@jbrowse/plugin-data-management 2.0.0 → 2.1.2

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -1,15 +1,4 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -33,240 +22,77 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
-var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
-    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
-        if (ar || !(i in from)) {
-            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
-            ar[i] = from[i];
-        }
-    }
-    return to.concat(ar || Array.prototype.slice.call(from));
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
 // icons
-var Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
-var Add_1 = __importDefault(require("@mui/icons-material/Add"));
-var ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
-var ArrowRight_1 = __importDefault(require("@mui/icons-material/ArrowRight"));
-var Menu_1 = __importDefault(require("@mui/icons-material/Menu"));
-var MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
-var Icons_1 = require("@jbrowse/core/ui/Icons");
+const Add_1 = __importDefault(require("@mui/icons-material/Add"));
 // other
-var react_virtualized_auto_sizer_1 = __importDefault(require("react-virtualized-auto-sizer"));
-var Menu_2 = __importDefault(require("@jbrowse/core/ui/Menu"));
-var util_1 = require("@jbrowse/core/util");
-var configuration_1 = require("@jbrowse/core/configuration");
-var mobx_react_1 = require("mobx-react");
-var react_vtree_1 = require("react-vtree");
-// lazy components
-var CloseConnectionDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./CloseConnectionDialog')); }); });
-var DeleteConnectionDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./DeleteConnectionDialog')); }); });
-var ManageConnectionsDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./ManageConnectionsDialog')); }); });
-var ToggleConnectionsDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./ToggleConnectionsDialog')); }); });
-var useStyles = (0, mui_1.makeStyles)()(function (theme) {
-    var _a, _b;
-    return ({
-        searchBox: {
-            margin: theme.spacing(2),
-        },
-        menuIcon: {
-            marginRight: theme.spacing(1),
-            marginBottom: 0,
-        },
-        fab: {
-            position: 'absolute',
-            bottom: theme.spacing(6),
-            right: theme.spacing(6),
-        },
-        compactCheckbox: {
-            padding: 0,
-        },
-        checkboxLabel: {
-            marginRight: 0,
-            '&:hover': {
-                backgroundColor: '#eee',
-            },
-        },
-        // this accordionBase element's small padding is used to give a margin to
-        // accordionColor it a "margin" because the virtualized elements can't really
-        // use margin in a conventional way (it doesn't affect layout)
-        accordionBase: {
-            display: 'flex',
-        },
-        accordionCard: {
-            padding: 3,
-            cursor: 'pointer',
-            display: 'flex',
-        },
-        nestingLevelMarker: {
-            position: 'absolute',
-            borderLeft: '1.5px solid #555',
-        },
-        // accordionColor set's display:flex so that the child accordionText use
-        // vertically centered text
-        accordionColor: {
-            // @ts-ignore
-            background: (_a = theme.palette.tertiary) === null || _a === void 0 ? void 0 : _a.main,
-            // @ts-ignore
-            color: (_b = theme.palette.tertiary) === null || _b === void 0 ? void 0 : _b.contrastText,
-            width: '100%',
-            display: 'flex',
-            paddingLeft: 5,
-        },
-        // margin:auto 0 to center text vertically
-        accordionText: {
-            margin: 'auto 0',
-        },
-    });
-});
-// An individual node in the track selector. Note: manually sets cursor:
-// pointer improves usability for what can be clicked
-function Node(props) {
-    var data = props.data, isOpen = props.isOpen, style = props.style, setOpen = props.setOpen;
-    var isLeaf = data.isLeaf, nestingLevel = data.nestingLevel, checked = data.checked, id = data.id, name = data.name, onChange = data.onChange, toggleCollapse = data.toggleCollapse, conf = data.conf, onMoreInfo = data.onMoreInfo, drawerPosition = data.drawerPosition;
