@jbrowse/plugin-data-management 2.0.0 → 2.1.2

package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/Node.d.ts

@@ -0,0 +1,29 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel, TreeNode } from '../model';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+export interface InfoArgs {
+    target: HTMLElement;
+    id: string;
+    conf: AnyConfigurationModel;
+}
+export default function Node(props: {
+    data: {
+        nestingLevel: number;
+        checked: boolean;
+        conf: AnyConfigurationModel;
+        drawerPosition: unknown;
+        id: string;
+        isLeaf: boolean;
+        name: string;
+        onChange: Function;
+        toggleCollapse: (arg: string) => void;
+        tree: TreeNode;
+        selected: boolean;
+        model: HierarchicalTrackSelectorModel;
+    };
+    isOpen: boolean;
+    style?: {
+        height: number;
+    };
+    setOpen: (arg: boolean) => void;
+}): JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/Node.js

@@ -0,0 +1,173 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+// icons
+const ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
+const ArrowRight_1 = __importDefault(require("@mui/icons-material/ArrowRight"));
+const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
+const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
+const util_1 = require("@jbrowse/core/util");
+const configuration_1 = require("@jbrowse/core/configuration");
+const util_2 = require("./util");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    compactCheckbox: {
+        padding: 0,
+    },
+    checkboxLabel: {
+        marginRight: 0,
+        '&:hover': {
+            backgroundColor: '#eee',
+        },
+    },
+    contrastColor: {
+        color: theme.palette.secondary.contrastText,
+    },
+    // this accordionBase element's small padding is used to give a margin to
+    // accordionColor it a "margin" because the virtualized elements can't really
+    // use margin in a conventional way (it doesn't affect layout)
+    accordionBase: {
+        display: 'flex',
+    },
+    accordionCard: {
+        padding: 3,
+        cursor: 'pointer',
+        display: 'flex',
+    },
+    nestingLevelMarker: {
+        position: 'absolute',
+        borderLeft: '1.5px solid #555',
+    },
+    // accordionColor set's display:flex so that the child accordionText use
+    // vertically centered text
+    accordionColor: {
+        background: theme.palette.tertiary.main,
+        color: theme.palette.tertiary.contrastText,
+        width: '100%',
+        display: 'flex',
+        paddingLeft: 5,
+    },
+    // margin:auto 0 to center text vertically
+    accordionText: {
+        margin: 'auto 0',
+    },
+}));
+function treeToMap(tree, map = new Map()) {
+    if (tree.id && tree.children.length) {
+        map.set(tree.id, tree);
+    }
+    for (let i = 0; i < tree.children.length; i++) {
+        const node = tree.children[i];
+        treeToMap(node, map);
+    }
+    return map;
+}
+function isUnsupported(name = '') {
+    return name.endsWith('(Unsupported)') || name.endsWith('(Unknown)');
+}
+// An individual node in the track selector. Note: manually sets cursor:
+// pointer improves usability for what can be clicked
+function Node(props) {
+    var _a, _b;
+    const { data, isOpen, style, setOpen } = props;
+    const { checked, conf, drawerPosition, id, isLeaf, model, name, nestingLevel, onChange, selected, toggleCollapse, tree, } = data;
+    const { classes } = useStyles();
+    const width = 10;
+    const [menuEl, setMenuEl] = (0, react_1.useState)(null);
+    const [info, setInfo] = (0, react_1.useState)();
+    const marginLeft = nestingLevel * width + (isLeaf ? width : 0);
+    const description = (conf && (0, configuration_1.readConfObject)(conf, ['description'])) || '';
+    return (react_1.default.createElement("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined },
+        new Array(nestingLevel).fill(0).map((_, idx) => (react_1.default.createElement("div", { key: `mark-${idx}`, style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }))),
+        react_1.default.createElement("div", { className: !isLeaf ? classes.accordionCard : undefined, onClick: () => {
+                if (!menuEl) {
+                    toggleCollapse(id);
+                    setOpen(!isOpen);
+                }
+            }, style: {
+                marginLeft,
+                whiteSpace: 'nowrap',
+                width: '100%',
+            } },
+            react_1.default.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined },
+                !isLeaf ? (react_1.default.createElement("div", { className: classes.accordionText },
+                    react_1.default.createElement(material_1.Typography, null,
+                        isOpen ? react_1.default.createElement(ArrowDropDown_1.default, null) : react_1.default.createElement(ArrowRight_1.default, null),
+                        name,
+                        react_1.default.createElement(material_1.IconButton, { onClick: event => {
+                                setMenuEl(event.currentTarget);
+                                event.stopPropagation();
+                            }, className: classes.contrastColor },
+                            react_1.default.createElement(MoreHoriz_1.default, null))))) : (react_1.default.createElement(react_1.default.Fragment, null,
+                    react_1.default.createElement(material_1.Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left' },
+                        react_1.default.createElement(material_1.FormControlLabel, { className: classes.checkboxLabel, control: react_1.default.createElement(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => onChange(id), disabled: isUnsupported(name), inputProps: {
+                                    // @ts-ignore
+                                    'data-testid': `htsTrackEntry-${id}`,
+                                } }), label: react_1.default.createElement("div", { style: {
+                                    background: selected ? '#cccc' : undefined,
+                                    padding: 1,
+                                } }, name) })),
+                    react_1.default.createElement(material_1.IconButton, { onClick: e => setInfo({ target: e.currentTarget, id, conf }), style: { padding: 0 }, color: "secondary", "data-testid": `htsTrackEntryMenu-${id}` },
+                        react_1.default.createElement(MoreHoriz_1.default, null)))),
+                menuEl ? (react_1.default.createElement(Menu_1.default, { anchorEl: menuEl, menuItems: [
+                        {
+                            label: 'Add to selection',
+                            onClick: () => model.addToSelection((0, util_2.getAllChildren)(treeToMap(tree).get(id))),
+                        },
+                        {
+                            label: 'Remove from selection',
+                            onClick: () => model.removeFromSelection((0, util_2.getAllChildren)(treeToMap(tree).get(id))),
+                        },
+                    ], onMenuItemClick: (_event, callback) => {
+                        callback();
+                        setMenuEl(null);
+                    }, open: Boolean(menuEl), onClose: () => setMenuEl(null) })) : null,
+                info ? (react_1.default.createElement(Menu_1.default, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: [
+                        ...(((_b = (_a = (0, util_1.getSession)(model)).getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(_a, info.conf)) ||
+                            []),
+                        {
+                            label: 'Add to selection',
+                            onClick: () => model.addToSelection([info.conf]),
+                        },
+                        ...(selected
+                            ? [
+                                {
+                                    label: 'Remove from selection',
+                                    onClick: () => model.removeFromSelection([info.conf]),
+                                },
+                            ]
+                            : []),
+                    ], onMenuItemClick: (_event, callback) => {
+                        callback();
+                        setInfo(undefined);
+                    }, open: Boolean(info), onClose: () => setInfo(undefined) })) : null))));
+}
+exports.default = Node;
+//# sourceMappingURL=Node.js.map

