStyles();
+    const theme = useTheme();
+    const ref = useRef(null);
+    const [clientRect, setClientRect] = useState();
+    const [offsetMouseCoord, setOffsetMouseCoord] = useState([0, 0]);
+    const [clientMouseCoord, setClientMouseCoord] = useState([0, 0]);
+    const [contextCoord, setContextCoord] = useState();
+    const { model, children } = props;
+    const { TooltipComponent, DisplayMessageComponent, contextMenuItems, height, setContextMenuFeature, } = model;
+    return (React.createElement("div", { ref: ref, "data-testid": `display-${getConf(model, 'displayId')}`, className: classes.display, onContextMenu: event => {
+            event.preventDefault();
+            if (contextCoord) {
+                // There's already a context menu open, so close it
+                setContextCoord(undefined);
+            }
+            else if (ref.current) {
+                setContextCoord([event.clientX, event.clientY]);
+            }
+        }, onMouseMove: event => {
+            if (!ref.current) {
+                return;
+            }
+            const rect = ref.current.getBoundingClientRect();
+            const { left, top } = rect;
+            setOffsetMouseCoord([event.clientX - left, event.clientY - top]);
+            setClientMouseCoord([event.clientX, event.clientY]);
+            setClientRect(rect);
+        } },
+        DisplayMessageComponent ? (React.createElement(DisplayMessageComponent, { model: model })) : (React.createElement(LinearBlocks, { ...props })),
+        children,
+        React.createElement(TooltipComponent, { model: model, height: height, offsetMouseCoord: offsetMouseCoord, clientMouseCoord: clientMouseCoord, clientRect: clientRect, mouseCoord: offsetMouseCoord }),
+        React.createElement(Menu, { open: Boolean(contextCoord) && Boolean(contextMenuItems().length), onMenuItemClick: (_, callback) => {
+                callback();
+                setContextCoord(undefined);
+            }, onClose: () => {
+                setContextCoord(undefined);
+                setContextMenuFeature(undefined);
+            }, TransitionProps: {
+                onExit: () => {
+                    setContextCoord(undefined);
+                    setContextMenuFeature(undefined);
+                },
+            }, anchorReference: "anchorPosition", anchorPosition: contextCoord
+                ? { top: contextCoord[1], left: contextCoord[0] }
+                : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems(), "data-testid": "base_linear_display_context_menu" })));
+});
+export default BaseLinearDisplay;
+export { Tooltip };
+//# sourceMappingURL=BaseLinearDisplay.js.map

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map

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