-    var classes = useStyles().classes;
-    var width = 10;
-    var marginLeft = nestingLevel * width + (isLeaf ? width : 0);
-    var unsupported = (name === null || name === void 0 ? void 0 : name.endsWith('(Unsupported)')) || (name === null || name === void 0 ? void 0 : name.endsWith('(Unknown)'));
-    var description = (conf && (0, configuration_1.readConfObject)(conf, ['description'])) || '';
-    return (react_1.default.createElement("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined },
-        new Array(nestingLevel).fill(0).map(function (_, idx) { return (react_1.default.createElement("div", { key: "mark-".concat(idx), style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker })); }),
-        react_1.default.createElement("div", { className: !isLeaf ? classes.accordionCard : undefined, onClick: function () {
-                toggleCollapse(id);
-                setOpen(!isOpen);
-            }, style: {
-                marginLeft: marginLeft,
-                whiteSpace: 'nowrap',
-                width: '100%',
-            } },
-            react_1.default.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (react_1.default.createElement("div", { className: classes.accordionText },
-                react_1.default.createElement(material_1.Typography, null,
-                    isOpen ? react_1.default.createElement(ArrowDropDown_1.default, null) : react_1.default.createElement(ArrowRight_1.default, null),
-                    name))) : (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.Tooltip, { title: description, placement: drawerPosition === 'left' ? 'right' : 'left' },
-                    react_1.default.createElement(material_1.FormControlLabel, { className: classes.checkboxLabel, control: react_1.default.createElement(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: function () { return onChange(id); }, color: "primary", disabled: unsupported, inputProps: {
-                                // @ts-ignore
-                                'data-testid': "htsTrackEntry-".concat(id),
-                            } }), label: name })),
-                react_1.default.createElement(material_1.IconButton, { onClick: function (e) { return onMoreInfo({ target: e.currentTarget, id: id, conf: conf }); }, style: { padding: 0 }, color: "secondary", "data-testid": "htsTrackEntryMenu-".concat(id) },
-                    react_1.default.createElement(MoreHoriz_1.default, null))))))));
-}
-function getNodeData(node, nestingLevel, extra) {
-    var isLeaf = !!node.conf;
+const react_virtualized_auto_sizer_1 = __importDefault(require("react-virtualized-auto-sizer"));
+const util_1 = require("@jbrowse/core/util");
+const mobx_react_1 = require("mobx-react");
+const react_vtree_1 = require("react-vtree");
+const Header_1 = __importDefault(require("./Header"));
+const Node_1 = __importDefault(require("./Node"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    fab: {
+        position: 'absolute',
+        bottom: theme.spacing(6),
+        right: theme.spacing(6),
+    },
+}));
+function getNodeData(node, nestingLevel, extra, selection) {
+    const isLeaf = !!node.conf;
+    const selected = !!selection[node.id];
     return {
-        data: __assign(__assign({ defaultHeight: isLeaf ? 22 : 40, isLeaf: isLeaf, isOpenByDefault: true, nestingLevel: nestingLevel }, node), extra),
-        nestingLevel: nestingLevel,
-        node: node,
+        data: {
+            defaultHeight: isLeaf ? 22 : 40,
+            isLeaf,
+            isOpenByDefault: true,
+            nestingLevel,
+            selected,
+            ...node,
+            ...extra,
+        },
+        nestingLevel,
+        node,
     };
 }
 // this is the main tree component for the hierarchical track selector in note:
 // in jbrowse-web the toolbar is position="sticky" which means the autosizer
 // includes the height of the toolbar, so we subtract the given offsets
-var HierarchicalTree = (0, mobx_react_1.observer)(function (_a) {
-    var _b;
-    var height = _a.height, tree = _a.tree, model = _a.model;
-    var filterText = model.filterText, view = model.view;
-    var treeRef = (0, react_1.useRef)(null);