package/dist/HierarchicalTrackSelectorWidget/components/Node.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js

@@ -3,13 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var Close_1 = __importDefault(require("@mui/icons-material/Close"));
-var mobx_react_1 = require("mobx-react");
-var configuration_1 = require("@jbrowse/core/configuration");
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const mobx_react_1 = require("mobx-react");
+const configuration_1 = require("@jbrowse/core/configuration");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     closeButton: {
         position: 'absolute',
         right: theme.spacing(1),
@@ -20,13 +20,12 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
         width: 500,
         margin: theme.spacing(4),
     },
-}); });
-function ToggleConnectionDialog(_a) {
-    var session = _a.session, handleClose = _a.handleClose, assemblyName = _a.assemblyName, breakConnection = _a.breakConnection;
-    var classes = useStyles().classes;
-    var connections = session.connections, _b = session.connectionInstances, instances = _b === void 0 ? [] : _b;
-    var assemblySpecificConnections = connections.filter(function (c) {
-        var configAssemblyNames = (0, configuration_1.readConfObject)(c, 'assemblyNames');
+}));
+function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConnection, }) {
+    const { classes } = useStyles();
+    const { connections, connectionInstances: instances = [] } = session;
+    const assemblySpecificConnections = connections.filter(c => {
+        const configAssemblyNames = (0, configuration_1.readConfObject)(c, 'assemblyNames');
         if (configAssemblyNames.length === 0) {
             return true;
         }
@@ -35,15 +34,15 @@ function ToggleConnectionDialog(_a) {
     return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
         react_1.default.createElement(material_1.DialogTitle, null,
             "Turn on/off connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: function () { return handleClose(); } },
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
                 react_1.default.createElement(Close_1.default, null))),
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Use the checkbox to turn on/off connections"),
             react_1.default.createElement("div", { className: classes.connectionContainer },
-                assemblySpecificConnections.map(function (conf) {
-                    var name = (0, configuration_1.readConfObject)(conf, 'name');
-                    var found = instances.find(function (conn) { return name === conn.name; });
-                    return (react_1.default.createElement(material_1.FormControlLabel, { key: conf.connectionId, control: react_1.default.createElement(material_1.Checkbox, { checked: !!found, onChange: function () {
+                assemblySpecificConnections.map(conf => {
+                    const name = (0, configuration_1.readConfObject)(conf, 'name');
+                    const found = instances.find(conn => name === conn.name);
+                    return (react_1.default.createElement(material_1.FormControlLabel, { key: conf.connectionId, control: react_1.default.createElement(material_1.Checkbox, { checked: !!found, onChange: () => {
                                 var _a;
                                 if (found) {
                                     breakConnection(conf);
@@ -57,7 +56,7 @@ function ToggleConnectionDialog(_a) {
                     "No connections found for ",
                     assemblyName)) : null)),
         react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { onClick: function () { return handleClose(); }, variant: "contained", color: "primary" }, "Close"))));
+            react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
 }
 exports.default = (0, mobx_react_1.observer)(ToggleConnectionDialog);
 //# sourceMappingURL=ToggleConnectionsDialog.js.map