-    var _c = __read((0, react_1.useState)(), 2), info = _c[0], setMoreInfo = _c[1];
-    var session = (0, util_1.getSession)(model);
-    var drawerPosition = session.drawerPosition;
-    var extra = (0, react_1.useMemo)(function () { return ({
-        onChange: function (trackId) { return view.toggleTrack(trackId); },
-        toggleCollapse: function (pathName) { return model.toggleCategory(pathName); },
-        onMoreInfo: setMoreInfo,
-        drawerPosition: drawerPosition,
-    }); }, [view, model, drawerPosition]);
-    var treeWalker = (0, react_1.useCallback)(function treeWalker() {
-        var i, r, parentMeta, i, curr;
-        return __generator(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    i = 0;
-                    _a.label = 1;
-                case 1:
-                    if (!(i < tree.children.length)) return [3 /*break*/, 4];
-                    r = tree.children[i];
-                    return [4 /*yield*/, getNodeData(r, 0, extra)];
-                case 2:
-                    _a.sent();
-                    _a.label = 3;
-                case 3:
-                    i++;
-                    return [3 /*break*/, 1];
-                case 4:
-                    if (!true) return [3 /*break*/, 10];
-                    return [4 /*yield*/];
-                case 5:
-                    parentMeta = _a.sent();
-                    i = 0;
-                    _a.label = 6;
-                case 6:
-                    if (!(i < parentMeta.node.children.length)) return [3 /*break*/, 9];
-                    curr = parentMeta.node.children[i];
-                    return [4 /*yield*/, getNodeData(curr, parentMeta.nestingLevel + 1, extra)];
-                case 7:
-                    _a.sent();
-                    _a.label = 8;
-                case 8:
-                    i++;
-                    return [3 /*break*/, 6];
-                case 9: return [3 /*break*/, 4];
-                case 10: return [2 /*return*/];
+const HierarchicalTree = (0, mobx_react_1.observer)(({ height, tree, model, }) => {
+    const { filterText, selection, view } = model;
+    const treeRef = (0, react_1.useRef)(null);
+    const session = (0, util_1.getSession)(model);
+    const { drawerPosition } = session;
+    const obj = (0, react_1.useMemo)(() => Object.fromEntries(selection.map(s => [s.trackId, s])), [selection]);
+    const extra = (0, react_1.useMemo)(() => ({
+        onChange: (trackId) => view.toggleTrack(trackId),
+        toggleCollapse: (pathName) => model.toggleCategory(pathName),
+        tree,
+        model,
+        drawerPosition,
+    }), [view, model, drawerPosition, tree]);
+    const treeWalker = (0, react_1.useCallback)(function* treeWalker() {
+        for (let i = 0; i < tree.children.length; i++) {
+            const r = tree.children[i];
+            yield getNodeData(r, 0, extra, obj);
+        }
+        while (true) {
+            // @ts-ignore
+            const parentMeta = yield;
+            for (let i = 0; i < parentMeta.node.children.length; i++) {
+                const curr = parentMeta.node.children[i];
+                yield getNodeData(curr, parentMeta.nestingLevel + 1, extra, obj);
             }
-        });
-    }, [tree, extra]);
-    var conf = info === null || info === void 0 ? void 0 : info.conf;
-    var menuItems = (conf && ((_b = session.getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(session, conf))) || [];
-    (0, react_1.useEffect)(function () {
+        }
+    }, [tree, extra, obj]);
+    (0, react_1.useEffect)(() => {
         // @ts-ignore
         treeRef.current.recomputeTree({
             refreshNodes: true,
@@ -274,48 +100,40 @@ var HierarchicalTree = (0, mobx_react_1.observer)(function (_a) {
         });
     }, [tree, filterText]);
     return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(react_vtree_1.VariableSizeTree, { ref: treeRef, treeWalker: treeWalker, height: height }, Node),
-        react_1.default.createElement(Menu_2.default, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: menuItems, onMenuItemClick: function (_event, callback) {
-                callback();
-                setMoreInfo(undefined);
-            }, open: Boolean(info), onClose: function () { return setMoreInfo(undefined); } })));
+        react_1.default.createElement(react_vtree_1.VariableSizeTree, { ref: treeRef, treeWalker: treeWalker, height: height }, Node_1.default)));
 });
 // Don't use autosizer in jest and instead hardcode a height, otherwise fails
 // jest tests
-var AutoSizedHierarchicalTree = function (_a) {
-    var tree = _a.tree, model = _a.model, offset = _a.offset;
-    return typeof jest === 'undefined' ? (react_1.default.createElement(react_virtualized_auto_sizer_1.default, { disableWidth: true }, function (_a) {
-        var height = _a.height;
+const AutoSizedHierarchicalTree = ({ tree, model, offset, }) => {
+    return typeof jest === 'undefined' ? (react_1.default.createElement(react_virtualized_auto_sizer_1.default, { disableWidth: true }, ({ height }) => {
         return (react_1.default.createElement(HierarchicalTree, { height: height - offset, model: model, tree: tree }));
     })) : (react_1.default.createElement(HierarchicalTree, { height: 9000, model: model, tree: tree }));
 };
-var Wrapper = function (_a) {
-    var overrideDimensions = _a.overrideDimensions, children = _a.children;
-    return overrideDimensions ? (react_1.default.createElement("div", { style: __assign({}, overrideDimensions) }, children)) : (react_1.default.createElement(react_1.default.Fragment, null, children));
+const Wrapper = ({ overrideDimensions, children, }) => {
+    return overrideDimensions ? (react_1.default.createElement("div", { style: { ...overrideDimensions } }, children)) : (react_1.default.createElement(react_1.default.Fragment, null, children));
 };
-var HierarchicalTrackSelectorContainer = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model, toolbarHeight = _a.toolbarHeight, overrideDimensions = _a.overrideDimensions;
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var _b = __read((0, react_1.useState)(null), 2), anchorEl = _b[0], setAnchorEl = _b[1];
+const HierarchicalTrackSelectorContainer = (0, mobx_react_1.observer)(({ model, toolbarHeight, overrideDimensions, }) => {
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
     function handleFabClose() {
         setAnchorEl(null);
     }
-    var hasConnections = (0, util_1.isSessionModelWithConnections)(session);
-    var hasAddTrack = (0, util_1.isSessionWithAddTracks)(session);
+    const hasConnections = (0, util_1.isSessionModelWithConnections)(session);
+    const hasAddTrack = (0, util_1.isSessionWithAddTracks)(session);
     return (react_1.default.createElement(Wrapper, { overrideDimensions: overrideDimensions },
         react_1.default.createElement(HierarchicalTrackSelector, { model: model, toolbarHeight: toolbarHeight }),
         hasAddTrack || hasConnections ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Fab, { color: "secondary", className: classes.fab, onClick: function (event) { return setAnchorEl(event.currentTarget); } },
+            react_1.default.createElement(material_1.Fab, { color: "secondary", className: classes.fab, onClick: event => setAnchorEl(event.currentTarget) },
                 react_1.default.createElement(Add_1.default, null)),
-            react_1.default.createElement(material_1.Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onClose: function () { return setAnchorEl(null); } },
-                hasConnections ? (react_1.default.createElement(material_1.MenuItem, { onClick: function () {
+            react_1.default.createElement(material_1.Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onClose: () => setAnchorEl(null) },
+                hasConnections ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
                         handleFabClose();
                         if ((0, util_1.isSessionModelWithWidgets)(session)) {
                             session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
                         }
                     } }, "Add connection")) : null,
-                hasAddTrack ? (react_1.default.createElement(material_1.MenuItem, { onClick: function () {
+                hasAddTrack ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
                         handleFabClose();
                         if ((0, util_1.isSessionModelWithWidgets)(session)) {