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAUsB;AACtB,uCAA0C;AAC1C,sEAAiD;AACjD,2CAAqC;AACrC,+DAGoC;AAGpC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,YAAY,EACZ,eAAe,GAMhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,MAAM,2BAA2B,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;QACzD,MAAM,mBAAmB,GAAG,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAA;QAC9D,IAAI,mBAAmB,CAAC,MAAM,KAAK,CAAC,EAAE;YACpC,OAAO,IAAI,CAAA;SACZ;QACD,OAAO,mBAAmB,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;IACnD,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,2BAA2B,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtC,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,IAAI,GACX,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,2BAA2B,CAAC,MAAM,CAAC,CAAC,CAAC,CACrC,8BAAC,qBAAU;;oBAA2B,YAAY,CAAc,CACjE,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts

@@ -0,0 +1,3 @@
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { TreeNode } from '../model';
+export declare function getAllChildren(subtree?: TreeNode): AnyConfigurationModel[];

package/dist/HierarchicalTrackSelectorWidget/components/util.js

@@ -0,0 +1,9 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getAllChildren = void 0;
+function getAllChildren(subtree) {
+    // @ts-ignore
+    return ((subtree === null || subtree === void 0 ? void 0 : subtree.children.map(t => t.children.length ? getAllChildren(t) : t.conf)) || []).flat(Infinity);
+}
+exports.getAllChildren = getAllChildren;
+//# sourceMappingURL=util.js.map

package/dist/HierarchicalTrackSelectorWidget/components/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/util.ts"],"names":[],"mappings":";;;AAGA,SAAgB,cAAc,CAAC,OAAkB;IAC/C,aAAa;IACb,OAAO,CACL,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACxB,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC,IAA8B,CAC1E,KAAI,EAAE,CACR,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAA;AAClB,CAAC;AAPD,wCAOC"}

package/dist/HierarchicalTrackSelectorWidget/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/HierarchicalTrackSelectorWidget/configSchema.js

@@ -0,0 +1,6 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema = (0, configuration_1.ConfigurationSchema)('HierarchicalTrackSelectorWidget', {});
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/HierarchicalTrackSelectorWidget/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EAAC,iCAAiC,EAAE,EAAE,CAAC,CAAA;AAC/E,kBAAe,YAAY,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/index.d.ts

@@ -1,2 +1,4 @@
-export { default as stateModelFactory } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import stateModelFactory, { HierarchicalTrackSelectorModel } from './model';
+import configSchema from './configSchema';
+export { stateModelFactory, configSchema };
+export type { HierarchicalTrackSelectorModel };

package/dist/HierarchicalTrackSelectorWidget/index.js

@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = exports.stateModelFactory = void 0;
-var configuration_1 = require("@jbrowse/core/configuration");
-var model_1 = require("./model");
-Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-exports.configSchema = (0, configuration_1.ConfigurationSchema)('HierarchicalTrackSelectorWidget', {});
+const model_1 = __importDefault(require("./model"));
+exports.stateModelFactory = model_1.default;
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.configSchema = configSchema_1.default;
 //# sourceMappingURL=index.js.map

package/dist/HierarchicalTrackSelectorWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,6DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,iCAAiC,EACjC,EAAE,CACH,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,oDAA2E;AAGlE,4BAHF,eAAiB,CAGE;AAF1B,kEAAyC;AAEb,uBAFrB,sBAAY,CAEqB"}

package/dist/HierarchicalTrackSelectorWidget/model.d.ts

@@ -1,7 +1,6 @@
 import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { AbstractView } from 'react';
 export declare type TreeNode = {
     name: string;
     id: string;
@@ -20,7 +19,16 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
     view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
 }, {
-    setView(view: AbstractView): void;
+    selection: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+} & {
+    addToSelection(elt: AnyConfigurationModel[]): void;
+    removeFromSelection(elt: AnyConfigurationModel[]): void;
+    clearSelection(): void;
+    setView(view: unknown): void;
     toggleCategory(pathName: string): void;
     clearFilterText(): void;
     setFilterText(newText: string): void;