                             session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
@@ -324,117 +142,13 @@ var HierarchicalTrackSelectorContainer = (0, mobx_react_1.observer)(function (_a
                         }
                     } }, "Add track")) : null))) : null));
 });
-var HierarchicalTrackSelectorHeader = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model, setHeaderHeight = _a.setHeaderHeight, setAssemblyIdx = _a.setAssemblyIdx, assemblyIdx = _a.assemblyIdx;
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var _b = __read((0, react_1.useState)(), 2), connectionAnchorEl = _b[0], setConnectionAnchorEl = _b[1];
-    var _c = __read((0, react_1.useState)(), 2), menuAnchorEl = _c[0], setMenuAnchorEl = _c[1];
-    var _d = __read((0, react_1.useState)(), 2), modalInfo = _d[0], setModalInfo = _d[1];
-    var _e = __read((0, react_1.useState)(), 2), deleteDialogDetails = _e[0], setDeleteDialogDetails = _e[1];
-    var _f = __read((0, react_1.useState)(false), 2), connectionManagerOpen = _f[0], setConnectionManagerOpen = _f[1];
-    var _g = __read((0, react_1.useState)(false), 2), connectionToggleOpen = _g[0], setConnectionToggleOpen = _g[1];
-    var assemblyNames = model.assemblyNames;
-    var assemblyName = assemblyNames[assemblyIdx];
-    function breakConnection(connectionConf, deletingConnection) {
-        var name = (0, configuration_1.readConfObject)(connectionConf, 'name');
-        // @ts-ignore
-        var result = session.prepareToBreakConnection(connectionConf);
-        if (result) {
-            var _a = __read(result, 2), safelyBreakConnection = _a[0], dereferenceTypeCount = _a[1];
-            if (Object.keys(dereferenceTypeCount).length > 0) {
-                setModalInfo({
-                    connectionConf: connectionConf,
-                    safelyBreakConnection: safelyBreakConnection,
-                    dereferenceTypeCount: dereferenceTypeCount,
-                    name: name,
-                });
-            }
-            else {
-                safelyBreakConnection();
-            }
-        }
-        if (deletingConnection) {
-            setDeleteDialogDetails({ name: name, connectionConf: connectionConf });
-        }
-    }
-    var connectionMenuItems = [
-        {
-            label: 'Turn on/off connections...',
-            onClick: function () { return setConnectionToggleOpen(true); },
-        },
-    ];
-    if ((0, util_1.isSessionModelWithConnections)(session)) {
-        connectionMenuItems.unshift({
-            label: 'Add connection',
-            onClick: function () {
-                if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                    var widget = session.addWidget('AddConnectionWidget', 'addConnectionWidget');
-                    session.showWidget(widget);
-                }
-            },
-        });
-        connectionMenuItems.push({
-            label: 'Delete connections...',
-            onClick: function () { return setConnectionManagerOpen(true); },
-        });
-    }
-    var assemblyMenuItems = assemblyNames.length > 1
-        ? [
-            {
-                label: 'Select assembly...',
-                subMenu: assemblyNames.map(function (name, idx) { return ({
-                    label: name,
-                    onClick: function () { return setAssemblyIdx(idx); },
-                }); }),
-            },
-        ]
-        : [];
-    var menuItems = __spreadArray([
-        {
-            label: 'Add track...',
-            onClick: function () {
-                if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                    var widget = session.addWidget('AddTrackWidget', 'addTrackWidget', {
-                        view: model.view.id,
-                    });
-                    session.showWidget(widget);
-                }
-            },
-        }
-    ], __read(assemblyMenuItems), false);
-    return (react_1.default.createElement("div", { ref: function (ref) { return setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0); }, "data-testid": "hierarchical_track_selector" },
-        react_1.default.createElement("div", { style: { display: 'flex' } },
-            (0, util_1.isSessionWithAddTracks)(session) && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: function (event) { return setMenuAnchorEl(event.currentTarget); } },
-                react_1.default.createElement(Menu_1.default, null))),
-            session.makeConnection && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: function (event) { return setConnectionAnchorEl(event.currentTarget); } },
-                react_1.default.createElement(Icons_1.Cable, null))),
-            react_1.default.createElement(material_1.TextField, { className: classes.searchBox, label: "Filter tracks", value: model.filterText, onChange: function (event) { return model.setFilterText(event.target.value); }, fullWidth: true, InputProps: {
-                    endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
-                        react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: model.clearFilterText },
-                            react_1.default.createElement(Clear_1.default, null)))),
-                } })),
-        react_1.default.createElement(Menu_2.default, { anchorEl: connectionAnchorEl, open: Boolean(connectionAnchorEl), onMenuItemClick: function (_, callback) {
-                callback();
-                setConnectionAnchorEl(undefined);
-            }, onClose: function () { return setConnectionAnchorEl(undefined); }, menuItems: connectionMenuItems }),
-        react_1.default.createElement(Menu_2.default, { anchorEl: menuAnchorEl, open: Boolean(menuAnchorEl), onMenuItemClick: function (_, callback) {
-                callback();
-                setMenuAnchorEl(undefined);
-            }, onClose: function () { return setMenuAnchorEl(undefined); }, menuItems: menuItems }),
-        react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
-            modalInfo ? (react_1.default.createElement(CloseConnectionDialog, { modalInfo: modalInfo, setModalInfo: setModalInfo })) : deleteDialogDetails ? (react_1.default.createElement(DeleteConnectionDialog, { handleClose: function () { return setDeleteDialogDetails(undefined); }, deleteDialogDetails: deleteDialogDetails, session: session })) : null,
-            connectionManagerOpen ? (react_1.default.createElement(ManageConnectionsDialog, { handleClose: function () { return setConnectionManagerOpen(false); }, breakConnection: breakConnection, session: session })) : null,
-            connectionToggleOpen ? (react_1.default.createElement(ToggleConnectionsDialog, { handleClose: function () { return setConnectionToggleOpen(false); }, session: session, breakConnection: breakConnection, assemblyName: assemblyName })) : null)));
-});
-var HierarchicalTrackSelector = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model, _b = _a.toolbarHeight, toolbarHeight = _b === void 0 ? 0 : _b;
-    var _c = __read((0, react_1.useState)(0), 2), assemblyIdx = _c[0], setAssemblyIdx = _c[1];
-    var _d = __read((0, react_1.useState)(0), 2), headerHeight = _d[0], setHeaderHeight = _d[1];
-    var assemblyNames = model.assemblyNames;
-    var assemblyName = assemblyNames[assemblyIdx];
+const HierarchicalTrackSelector = (0, mobx_react_1.observer)(({ model, toolbarHeight = 0, }) => {
+    const [assemblyIdx, setAssemblyIdx] = (0, react_1.useState)(0);
+    const [headerHeight, setHeaderHeight] = (0, react_1.useState)(0);
+    const { assemblyNames } = model;
+    const assemblyName = assemblyNames[assemblyIdx];
     return assemblyName ? (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(HierarchicalTrackSelectorHeader, { model: model, setHeaderHeight: setHeaderHeight, setAssemblyIdx: setAssemblyIdx, assemblyIdx: assemblyIdx }),
+        react_1.default.createElement(Header_1.default, { model: model, setHeaderHeight: setHeaderHeight, setAssemblyIdx: setAssemblyIdx, assemblyIdx: assemblyIdx }),
         react_1.default.createElement(AutoSizedHierarchicalTree, { tree: model.hierarchy(assemblyName), model: model, offset: toolbarHeight + headerHeight }))) : null;
 });
 exports.default = HierarchicalTrackSelectorContainer;

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map

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+{"version":3,"file":"HierarchicalTrackSelector.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAgF;AAChF,4CAAmD;AACnD,uCAA0C;AAC1C,QAAQ;AACR,kEAA6C;AAC7C,QAAQ;AACR,gGAAoD;AACpD,6CAK2B;AAC3B,2CAAqC;AACrC,6CAA8C;AAI9C,sDAA6B;AAC7B,kDAAyB;AAEzB,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,GAAG,EAAE;QACH,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,WAAW,CAClB,IAAc,EACd,YAAoB,EACpB,KAA8B,EAC9B,SAAkC;IAElC,MAAM,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAA;IAC1B,MAAM,QAAQ,GAAG,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;IACrC,OAAO;QACL,IAAI,EAAE;YACJ,aAAa,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE;YAC/B,MAAM;YACN,eAAe,EAAE,IAAI;YACrB,YAAY;YACZ,QAAQ;YACR,GAAG,IAAI;YACP,GAAG,KAAK;SACT;QACD,YAAY;QACZ,IAAI;KACL,CAAA;AACH,CAAC;AAID,+EAA+E;AAC/E,4EAA4E;AAC5E,uEAAuE;AACvE,MAAM,gBAAgB,GAAG,IAAA,qBAAQ,EAC/B,CAAC,EACC,MAAM,EACN,IAAI,EACJ,KAAK,GAKN,EAAE,EAAE;IACH,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC7C,MAAM,OAAO,GAAG,IAAA,cAAM,EAAW,IAAI,CAAC,CAAA;IACtC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,cAAc,EAAE,GAAG,OAAO,CAAA;IAClC,MAAM,GAAG,GAAG,IAAA,eAAO,EACjB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,EAC5D,CAAC,SAAS,CAAC,CACZ,CAAA;IAED,MAAM,KAAK,GAAG,IAAA,eAAO,EACnB,GAAG,EAAE,CAAC,CAAC;QACL,QAAQ,EAAE,CAAC,OAAe,EAAE,EAAE,CAAC,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC;QACxD,cAAc,EAAE,CAAC,QAAgB,EAAE,EAAE,CAAC,KAAK,CAAC,cAAc,CAAC,QAAQ,CAAC;QACpE,IAAI;QACJ,KAAK;QACL,cAAc;KACf,CAAC,EACF,CAAC,IAAI,EAAE,KAAK,EAAE,cAAc,EAAE,IAAI,CAAC,CACpC,CAAA;IACD,MAAM,UAAU,GAAG,IAAA,mBAAW,EAC5B,QAAQ,CAAC,CAAC,UAAU;QAClB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC7C,MAAM,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC1B,MAAM,WAAW,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;SACpC;QAED,OAAO,IAAI,EAAE;YACX,aAAa;YACb,MAAM,UAAU,GAAG,KAAK,CAAA;YAExB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACxD,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACxC,MAAM,WAAW,CAAC,IAAI,EAAE,UAAU,CAAC,YAAY,GAAG,CAAC,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;aACjE;SACF;IACH,CAAC,EACD,CAAC,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,CACnB,CAAA;IAED,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,aAAa;QACb,OAAO,CAAC,OAAO,CAAC,aAAa,CAAC;YAC5B,YAAY,EAAE,IAAI;YAClB,gBAAgB,EAAE,IAAI;SACvB,CAAC,CAAA;IACJ,CAAC,EAAE,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC,CAAA;IACtB,OAAO,CACL;QAEE,8BAAC,8BAAgB,IAAC,GAAG,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,IAEnE,cAAI,CACY,CAClB,CACJ,CAAA;AACH,CAAC,CACF,CAAA;AAED,6EAA6E;AAC7E,aAAa;AACb,MAAM,yBAAyB,GAAG,CAAC,EACjC,IAAI,EACJ,KAAK,EACL,MAAM,GAKP,EAAE,EAAE;IACH,OAAO,OAAO,IAAI,KAAK,WAAW,CAAC,CAAC,CAAC,CACnC,8BAAC,sCAAS,IAAC,YAAY,UACpB,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;QACd,OAAO,CACL,8BAAC,gBAAgB,IACf,MAAM,EAAE,MAAM,GAAG,MAAM,EACvB,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAA;IACH,CAAC,CACS,CACb,CAAC,CAAC,CAAC,CACF,8BAAC,gBAAgB,IAAC,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,GAAI,CAC7D,CAAA;AACH,CAAC,CAAA;AAED,MAAM,OAAO,GAAG,CAAC,EACf,kBAAkB,EAClB,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,kBAAkB,CAAC,CAAC,CAAC,CAC1B,uCAAK,KAAK,EAAE,EAAE,GAAG,kBAAkB,EAAE,IAAG,QAAQ,CAAO,CACxD,CAAC,CAAC,CAAC,CACF,8DAAG,QAAQ,CAAI,CAChB,CAAA;AACH,CAAC,CAAA;AACD,MAAM,kCAAkC,GAAG,IAAA,qBAAQ,EACjD,CAAC,EACC,KAAK,EACL,aAAa,EACb,kBAAkB,GAKnB,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAA2B,IAAI,CAAC,CAAA;IAExE,SAAS,cAAc;QACrB,WAAW,CAAC,IAAI,CAAC,CAAA;IACnB,CAAC;IACD,MAAM,cAAc,GAAG,IAAA,oCAA6B,EAAC,OAAO,CAAC,CAAA;IAC7D,MAAM,WAAW,GAAG,IAAA,6BAAsB,EAAC,OAAO,CAAC,CAAA;IACnD,OAAO,CACL,8BAAC,OAAO,IAAC,kBAAkB,EAAE,kBAAkB;QAC7C,8BAAC,yBAAyB,IACxB,KAAK,EAAE,KAAK,EACZ,aAAa,EAAE,aAAa,GAC5B;QACD,WAAW,IAAI,cAAc,CAAC,CAAC,CAAC,CAC/B;YACE,8BAAC,cAAG,IACF,KAAK,EAAC,WAAW,EACjB,SAAS,EAAE,OAAO,CAAC,GAAG,EACtB,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC;gBAElD,8BAAC,aAAO,OAAG,CACP;YACN,8BAAC,eAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,OAAO,CAAC,QAAQ,CAAC,EACvB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC;gBAE/B,cAAc,CAAC,CAAC,CAAC,CAChB,8BAAC,mBAAQ,IACP,OAAO,EAAE,GAAG,EAAE;wBACZ,cAAc,EAAE,CAAA;wBAChB,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;4BACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CACf,qBAAqB,EACrB,qBAAqB,CACtB,CACF,CAAA;yBACF;oBACH,CAAC,qBAGQ,CACZ,CAAC,CAAC,CAAC,IAAI;gBACP,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,mBAAQ,IACP,OAAO,EAAE,GAAG,EAAE;wBACZ,cAAc,EAAE,CAAA;wBAChB,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;4BACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;gCACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;6BACpB,CAAC,CACH,CAAA;yBACF;oBACH,CAAC,gBAGQ,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACN,CACJ,CAAC,CAAC,CAAC,IAAI,CACA,CACX,CAAA;AACH,CAAC,CACF,CAAA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package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js

@@ -3,13 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var Close_1 = __importDefault(require("@mui/icons-material/Close"));
-var mobx_react_1 = require("mobx-react");
-var configuration_1 = require("@jbrowse/core/configuration");
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const mobx_react_1 = require("mobx-react");
+const configuration_1 = require("@jbrowse/core/configuration");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     closeButton: {
         position: 'absolute',
         right: theme.spacing(1),
@@ -20,24 +20,23 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
         margin: theme.spacing(4),
         width: 500,
     },
-}); });
-function ManageConnectionsDlg(_a) {
-    var session = _a.session, handleClose = _a.handleClose, breakConnection = _a.breakConnection;
-    var classes = useStyles().classes;
-    var adminMode = session.adminMode, connections = session.connections, sessionConnections = session.sessionConnections;
+}));
+function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
+    const { classes } = useStyles();
+    const { adminMode, connections, sessionConnections } = session;
     return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
         react_1.default.createElement(material_1.DialogTitle, null,
             "Delete connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: function () { return handleClose(); } },
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
                 react_1.default.createElement(Close_1.default, null))),
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Click the X icon to delete the connection from your config completely"),
             react_1.default.createElement("div", { className: classes.connectionContainer },
-                connections.map(function (conf) {
-                    var name = (0, configuration_1.readConfObject)(conf, 'name');
-                    return (react_1.default.createElement("div", { key: "conn-".concat(name) },
+                connections.map(conf => {
+                    const name = (0, configuration_1.readConfObject)(conf, 'name');
+                    return (react_1.default.createElement("div", { key: `conn-${name}` },
                         react_1.default.createElement(material_1.Typography, null,
-                            adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (react_1.default.createElement(material_1.IconButton, { onClick: function () { return breakConnection(conf, true); } },
+                            adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (react_1.default.createElement(material_1.IconButton, { onClick: () => breakConnection(conf, true) },
                                 react_1.default.createElement(Close_1.default, { color: "error" }))) : (react_1.default.createElement(material_1.Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
                                 react_1.default.createElement(material_1.IconButton, null,
                                     react_1.default.createElement(Close_1.default, { color: "disabled" })))),
@@ -45,7 +44,7 @@ function ManageConnectionsDlg(_a) {
                 }),
                 !connections.length ? (react_1.default.createElement(material_1.Typography, null, "No connections found")) : null)),
         react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { onClick: function () { return handleClose(); }, variant: "contained", color: "primary" }, "Close"))));
+            react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
 }
 exports.default = (0, mobx_react_1.observer)(ManageConnectionsDlg);
 //# sourceMappingURL=ManageConnectionsDialog.js.map